pycom10g00170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0016400
Physical Location & Seq
Reverse (-)
259324 .. 260684
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGGGGCCCTTGAAATCAGAATCCGTCCGGATCCGGCCTGATGAACAACCGATGCGGCCTACCAAACAACCACGGCTTGCAGAGGCAGAAGAATCAAAACCGGCAGAGGCACAACAACAAAAGGTGGCTGAGGCACAGGGACGAAAGAAGTTTGCTTTTGATTATGCTAAACAAACCCCAAGGTTCAGGTACTGTTGCATTTGTATGAAGAATGATCACAGTGCACCACTTTGCCCGTACGGGAGATATTGCTCACCAGACGTAACTGTTGGCCCAGATGCTGCAATAGTCTGTACGTGTTGCCATGGTGATCCAAAAACAGCCCACCCTGATGTGGCTGATGTGGAAATGGTAACAAGAGCTGTACTCAAGAGTTCTCTGCCACCATCAAGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.71

Weight (kDa)

8.64

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016400)

Species Orthologous Gene IDs
malus_domestica MD10G1001800.v1.1
pyrus_communis pycom10g00170
rosa_laevigata RLG00000007703 RLG00000007704
rosa_multiflora Rmu_sc0001162.1_g000001
rosa_rugosa Rorug04G0169600 Rorug04G0175900
rosa_samantha Rh4AG230300 Rh4AG234900 Rh4BG233200 Rh4CG249800 Rh4DG229000 Rh4DG233800
rosa_wichuraiana Rw4G019940 Rw4G020350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 27
AciI CCGC 1 cut(s) 55
AclWI GGATC 3 cut(s) 25, 38, 305
AfaI GTAC 4 cut(s) 191, 239, 295, 366
AfiI CCNNNNNNNGG 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 296
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
Alw21I GWGCWC 1 cut(s) 226
Alw44I GTGCAC 1 cut(s) 222
AlwI GGATC 3 cut(s) 25, 38, 305
AlwNI CAGNNNCTG 2 cut(s) 192, 281
Aor13HI TCCGGA 1 cut(s) 27
AoxI GGCC 4 cut(s) 5, 35, 56, 271
ApaI GGGCCC 1 cut(s) 9
ApaLI GTGCAC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 281
AspS9I GGNCC 3 cut(s) 5, 6, 272
AsuHPI GGTGA 2 cut(s) 246, 320
BaeGI GKGCMC 2 cut(s) 9, 226
BamHI GGATCC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 226
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 394
BceAI ACGGC 1 cut(s) 89
BclI TGATCA 1 cut(s) 214
BisI GCNGC 2 cut(s) 56, 282
BlsI GCNGC 2 cut(s) 57, 283
BmgT120I GGNCC 3 cut(s) 5, 6, 272
BmiI GGNNCC 3 cut(s) 6, 7, 32
BmsI GCATC 2 cut(s) 42, 268
BplI GAGNNNNNCTC 2 cut(s) 351, 383
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 353
BsaAI YACGTR 1 cut(s) 297
BsaJI CCNNGG 3 cut(s) 71, 179, 304
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 100
BseAI TCCGGA 1 cut(s) 27
BseDI CCNNGG 3 cut(s) 71, 179, 304
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 120
BseSI GKGCMC 2 cut(s) 9, 226
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 4 cut(s) 7, 37, 58, 273
BsiHKAI GWGCWC 1 cut(s) 226
BsiSI CCGG 3 cut(s) 28, 34, 101
BsiWI CGTACG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 4 cut(s) 7, 37, 58, 273
Bsp120I GGGCCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 9, 226
Bsp13I TCCGGA 1 cut(s) 27
Bsp143I GATC 3 cut(s) 30, 214, 310
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 1 cut(s) 55
BspANI GGCC 4 cut(s) 7, 37, 58, 273
BspCNI CTCAG 1 cut(s) 121
BspEI TCCGGA 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 6, 7, 32
BspPI GGATC 3 cut(s) 25, 38, 305
BsrFI RCCGGY 1 cut(s) 100
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 3 cut(s) 71, 179, 304
BssMI GATC 3 cut(s) 30, 214, 310
BssT1I CCWWGG 2 cut(s) 179, 304
Bst4CI ACNGT 3 cut(s) 194, 221, 268
BstBAI YACGTR 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 129
BstDSI CCRYGG 2 cut(s) 71, 304
BstKTI GATC 3 cut(s) 33, 217, 313
BstMBI GATC 3 cut(s) 30, 214, 310
BstSLI GKGCMC 2 cut(s) 9, 226
