Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0017760

Physical Location & Seq

Genomic Coordinates Forward (+)

4183384 .. 4183587

Gene Structure 204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGTGATTAGAGACTCTAATGGTATATTTATTGTTGCTAGGAAGCAAAGTATTTCGGCAGCTGGAGTGCAAGAAGCTGAGGCAAAGGCTATCTTCGAGGGGTGCGAGCTTGCTAATCATTTGGAGTTAGGGAAGGTTATAATTGAATCAGATTCAAAGGAAGCTGTCTCCAGCTTATGCAATTCCATTTATCAGGGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 HSA Helicase_C SNF2_N zf-CCHC_4

Protein Analysis

68

Amino Acids

7.2

Weight (kDa)

5.22

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	1 - 61	1.8e-10	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017760)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g03880
rosa_multiflora	Rmu_co8299293.1_g000001 Rmu_ssc0000295.1_g000014
rosa_rugosa	Rorug01G0170600 Rorug01G0257200 Rorug02G0153900 Rorug02G0322400 Rorug02G0326900 Rorug03G0178500 Rorug04G0313500 Rorug05G0240800 Rorug06G0055500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	146, 156
AluBI	AGCT	5 cut(s)	62, 77, 109, 164, 174
AluI	AGCT	5 cut(s)	62, 77, 109, 164, 174
Alw26I	GTCTC	2 cut(s)	6, 172
ApeKI	GCWGC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	16
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	6, 172
BfaI	CTAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BpmI	CTGGAG	2 cut(s)	84, 154
Bpu10I	CCTNAGC	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	71
BsmAI	GTCTC	2 cut(s)	6, 172
BspCNI	CTCAG	1 cut(s)	70
BstC8I	GCNNGC	2 cut(s)	107, 111
BstDEI	CTNAG	1 cut(s)	78
BstMAI	GTCTC	2 cut(s)	6, 172
BstV1I	GCAGC	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	107, 111
CviJI	RGCY	6 cut(s)	62, 77, 89, 109, 164, 174
CviKI_1	RGCY	6 cut(s)	62, 77, 89, 109, 164, 174
DdeI	CTNAG	1 cut(s)	78
FaiI	YATR	3 cut(s)	26, 140, 178
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	1 cut(s)	60
GsuI	CTGGAG	2 cut(s)	84, 154
HinfI	GANTC	3 cut(s)	14, 146, 152
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	70, 180
HpyF3I	CTNAG	1 cut(s)	78
LpnPI	CCDG	3 cut(s)	48, 179, 184
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	39
MboII	GAAGA	1 cut(s)	85
MluCI	AATT	2 cut(s)	141, 181
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	2 cut(s)	73, 91
MspA1I	CMGCKG	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	146, 152
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	62
SatI	GCNGC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	8
SetI	ASST	7 cut(s)	64, 79, 111, 138, 166, 176, 203
SgeI	CNNG	7 cut(s)	51, 75, 83, 109, 118, 122, 183
Sse9I	AATT	2 cut(s)	141, 181
SspMI	CTAG	1 cut(s)	39
TaqI	TCGA	1 cut(s)	96
TasI	AATT	2 cut(s)	141, 181
TfiI	GAWTC	2 cut(s)	146, 152
TseI	GCWGC	1 cut(s)	59
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.