Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012386

Physical Location & Seq

Genomic Coordinates Reverse (-)

4079909 .. 4081991

Gene Structure 2083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAAAAGCCCTAGACCGACATGCTTAAACCCTAAAGGCATTTCACTCATTCATTGTATTGGAGGCCGAAACCAACACTCTCAGAGCTCCTCTTCCTCGTTCCTTAAGCACCCAAACATCATGCGACCTCCCAGAGGCGGCGGAAGTTTCAGAGGCTCCCGCGGTCGCAGTGGTGGTGGTGGTGGCCGCGGCTTTAATAGGGGTGGTGGTCGCGGCTTTAATAGTGGTGGTCGCGGTTTCTTTCGCGATGAGGGCCCTCCTTCCGAAGTCGTAGAGGTTTCGACATTTGTTCATGCATGTGAGGGTGAGGCAGTGACAAAGCTCACAAATCCGAAGATACCCCATTTTAATGCCGCAATCTATCTGCAGAACAAGACTCAGATTGGGAAAGTTGATGAAATATTTGGTCCAATCAACGAATCCTACTTTTCGGTCAAAGTTATGGAAGGAATTGTGGCTACTTCGTATTCACAGGGTGATAAGTTCTATATTGACCCAATGAAGCTTCTTCCTCTTGAAAGATTTCTTCCGCAGCCAAAGGGACAGAAGCCAGCGTTTTCTCGAGGTGGAGGCCGTGGAAGGGGTGCTCCGAGGGGAAGGGGTTTTCCAAGGGGAGGGGGTTTTACGAGGGGAAGGGGTCCTCCGAGGGGTGGTAACCGTGGTGGCTTCAGGGGCAGAGGGAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0016074 GO:0022613 GO:0030515 GO:0031118 GO:0031429 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034513 GO:0034641 GO:0034660 GO:0042254 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Gar1

Protein Analysis

230

Amino Acids

24.53

Weight (kDa)

