Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003815

Physical Location & Seq

Genomic Coordinates Reverse (-)

354739 .. 356421

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCTTGAGGATTTGATTTCTGTTGAAAGCAATTCGTTTGTTTCTGAGGGAGCAACAGTTGACCAGAAACCTGTACCCTCCCACCCAGACTCCCTTGAGGTTGATGAATTTTATCATGATATTGTTAAAGAATCGGAACCCCAATATGCAGCTGGAGGGTCTAATGTGAATAATGATATGATGAATAGTGAAGTGCTTGATCCTGTCAAAGAAGTTCGTCATCAACAAGTTAATAGGATGCCTGGGGACACTGTTCTTAAAATTTTAATGCAGAAAGTTCGTTCATTAGATTTCAGTTTATCAGTTCTAGAGCGATACCTGGAGGAATCTACTTCAAAATATGGCAGTATTTTCGGAGAATTTGACAAAAATTTGGGAGAGAAAGATACAGATTTACAGAAGATCAGAGAAGACATAAGGAATCTCGTTCAAAGCCAGGAAGACATTGCTAACGATGTTCACAATCTCAGATCTTGGCAGTCCTTAGTTACCATGCAATTGAATAATCTAGTCAGGGACAATGCTCTCCTGAGATCTGAGGTTGAAAGGGTGAGGGAGAAGCAGATATCTGTAGATAATAAGGGTGTCTTAATATTTCTTATATGCATAATATTTTCATTGTTAGCTCTTGTGAGGCTTTTCACAGAAATGGCGGTTAGTGTTTATATGGCATTGAGTGTTGATAGAACAACAGAAAAGCCGAGGAAATTTTGTTCGATGAGTTCTTCCTGGCTTTTTTTACTTGTGAGCTGTATCCTTGTCCTGTTTATATTATCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

261

Amino Acids

29.64

Weight (kDa)

