Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010769

Physical Location & Seq

Genomic Coordinates Reverse (-)

4679993 .. 4681159

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGAGCTAAGTACCATCAAAGATGCATTTGAGTGTGTCGTTAAGAAGCAAAAGCTATGTTGTTCTAAATCCCAAGACGTAATCTACCAAGTTGGTCGTGAAATTGAACAGACACTGACAGAAATCCTTTCAGCTCATGATCCCACTTCTCCTGTTGATTATAGATCTGTCCTTGCAGACCTTAAAGTCAAGCTCAATGGAATTGGCCCAATCCCCCAGTTAGAAGGGTCACATAAGGAACTAGTTGTAAGCCTTAGCAAGTACACTAAACTCCTTGAAAGGTCTTTGAATTCCGACATATCAAAAGCATACAGATATGTTGATTTTGACCATCATATTGTGAATCAGATGATTGTGAATCATTTTTATCGGGAAGGTTCATTTAATCTGGGAGATGGCATAATAGATGAGGCTGGAGAACCAGAATCAACCATTTTAAAATCTCAGTTCATGGAATTGCATCAGATAGTTGAGGCTATGAAGGTTAAGAACCTTGAGCCTGCTCTAAACTGGGTCTCGGCTAACCGTGAGAAGCTGAATCAAATTGGTTCGAATCTCGAGGTTAAACTTCATAGTTTGCAGTTTCTGGAGATTTTACAAAAGGGAAATCTAGCCAGTGCACTTCAGTATGCCAGGACTTGCCTTTCTCCTTTTGCTTCCCCTCCCTCCCCTCACAAGGATGAGGTCGTGAAGCTCATGGGTTGCCTGATATATGCTGGAAGGCTGGACAGTTCCCCATATTCTGAGATTACATCCCCAACCCATTGGGAGAAATCGATGGAGGATCTTACACGGCAGTTCTGCAGCCTCTTGGGGCAGTCTTATAATAGCCCGTTGAGTATGACAATGGCTGCTGGTTTTGAGGGGTTGCCGACTCTCTTAAAGCTGGCAAATGTAATGGCTGCAAGGAAGCAGGAGTGGCAGGCAATGAAACAATTGCCAGTACCTGTGGACTTGGGAAAGGAATTTCAGTTCCATTCAATATTTGTTTGTCCTGTGAGTAGAGATCAAGGCAGCCAAGAGAATCCACCTATGTTGATGCCGTGTTTGCATGTACTCTGCAAGCAGTCGATCTTGAAGCTGTCAAAAAGCGGCACTCGTACATTTAAATGCCCTTACTGTCCGGCGGAGGCTTCAGTTGCTCAGTGCAGACAGCTATATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

389

Amino Acids

43.58

Weight (kDa)