11.44

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gar1	PF04410	90 - 176	2e-26	Gar1/Naf1 RNA binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03920 AT5G18180
fragaria_vesca	FvH4_1g30320
malus_domestica	MD00G1189600.v1.1 MD05G1045500.v1.1
prunus_persica	Prupe.8G064800_v2.0.a1
pyrus_communis	pycom05g03790 pycom10g03750
rosa_chinensis	RchiOBHm_Chr3g0490211
rosa_laevigata	RLG00000022895
rosa_multiflora	Rmu_sc0018339.1_g000001 Rmu_sc0019534.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393700
rosa_rugosa	Rorug03G0243000
rosa_samantha	Rh3AG291400 Rh3BG328400 Rh3CG325400 Rh3DG324700
rosa_wichuraiana	Rw3G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	162, 189, 213, 234, 246
AcoI	YGGCCR	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	652
AdeI	CACNNNGTG	1 cut(s)	476
AfiI	CCNNNNNNNGG	6 cut(s)	134, 137, 580, 614, 647, 650
AflII	CTTAAG	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	518
AluBI	AGCT	3 cut(s)	87, 322, 505
AluI	AGCT	3 cut(s)	87, 322, 505
Alw21I	GWGCWC	2 cut(s)	89, 589
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	4 cut(s)	64, 184, 253, 571
ApaI	GGGCCC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	532
Asp700I	GAANNNNTTC	1 cut(s)	522
AspS9I	GGNCC	4 cut(s)	253, 254, 407, 638
AsuHPI	GGTGA	2 cut(s)	317, 488
AvaI	CYCGRG	1 cut(s)	561
AvaII	GGWCC	2 cut(s)	407, 638
BaeGI	GKGCMC	1 cut(s)	257
BanII	GRGCYC	2 cut(s)	89, 257
Bbv12I	GWGCWC	2 cut(s)	89, 589
BbvI	GCAGC	1 cut(s)	544
BceAI	ACGGC	1 cut(s)	558
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	365
BfrI	CTTAAG	1 cut(s)	104
BisI	GCNGC	6 cut(s)	139, 187, 190, 214, 354, 533
BlsI	GCNGC	6 cut(s)	140, 188, 191, 215, 355, 534
Bme18I	GGWCC	2 cut(s)	407, 638
BmeT110I	CYCGRG	1 cut(s)	561
BmgT120I	GGNCC	4 cut(s)	253, 254, 407, 638
BmiI	GGNNCC	3 cut(s)	157, 255, 639
BsaJI	CCNNGG	7 cut(s)	160, 187, 574, 590, 608, 644, 658
Bsc4I	CCNNNNNNNGG	6 cut(s)	134, 137, 580, 614, 647, 650
BseDI	CCNNGG	7 cut(s)	160, 187, 574, 590, 608, 644, 658
BseLI	CCNNNNNNNGG	6 cut(s)	134, 137, 580, 614, 647, 650
BseMII	CTCAG	2 cut(s)	95, 392
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	544
Bsh1236I	CGCG	5 cut(s)	162, 189, 213, 234, 246
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	4 cut(s)	66, 186, 255, 573
BsiEI	CGRYCG	1 cut(s)	166
BsiHKAI	GWGCWC	2 cut(s)	89, 589
BsiHKCI	CYCGRG	1 cut(s)	561
BslFI	GGGAC	1 cut(s)	555
BslI	CCNNNNNNNGG	6 cut(s)	134, 137, 580, 614, 647, 650
BsmFI	GGGAC	1 cut(s)	555
BsnI	GGCC	4 cut(s)	66, 186, 255, 573
BsoBI	CYCGRG	1 cut(s)	561
Bsp120I	GGGCCC	1 cut(s)	253
Bsp1286I	GDGCHC	3 cut(s)	89, 257, 589
Bsp68I	TCGCGA	1 cut(s)	246
BspANI	GGCC	4 cut(s)	66, 186, 255, 573
BspCNI	CTCAG	2 cut(s)	94, 391
BspFNI	CGCG	5 cut(s)	162, 189, 213, 234, 246
BspLI	GGNNCC	3 cut(s)	157, 255, 639
BspMAI	CTGCAG	1 cut(s)	369
BspTI	CTTAAG	1 cut(s)	104
BssECI	CCNNGG	7 cut(s)	160, 187, 574, 590, 608, 644, 658
BssT1I	CCWWGG	1 cut(s)	608
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	1 cut(s)	97
BstAFI	CTTAAG	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	2 cut(s)	81, 378
BstDSI	CCRYGG	4 cut(s)	160, 187, 574, 658
BstEII	GGTNACC	1 cut(s)	653
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstFNI	CGCG	5 cut(s)	162, 189, 213, 234, 246
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 672
BstNSI	RCATGY	2 cut(s)	24, 300
BstPI	GGTNACC	1 cut(s)	653
BstSFI	CTRYAG	1 cut(s)	365
BstSLI	GKGCMC	1 cut(s)	257
BstUI	CGCG	5 cut(s)	162, 189, 213, 234, 246
BstV1I	GCAGC	1 cut(s)	544
BsuRI	GGCC	4 cut(s)	66, 186, 255, 573
BtgI	CCRYGG	4 cut(s)	160, 187, 574, 658
BtgZI	GCGATG	1 cut(s)	261
BtsI	GCAGTG	2 cut(s)	175, 318
BtsIMutI	CAGTG	2 cut(s)	175, 318
BtuMI	TCGCGA	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	552
Cfr13I	GGNCC	4 cut(s)	253, 254, 407, 638
Cfr42I	CCGCGG	2 cut(s)	163, 190
CviAII	CATG	4 cut(s)	21, 121, 293, 297
DdeI	CTNAG	2 cut(s)	81, 378
DraIII	CACNNNGTG	1 cut(s)	476
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	156
Ecl136II	GAGCTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	608
