Rorug02G0153900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017760
Physical Location & Seq
Forward (+)
13622237 .. 13624484
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0153900.1

Sequence Viewer

Length: 1032 bp
ATGGAGTTTCCAGCTGCAGATGCTGATGACAATCCTCAAGACAACGGGTATCAGATGATGGGTCAGATTAGGTGTCCGATAACAGGAATTGTTATCAACACATACTTGGCACCACCTGGTGATAACCAGCAGCTGCCCTCGTTTTTCTTGTCGCATTTTACGGAGCACAGAGTACTTGGTTCGGGAGGATATGCAACCGTAGTAAAATGCACAAACAAGTTTGATGAGCAGGAATATGCCATCAAGAAAATTCCCATTGGAGAAGTGATTGAAGATAATCCCGAGTCACAAGCTTTCAGCTATGCATCTCTTGTAAGGGAGGCGAGAGTATGGTCCCGGCTTAATCACCAGAATATCGTCCGATACTATGAGTCTTGGACTGAAAACAAGTACTGCGGTTTGCTTGATGAAGATTGGGATGGGGACCCAATAGAACCAGAAAATCCATGCTTGTACATTCAATTGGAACTATGTGCCAGTTCCTTGGAACTCAAGCTGCAGCCAAATGAACAATGCATGAACAATTGGACCACCAGAGAAGAGTGTGCAAAGATTTTTGAAGAACTTGTGAAAGGTCTGAACCACATTCATGGCAAAGGGATAATGCACGGAGATATCACCAAGGCGAACATTCTCTTCTGCAATGGTGAAGCCAAAATCTCTGATTTTGGACTAGCCCGAACAACTGGGGCAAAGAATGATGAGGTTTACATGAAGGCGTTCCGACCTTATAGAGCACCTGAGAGGAAGACTGCTGATGCAGATGTCAAGGCTGATATATACAGCTTGGGAATCCTTTTATTCGAGATGCTACAGCCCTTCACAACAGATAGCGCCAGAGGTGTTGTTCTTACTGCCTTGAGGGATATGAAAATCTTTCCGAAAGGCTGGACTGATAACCCAGTAAGGACATGGGTGCTGAGAATGATAAATAATGCCCCATCACAAAGACCCTCAGCATCAGATCTTCTGCTCCACTGCGAAAGGATTAAGACCGATATTCGAAGGTCTGAGGCAATGCCCAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

343

Amino Acids

38.95

Weight (kDa)