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 393
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 4 cut(s) 7, 37, 58, 273
BtgI CCRYGG 2 cut(s) 71, 304
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 78
CaiI CAGNNNCTG 2 cut(s) 192, 281
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 3 cut(s) 5, 6, 272
Csp6I GTAC 4 cut(s) 190, 238, 294, 365
CviAII CATG 1 cut(s) 305
CviJI RGCY 9 cut(s) 7, 37, 58, 76, 128, 273, 323, 338, 362
CviKI_1 RGCY 9 cut(s) 7, 37, 58, 76, 128, 273, 323, 338, 362
CviQI GTAC 4 cut(s) 190, 238, 294, 365
DdeI CTNAG 1 cut(s) 129
DpnI GATC 3 cut(s) 32, 216, 312
DpnII GATC 3 cut(s) 30, 214, 310
Eco130I CCWWGG 2 cut(s) 179, 304
Eco24I GRGCYC 1 cut(s) 9
EcoO109I RGGNCCY 2 cut(s) 5, 6
EcoT14I CCWWGG 2 cut(s) 179, 304
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 179, 304
FaeI CATG 1 cut(s) 308
FaiI YATR 3 cut(s) 165, 206, 306
FaqI GGGAC 1 cut(s) 153
FatI CATG 1 cut(s) 304
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 56, 282
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 2 cut(s) 56, 282
GluI GCNGC 2 cut(s) 56, 282
HaeIII GGCC 4 cut(s) 7, 37, 58, 273
HapII CCGG 3 cut(s) 28, 34, 101
Hin1II CATG 1 cut(s) 308
HinfI GANTC 2 cut(s) 20, 92
HpaII CCGG 3 cut(s) 28, 34, 101
HphI GGTGA 2 cut(s) 246, 320
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 28, 370
Hpy8I GTNNAC 1 cut(s) 224
HpyCH4III ACNGT 3 cut(s) 194, 221, 268
HpyCH4IV ACGT 2 cut(s) 261, 296
HpyCH4V TGCA 4 cut(s) 80, 198, 224, 284
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 2 cut(s) 261, 296
Hsp92II CATG 1 cut(s) 308
Kpn2I TCCGGA 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 3 cut(s) 30, 214, 310
LpnPI CCDG 9 cut(s) 41, 47, 51, 114, 122, 172, 270, 288, 342
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 2 cut(s) 42, 268
MaeII ACGT 2 cut(s) 261, 296
MaeIII GTNAC 2 cut(s) 262, 352
MalI GATC 3 cut(s) 32, 216, 312
MboI GATC 3 cut(s) 30, 214, 310
MboII GAAGA 2 cut(s) 101, 220
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 2 cut(s) 9, 226
MnlI CCTC 3 cut(s) 76, 100, 124
MroI TCCGGA 1 cut(s) 27
MslI CAYNNNNRTG 3 cut(s) 203, 330, 391
MspI CCGG 3 cut(s) 28, 34, 101
NcoI CCATGG 1 cut(s) 304
NdeII GATC 3 cut(s) 30, 214, 310
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 3 cut(s) 6, 7, 32
PfeI GAWTC 2 cut(s) 20, 92
Pfl23II CGTACG 1 cut(s) 237
PkrI GCNGC 2 cut(s) 57, 283
Ppu21I YACGTR 1 cut(s) 297
PspLI CGTACG 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 6, 7, 32
PspOMI GGGCCC 1 cut(s) 5
PspPI GGNCC 3 cut(s) 5, 6, 272
PstNI CAGNNNCTG 2 cut(s) 192, 281
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 4 cut(s) 191, 239, 295, 366
RsaNI GTAC 4 cut(s) 190, 238, 294, 365
RseI CAYNNNNRTG 3 cut(s) 203, 330, 391
SatI GCNGC 2 cut(s) 56, 282
Sau3AI GATC 3 cut(s) 30, 214, 310
Sau96I GGNCC 3 cut(s) 5, 6, 272
SduI GDGCHC 2 cut(s) 9, 226
SetI ASST 7 cut(s) 126, 185, 191, 264, 299, 364, 395
SfaNI GCATC 2 cut(s) 42, 268
SmiMI CAYNNNNRTG 3 cut(s) 203, 330, 391
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SsiI CCGC 1 cut(s) 55
StyI CCWWGG 2 cut(s) 179, 304
TaaI ACNGT 3 cut(s) 194, 221, 268
TaiI ACGT 2 cut(s) 264, 299
TatI WGTACW 1 cut(s) 364
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 2 cut(s) 20, 92
TscAI CASTG 1 cut(s) 226
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 57, 221
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 1 cut(s) 226
VneI GTGCAC 1 cut(s) 222
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.