Eco24I	GRGCYC	2 cut(s)	89, 257
Eco47I	GGWCC	2 cut(s)	407, 638
Eco53kI	GAGCTC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	652
Eco88I	CYCGRG	1 cut(s)	561
Eco91I	GGTNACC	1 cut(s)	653
EcoICRI	GAGCTC	1 cut(s)	87
EcoNI	CCTNNNNNAGG	1 cut(s)	132
EcoO109I	RGGNCCY	3 cut(s)	253, 254, 638
EcoO65I	GGTNACC	1 cut(s)	653
EcoT14I	CCWWGG	1 cut(s)	608
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	2 cut(s)	89, 257
ErhI	CCWWGG	1 cut(s)	608
FaeI	CATG	4 cut(s)	24, 124, 296, 300
FaiI	YATR	6 cut(s)	22, 122, 294, 298, 443, 489
FaqI	GGGAC	1 cut(s)	555
FatI	CATG	4 cut(s)	20, 120, 292, 296
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	6 cut(s)	139, 187, 190, 214, 354, 533
FriOI	GRGCYC	2 cut(s)	89, 257
Fsp4HI	GCNGC	6 cut(s)	139, 187, 190, 214, 354, 533
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	6 cut(s)	139, 187, 190, 214, 354, 533
HaeIII	GGCC	4 cut(s)	66, 186, 255, 573
Hin1II	CATG	4 cut(s)	24, 124, 296, 300
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	2 cut(s)	376, 419
HphI	GGTGA	2 cut(s)	317, 488
Hpy188I	TCNGA	7 cut(s)	84, 152, 265, 333, 381, 591, 645
Hpy188III	TCNNGA	3 cut(s)	245, 515, 561
HpyAV	CCTTC	5 cut(s)	270, 440, 573, 591, 627
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4V	TGCA	2 cut(s)	296, 367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 672
HpyF3I	CTNAG	2 cut(s)	81, 378
Hsp92II	CATG	4 cut(s)	24, 124, 296, 300
KspI	CCGCGG	2 cut(s)	163, 190
LmnI	GCTCC	3 cut(s)	92, 161, 592
LpnPI	CCDG	4 cut(s)	145, 458, 564, 655
Lsp1109I	GCAGC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	313, 653
MboII	GAAGA	4 cut(s)	84, 346, 500, 518
MhlI	GDGCHC	3 cut(s)	89, 257, 589
MluCI	AATT	1 cut(s)	450
MlyI	GAGTC	1 cut(s)	370
Mph1103I	ATGCAT	1 cut(s)	298
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	5 cut(s)	26, 105, 195, 219, 348
MslI	CAYNNNNRTG	2 cut(s)	297, 348
MspA1I	CMGCKG	2 cut(s)	162, 189
MspCI	CTTAAG	1 cut(s)	104
MvnI	CGCG	5 cut(s)	162, 189, 213, 234, 246
MwoI	GCNNNNNNNGC	2 cut(s)	252, 672
NlaIII	CATG	4 cut(s)	24, 124, 296, 300
NlaIV	GGNNCC	3 cut(s)	157, 255, 639
NmuCI	GTSAC	1 cut(s)	313
NruI	TCGCGA	1 cut(s)	246
NsiI	ATGCAT	1 cut(s)	298
NspI	RCATGY	2 cut(s)	24, 300
PaeR7I	CTCGAG	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	6 cut(s)	140, 188, 191, 215, 355, 534
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	638
Psp124BI	GAGCTC	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	638
PspEI	GGTNACC	1 cut(s)	653
PspN4I	GGNNCC	3 cut(s)	157, 255, 639
PspOMI	GGGCCC	1 cut(s)	253
PspPI	GGNCC	4 cut(s)	253, 254, 407, 638
PspPPI	RGGWCCY	1 cut(s)	638
PstI	CTGCAG	1 cut(s)	369
RruI	TCGCGA	1 cut(s)	246
RseI	CAYNNNNRTG	2 cut(s)	297, 348
SacI	GAGCTC	1 cut(s)	89
SacII	CCGCGG	2 cut(s)	163, 190
SaqAI	TTAA	5 cut(s)	26, 105, 195, 219, 348
SatI	GCNGC	6 cut(s)	139, 187, 190, 214, 354, 533
Sau96I	GGNCC	4 cut(s)	253, 254, 407, 638
SchI	GAGTC	1 cut(s)	370
SduI	GDGCHC	3 cut(s)	89, 257, 589
SetI	ASST	6 cut(s)	89, 130, 279, 324, 507, 568
SfcI	CTRYAG	1 cut(s)	365
Sfr274I	CTCGAG	1 cut(s)	561
Sfr303I	CCGCGG	2 cut(s)	163, 190
SgrBI	CCGCGG	2 cut(s)	163, 190
SinI	GGWCC	2 cut(s)	407, 638
SlaI	CTCGAG	1 cut(s)	561
SmiMI	CAYNNNNRTG	2 cut(s)	297, 348
SmlI	CTYRAG	2 cut(s)	104, 561
SmoI	CTYRAG	2 cut(s)	104, 561
Sse9I	AATT	1 cut(s)	450
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	608
TaaI	ACNGT	1 cut(s)	659
TaqI	TCGA	2 cut(s)	281, 562
TaqII	GACCGA	2 cut(s)	31, 421
TasI	AATT	1 cut(s)	450
TauI	GCSGC	5 cut(s)	141, 189, 192, 216, 356
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	5 cut(s)	26, 105, 195, 219, 348
Tru9I	TTAA	5 cut(s)	26, 105, 195, 219, 348
TscAI	CASTG	2 cut(s)	175, 318
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	1 cut(s)	532
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	5 cut(s)	17, 41, 281, 411, 515
TspRI	CASTG	2 cut(s)	175, 318
Vha464I	CTTAAG	1 cut(s)	104
VpaK11BI	GGWCC	2 cut(s)	407, 638
XagI	CCTNNNNNAGG	1 cut(s)	132
XceI	RCATGY	2 cut(s)	24, 300
XhoI	CTCGAG	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.