5.18

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 53 - 326 3.4e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 56 - 323 2.4e-21 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 109
AciI CCGC 1 cut(s) 396
AcsI RAATTY 1 cut(s) 249
AdeI CACNNNGTG 1 cut(s) 119
AfaI GTAC 3 cut(s) 174, 392, 455
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 3 cut(s) 272, 461, 560
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 6 cut(s) 14, 133, 293, 300, 496, 786
AluI AGCT 6 cut(s) 14, 133, 293, 300, 496, 786
Alw21I GWGCWC 2 cut(s) 168, 739
AlwNI CAGNNNCTG 2 cut(s) 23, 133
Ama87I CYCGRG 1 cut(s) 281
ApeKI GCWGC 5 cut(s) 14, 130, 133, 496, 499
ApoI RAATTY 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 719
AspLEI GCGC 1 cut(s) 836
AspS9I GGNCC 3 cut(s) 333, 424, 528
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 4 cut(s) 131, 338, 610, 659
AsuII TTCGAA 1 cut(s) 1003
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 3 cut(s) 333, 424, 528
BanI GGYRCC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 755
Bbv12I GWGCWC 2 cut(s) 168, 739
BbvCI CCTCAGC 1 cut(s) 955
BbvI GCAGC 4 cut(s) 120, 142, 483, 511
BccI CCATC 4 cut(s) 52, 248, 413, 949
BciT130I CCWGG 1 cut(s) 117
BcnI CCSGG 1 cut(s) 337
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 3 cut(s) 15, 497, 812
BfoI RGCGCY 1 cut(s) 837
BglII AGATCT 1 cut(s) 964
BisI GCNGC 5 cut(s) 15, 131, 134, 497, 500
BlsI GCNGC 5 cut(s) 16, 132, 135, 498, 501
BmcAI AGTACT 2 cut(s) 174, 392
Bme1390I CCNGG 2 cut(s) 117, 337
Bme18I GGWCC 3 cut(s) 333, 424, 528
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 3 cut(s) 333, 424, 528
BmiI GGNNCC 4 cut(s) 111, 335, 425, 426
BmrFI CCNGG 2 cut(s) 117, 337
BmrI ACTGGG 3 cut(s) 696, 896, 1017
BmsI GCATC 5 cut(s) 10, 314, 748, 798, 968
BmuI ACTGGG 3 cut(s) 696, 896, 1017
BpiI GAAGAC 1 cut(s) 755
Bpu10I CCTNAGC 1 cut(s) 955
Bpu14I TTCGAA 1 cut(s) 1003
BpuEI CTTGAG 3 cut(s) 21, 476, 880
BpuMI CCSGG 1 cut(s) 337
BsaBI GATNNNNATC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 483, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 4 cut(s) 477, 691, 902, 1023
Bse3DI GCAATG 2 cut(s) 649, 1023
Bse8I GATNNNNATC 1 cut(s) 30
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 483, 621
BseGI GGATG 1 cut(s) 424
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 2 cut(s) 649, 1023
BseMII CTCAG 4 cut(s) 732, 911, 969, 1002
BseNI ACTGG 4 cut(s) 477, 691, 902, 1023
BseXI GCAGC 4 cut(s) 120, 142, 483, 511
BshNI GGYRCC 1 cut(s) 109
BsiHKAI GWGCWC 2 cut(s) 168, 739
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 1 cut(s) 337
BslFI GGGAC 2 cut(s) 319, 437
BslI CCNNNNNNNGG 1 cut(s) 83
BsmFI GGGAC 2 cut(s) 319, 437
BsoBI CYCGRG 1 cut(s) 281
Bsp119I TTCGAA 1 cut(s) 1003
Bsp1286I GDGCHC 2 cut(s) 168, 739
Bsp1407I TGTACA 1 cut(s) 453
Bsp143I GATC 1 cut(s) 964
BspACI CCGC 1 cut(s) 396