4.86

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22882 AT1G71360 AT1G71360
fragaria_vesca	FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480
malus_domestica	MD05G1001800.v1.1 MD10G1003000.v1.1
prunus_persica	Prupe.8G004700_v2.0.a1 Prupe.8G004700_v2.0.a1 Prupe.8G004700_v2.0.a1 Prupe.8G004700_v2.0.a1
pyrus_communis	pycom05g00200 pycom10g00240
rosa_chinensis	RchiOBHm_Chr6g0250471
rosa_laevigata	RLG00000015538
rosa_multiflora	Rmu_sc0001209.1_g000035
rosa_roxburghii	Rroxscaffold_7G00217210
rosa_rugosa	Rorug05G0497300 Rorug05G0497400 Rorug05G0497400 Rorug05G0497400
rosa_samantha	Rh6AG006100 Rh6BG004600 Rh6CG004300 Rh6DG004200
rosa_wichuraiana	Rw0G015440 Rw6G000660 Rw6G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	781
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	5 cut(s)	107, 261, 359, 370, 707
AfaI	GTAC	1 cut(s)	75
AgsI	TTSAA	5 cut(s)	26, 336, 431, 502, 545
AjnI	CCWGG	4 cut(s)	241, 318, 435, 728
AloI	GAACNNNNNNTCC	2 cut(s)	697, 729
AluBI	AGCT	3 cut(s)	152, 626, 750
AluI	AGCT	3 cut(s)	152, 626, 750
AlwI	GGATC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	5 cut(s)	107, 261, 359, 370, 707
AsuHPI	GGTGA	1 cut(s)	562
BbsI	GAAGAC	2 cut(s)	417, 447
BbvI	GCAGC	1 cut(s)	161
BcgI	CGANNNNNNTGC	4 cut(s)	260, 294, 334, 368
BciT130I	CCWGG	4 cut(s)	243, 320, 437, 730
BciVI	GTATCC	1 cut(s)	764
BfaI	CTAG	2 cut(s)	308, 509
BfmI	CTRYAG	1 cut(s)	570
BfuI	GTATCC	1 cut(s)	764
BglII	AGATCT	2 cut(s)	470, 533
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	4 cut(s)	243, 320, 437, 730
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	4 cut(s)	243, 320, 437, 730
BmsI	GCATC	1 cut(s)	228
BpiI	GAAGAC	2 cut(s)	417, 447
BpmI	CTGGAG	2 cut(s)	174, 341
BpuEI	CTTGAG	2 cut(s)	26, 116
BsaJI	CCNNGG	2 cut(s)	242, 701
BsaXI	ACNNNNNCTCC	4 cut(s)	42, 72, 74, 104
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	4 cut(s)	243, 320, 437, 730
BseDI	CCNNGG	2 cut(s)	242, 701
BseGI	GGATG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	4 cut(s)	36, 481, 521, 528
BseXI	GCAGC	1 cut(s)	161
BslFI	GGGAC	2 cut(s)	260, 530
BsmFI	GGGAC	2 cut(s)	260, 530
Bsp143I	GATC	4 cut(s)	199, 402, 470, 533
BspACI	CCGC	1 cut(s)	653
BspCNI	CTCAG	4 cut(s)	37, 480, 522, 529
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	242, 701
BssMI	GATC	4 cut(s)	199, 402, 470, 533
Bst2UI	CCWGG	4 cut(s)	243, 320, 437, 730
Bst4CI	ACNGT	2 cut(s)	58, 253
BstDEI	CTNAG	5 cut(s)	45, 467, 484, 530, 537
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	4 cut(s)	202, 405, 473, 536
BstMBI	GATC	4 cut(s)	199, 402, 470, 533
BstNI	CCWGG	4 cut(s)	243, 320, 437, 730
BstSCI	CCNGG	4 cut(s)	241, 318, 435, 728
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	1 cut(s)	161
BstV2I	GAAGAC	2 cut(s)	417, 447
BstX2I	RGATCY	2 cut(s)	470, 533
BstYI	RGATCY	2 cut(s)	470, 533
BsuI	GTATCC	1 cut(s)	764
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	249
CciI	TCATGA	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	116, 493
CviJI	RGCY	7 cut(s)	152, 435, 626, 637, 700, 733, 750
CviKI_1	RGCY	7 cut(s)	152, 435, 626, 637, 700, 733, 750
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	5 cut(s)	45, 467, 484, 530, 537
DpnI	GATC	4 cut(s)	201, 404, 472, 535
DpnII	GATC	4 cut(s)	199, 402, 470, 533
Eco32I	GATATC	1 cut(s)	567
EcoRII	CCWGG	4 cut(s)	241, 318, 435, 728
EcoRV	GATATC	1 cut(s)	567
EcoT22I	ATGCAT	1 cut(s)	608
FaeI	CATG	2 cut(s)	119, 496
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FaqI	GGGAC	2 cut(s)	260, 530
FatI	CATG	2 cut(s)	115, 492
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	2 cut(s)	308, 509
GluI	GCNGC	1 cut(s)	150
GsuI	CTGGAG	2 cut(s)	174, 341
Hin1II	CATG	2 cut(s)	119, 496
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	4 cut(s)	89, 131, 326, 421
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	2 cut(s)	61, 460
Hpy188I	TCNGA	6 cut(s)	46, 136, 356, 407, 470, 538
Hpy188III	TCNNGA	3 cut(s)	116, 308, 529
Hpy8I	GTNNAC	2 cut(s)	61, 460
HpyCH4III	ACNGT	2 cut(s)	58, 253
HpyCH4V	TGCA	4 cut(s)	149, 271, 496, 606
HpyF3I	CTNAG	5 cut(s)	45, 467, 484, 530, 537
Hsp92II	CATG	2 cut(s)	119, 496
Kzo9I	GATC	4 cut(s)	199, 402, 470, 533
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	2 cut(s)	308, 509
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	4 cut(s)	201, 404, 472, 535
MboI	GATC	4 cut(s)	199, 402, 470, 533
MboII	GAAGA	4 cut(s)	412, 422, 452, 717
MfeI	CAATTG	1 cut(s)	497
MflI	RGATCY	2 cut(s)	470, 533
MluCI	AATT	7 cut(s)	31, 107, 261, 359, 370, 497, 707
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	9 cut(s)	40, 88, 91, 149, 316, 532, 546, 627, 696
Mph1103I	ATGCAT	1 cut(s)	608
MseI	TTAA	5 cut(s)	126, 231, 258, 266, 590
MslI	CAYNNNNRTG	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	152
MspR9I	CCNGG	4 cut(s)	243, 320, 437, 730
MunI	CAATTG	1 cut(s)	497
MvaI	CCWGG	4 cut(s)	243, 320, 437, 730
NdeII	GATC	4 cut(s)	199, 402, 470, 533
NlaIII	CATG	2 cut(s)	119, 496
NlaIV	GGNNCC	1 cut(s)	138
NmeAIII	GCCGAG	1 cut(s)	726
NsiI	ATGCAT	1 cut(s)	608
PagI	TCATGA	1 cut(s)	115
PfeI	GAWTC	3 cut(s)	131, 326, 421
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PsiI	TTATAA	1 cut(s)	781
Psp6I	CCWGG	4 cut(s)	241, 318, 435, 728
PspGI	CCWGG	4 cut(s)	241, 318, 435, 728
PspN4I	GGNNCC	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	470, 533
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	647
SaqAI	TTAA	5 cut(s)	126, 231, 258, 266, 590
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	4 cut(s)	199, 402, 470, 533
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	4 cut(s)	243, 320, 437, 730
SetI	ASST	7 cut(s)	73, 102, 154, 321, 543, 628, 752
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	570
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	5, 95
SmoI	CTYRAG	2 cut(s)	5, 95
Sse9I	AATT	7 cut(s)	31, 107, 261, 359, 370, 497, 707
SsiI	CCGC	1 cut(s)	653
SspI	AATATT	2 cut(s)	594, 612
SspMI	CTAG	2 cut(s)	308, 509
StyD4I	CCNGG	4 cut(s)	241, 318, 435, 728
TaaI	ACNGT	2 cut(s)	58, 253
TaqI	TCGA	1 cut(s)	716
TasI	AATT	7 cut(s)	31, 107, 261, 359, 370, 497, 707
TfiI	GAWTC	3 cut(s)	131, 326, 421
Tru1I	TTAA	5 cut(s)	126, 231, 258, 266, 590
Tru9I	TTAA	5 cut(s)	126, 231, 258, 266, 590
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	4 cut(s)	120, 197, 273, 606
TspRI	CASTG	1 cut(s)	256
XapI	RAATTY	5 cut(s)	107, 261, 359, 370, 707
XbaI	TCTAGA	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XspI	CTAG	2 cut(s)	308, 509
Zsp2I	ATGCAT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.