BspCNI CTCAG 4 cut(s) 733, 912, 968, 1003
BspLI GGNNCC 4 cut(s) 111, 335, 425, 426
BspMAI CTGCAG 2 cut(s) 19, 501
BspT104I TTCGAA 1 cut(s) 1003
BspT107I GGYRCC 1 cut(s) 109
BsrDI GCAATG 2 cut(s) 649, 1023
BsrGI TGTACA 1 cut(s) 453
BsrI ACTGG 4 cut(s) 477, 691, 902, 1023
BssECI CCNNGG 2 cut(s) 483, 621
BssMI GATC 1 cut(s) 964
BssT1I CCWWGG 2 cut(s) 483, 621
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 534, 641
BstAUI TGTACA 1 cut(s) 453
BstBI TTCGAA 1 cut(s) 1003
BstDEI CTNAG 4 cut(s) 741, 920, 955, 1011
BstF5I GGATG 1 cut(s) 424
BstH2I RGCGCY 1 cut(s) 837
BstHHI GCGC 1 cut(s) 836
BstKTI GATC 1 cut(s) 967
BstMBI GATC 1 cut(s) 964
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 2 cut(s) 115, 335
BstSFI CTRYAG 3 cut(s) 15, 497, 812
BstV1I GCAGC 4 cut(s) 120, 142, 483, 511
BstV2I GAAGAC 1 cut(s) 755
BstX2I RGATCY 1 cut(s) 964
BstXI CCANNNNNNTGG 2 cut(s) 484, 590
BstYI RGATCY 1 cut(s) 964
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 976
BtsIMutI CAGTG 2 cut(s) 976, 1030
CaiI CAGNNNCTG 2 cut(s) 23, 133
CfoI GCGC 1 cut(s) 836
Cfr13I GGNCC 3 cut(s) 333, 424, 528
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 3 cut(s) 173, 391, 454
CviAII CATG 5 cut(s) 447, 517, 590, 712, 912
CviQI GTAC 3 cut(s) 173, 391, 454
DdeI CTNAG 4 cut(s) 741, 920, 955, 1011
DpnI GATC 1 cut(s) 966
DpnII GATC 1 cut(s) 964
DraIII CACNNNGTG 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 534, 641
EarI CTCTTC 2 cut(s) 534, 641
Eco130I CCWWGG 2 cut(s) 483, 621
Eco32I GATATC 1 cut(s) 616
Eco47I GGWCC 3 cut(s) 333, 424, 528
Eco88I CYCGRG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 115
EcoRV GATATC 1 cut(s) 616
EcoT14I CCWWGG 2 cut(s) 483, 621
EcoT22I ATGCAT 2 cut(s) 307, 518
ErhI CCWWGG 2 cut(s) 483, 621
FaeI CATG 5 cut(s) 450, 520, 593, 715, 915
FaqI GGGAC 2 cut(s) 319, 437
FatI CATG 5 cut(s) 446, 516, 589, 711, 911
Fnu4HI GCNGC 5 cut(s) 15, 131, 134, 497, 500
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 5 cut(s) 15, 131, 134, 497, 500
FspBI CTAG 1 cut(s) 674
GlaI GCGC 1 cut(s) 835
GluI GCNGC 5 cut(s) 15, 131, 134, 497, 500
HaeII RGCGCY 1 cut(s) 837
HapII CCGG 1 cut(s) 337
HhaI GCGC 1 cut(s) 836
Hin1II CATG 5 cut(s) 450, 520, 593, 715, 915
Hin6I GCGC 1 cut(s) 834
HinP1I GCGC 1 cut(s) 834
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 3 cut(s) 284, 371, 792
HpaII CCGG 1 cut(s) 337
HphI GGTGA 4 cut(s) 131, 338, 610, 659
Hpy166II GTNNAC 1 cut(s) 709
Hpy188III TCNNGA 5 cut(s) 38, 183, 244, 281, 805
Hpy8I GTNNAC 1 cut(s) 709
HpyAV CCTTC 3 cut(s) 709, 829, 999
HpyCH4III ACNGT 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 4 cut(s) 741, 920, 955, 1011
Hsp92II CATG 5 cut(s) 450, 520, 593, 715, 915
HspAI GCGC 1 cut(s) 834
KflI GGGWCCC 1 cut(s) 424
Kzo9I GATC 1 cut(s) 964
LmnI GCTCC 2 cut(s) 163, 978
Lsp1109I GCAGC 4 cut(s) 120, 142, 483, 511
LweI GCATC 5 cut(s) 10, 314, 748, 798, 968
MabI ACCWGGT 1 cut(s) 115
MaeI CTAG 1 cut(s) 674
MaeIII GTNAC 1 cut(s) 285
MalI GATC 1 cut(s) 966
MboI GATC 1 cut(s) 964
MboII GAAGA 7 cut(s) 284, 422, 551, 572, 628, 760, 959
MfeI CAATTG 2 cut(s) 461, 523
MflI RGATCY 1 cut(s) 964
MhlI GDGCHC 2 cut(s) 168, 739
MluCI AATT 4 cut(s) 87, 249, 461, 523
MlyI GAGTC 2 cut(s) 293, 380
MmeI TCCRAC 1 cut(s) 748
Mph1103I ATGCAT 2 cut(s) 307, 518
MroXI GAANNNNTTC 1 cut(s) 719
MseI TTAA 2 cut(s) 342, 990
MslI CAYNNNNRTG 1 cut(s) 588
MspA1I CMGCKG 2 cut(s) 14, 133
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 2 cut(s) 117, 337
MunI CAATTG 2 cut(s) 461, 523
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 337
NdeII GATC 1 cut(s) 964
NlaIII CATG 5 cut(s) 450, 520, 593, 715, 915
NlaIV GGNNCC 4 cut(s) 111, 335, 425, 426
NmuCI GTSAC 1 cut(s) 285
NsiI ATGCAT 2 cut(s) 307, 518
NspV TTCGAA 1 cut(s) 1003
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 1 cut(s) 792
PkrI GCNGC 5 cut(s) 16, 132, 135, 498, 501
PleI GAGTC 2 cut(s) 292, 379
PpsI GAGTC 2 cut(s) 292, 379
PpuMI RGGWCCY 1 cut(s) 424
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 4 cut(s) 111, 335, 425, 426
PspPI GGNCC 3 cut(s) 333, 424, 528
PspPPI RGGWCCY 1 cut(s) 424
PstI CTGCAG 2 cut(s) 19, 501
PstNI CAGNNNCTG 2 cut(s) 23, 133
PsuI RGATCY 1 cut(s) 964
PvuII CAGCTG 2 cut(s) 14, 133
RsaI GTAC 3 cut(s) 174, 392, 455
RsaNI GTAC 3 cut(s) 173, 391, 454
RseI CAYNNNNRTG 1 cut(s) 588
SaqAI TTAA 2 cut(s) 342, 990
SatI GCNGC 5 cut(s) 15, 131, 134, 497, 500
Sau3AI GATC 1 cut(s) 964
Sau96I GGNCC 3 cut(s) 333, 424, 528
ScaI AGTACT 2 cut(s) 174, 392
SchI GAGTC 2 cut(s) 293, 380
ScrFI CCNGG 2 cut(s) 117, 337
SduI GDGCHC 2 cut(s) 168, 739
SexAI ACCWGGT 1 cut(s) 115
SfaNI GCATC 5 cut(s) 10, 314, 748, 798, 968
SfcI CTRYAG 3 cut(s) 15, 497, 812
SfuI TTCGAA 1 cut(s) 1003
SinI GGWCC 3 cut(s) 333, 424, 528
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 3 cut(s) 36, 491, 859
SmoI CTYRAG 3 cut(s) 36, 491, 859
Sse9I AATT 4 cut(s) 87, 249, 461, 523
SsiI CCGC 1 cut(s) 396
SspMI CTAG 1 cut(s) 674
StyD4I CCNGG 2 cut(s) 115, 335
StyI CCWWGG 2 cut(s) 483, 621
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 2 cut(s) 804, 1003
TaqII GACCGA 1 cut(s) 1010
TasI AATT 4 cut(s) 87, 249, 461, 523
TatI WGTACW 3 cut(s) 172, 390, 453
TfiI GAWTC 1 cut(s) 792
Tru1I TTAA 2 cut(s) 342, 990
Tru9I TTAA 2 cut(s) 342, 990
TscAI CASTG 2 cut(s) 983, 1030
TseFI GTSAC 1 cut(s) 285
TseI GCWGC 5 cut(s) 14, 130, 133, 496, 499
Tsp45I GTSAC 1 cut(s) 285
TspDTI ATGAA 6 cut(s) 423, 522, 533, 578, 728, 884
TspGWI ACGGA 2 cut(s) 176, 624
TspRI CASTG 2 cut(s) 983, 1030
VpaK11BI GGWCC 3 cut(s) 333, 424, 528
XapI RAATTY 1 cut(s) 249
XcmI CCANNNNNNNNNTGG 1 cut(s) 909
XmnI GAANNNNTTC 1 cut(s) 719
XspI CTAG 1 cut(s) 674
ZrmI AGTACT 2 cut(s) 174, 392
Zsp2I ATGCAT 2 cut(s) 307, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.