6.83

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	150 - 293	1.2e-35	CTLH/CRA C-terminal to LisH motif domain
zf-RING_UBOX	PF13445	331 - 372	1e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09630
fragaria_vesca	FvH4_2g11060
malus_domestica	MD10G1057900.v1.1
prunus_persica	Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1
pyrus_communis	pycom10g04460
rosa_chinensis	RchiOBHm_Chr6g0269261
rosa_laevigata	RLG00000013867
rosa_roxburghii	Rroxscaffold_7G00198900
rosa_rugosa	Rorug06G0046900 Rorug06G0047000 Rorug06G0047100 Rorug06G0047200
rosa_samantha	Rh6AG166700 Rh6BG172300 Rh6DG157800
rosa_wichuraiana	Rw6G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	825
AasI	GACNNNNNNGTC	1 cut(s)	185
AciI	CCGC	2 cut(s)	1092, 1127
AclWI	GGATC	2 cut(s)	134, 792
AcsI	RAATTY	2 cut(s)	289, 965
AcuI	CTGAAG	2 cut(s)	608, 1119
AfaI	GTAC	5 cut(s)	13, 263, 945, 1056, 1102
AfiI	CCNNNNNNNGG	1 cut(s)	676
AgsI	TTSAA	5 cut(s)	107, 278, 289, 981, 1078
AhlI	ACTAGT	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	632
AloI	GAACNNNNNNTCC	2 cut(s)	956, 988
AluBI	AGCT	9 cut(s)	7, 55, 134, 193, 535, 694, 886, 1081, 1156
AluI	AGCT	9 cut(s)	7, 55, 134, 193, 535, 694, 886, 1081, 1156
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	1 cut(s)	520
Alw44I	GTGCAC	1 cut(s)	618
AlwI	GGATC	2 cut(s)	134, 792
AlwNI	CAGNNNCTG	3 cut(s)	115, 586, 947
Ama87I	CYCGRG	1 cut(s)	557
AoxI	GGCC	1 cut(s)	205
ApaLI	GTGCAC	1 cut(s)	618
ApeKI	GCWGC	4 cut(s)	804, 851, 902, 1014
ApoI	RAATTY	2 cut(s)	289, 965
AspS9I	GGNCC	1 cut(s)	206
AsuII	TTCGAA	1 cut(s)	551
AvaI	CYCGRG	1 cut(s)	557
BaeGI	GKGCMC	1 cut(s)	622
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	4 cut(s)	816, 838, 889, 1026
BccI	CCATC	4 cut(s)	23, 339, 389, 772
BceAI	ACGGC	2 cut(s)	809, 1027
BciT130I	CCWGG	1 cut(s)	634
BcoDI	GTCTC	1 cut(s)	520
BcuI	ACTAGT	1 cut(s)	241
BfaI	CTAG	2 cut(s)	242, 611
BfmI	CTRYAG	1 cut(s)	802
BglII	AGATCT	1 cut(s)	164
BisI	GCNGC	5 cut(s)	805, 852, 903, 1015, 1093
BlsI	GCNGC	5 cut(s)	806, 853, 904, 1016, 1094
Bme1390I	CCNGG	1 cut(s)	634
BmeT110I	CYCGRG	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	634
BmrI	ACTGGG	2 cut(s)	211, 520
BmsI	GCATC	3 cut(s)	13, 469, 1029
BmuI	ACTGGG	2 cut(s)	211, 520
BpmI	CTGGAG	2 cut(s)	435, 608
Bpu10I	CCTNAGC	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	551
BpuEI	CTTGAG	1 cut(s)	515
Bsa29I	ATCGAT	1 cut(s)	776
BsaI	GGTCTC	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse1I	ACTGG	4 cut(s)	217, 515, 615, 941
Bse3DI	GCAATG	1 cut(s)	933
BseBI	CCWGG	1 cut(s)	634
BseCI	ATCGAT	1 cut(s)	776
BseGI	GGATG	2 cut(s)	685, 752
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	1 cut(s)	933
BseMII	CTCAG	3 cut(s)	458, 735, 1157
BseNI	ACTGG	4 cut(s)	217, 515, 615, 941
BseSI	GKGCMC	1 cut(s)	622
BseXI	GCAGC	4 cut(s)	816, 838, 889, 1026
BshFI	GGCC	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	776
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	1 cut(s)	1124
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	520
BsoBI	CYCGRG	1 cut(s)	557
Bsp119I	TTCGAA	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	5 cut(s)	139, 164, 784, 1006, 1071
BspACI	CCGC	2 cut(s)	1092, 1127
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	3 cut(s)	457, 736, 1156
BspDI	ATCGAT	1 cut(s)	776
BspHI	TCATGA	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	806
BspPI	GGATC	2 cut(s)	134, 792
BspT104I	TTCGAA	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	933
BsrI	ACTGG	4 cut(s)	217, 515, 615, 941
BssMI	GATC	5 cut(s)	139, 164, 784, 1006, 1071
Bst2UI	CCWGG	1 cut(s)	634
Bst4CI	ACNGT	3 cut(s)	527, 731, 1121
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	4 cut(s)	501, 888, 924, 1064
BstDEI	CTNAG	5 cut(s)	8, 254, 444, 744, 1143
BstF5I	GGATG	2 cut(s)	685, 752
BstKTI	GATC	5 cut(s)	142, 167, 787, 1009, 1074
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	5 cut(s)	139, 164, 784, 1006, 1071
BstMWI	GCNNNNNNNGC	3 cut(s)	919, 1048, 1139
BstNI	CCWGG	1 cut(s)	634
BstNSI	RCATGY	1 cut(s)	1055
BstSCI	CCNGG	1 cut(s)	632
BstSFI	CTRYAG	1 cut(s)	802
BstSLI	GKGCMC	1 cut(s)	622
BstV1I	GCAGC	4 cut(s)	816, 838, 889, 1026
BstX2I	RGATCY	2 cut(s)	164, 784
BstXI	CCANNNNNNTGG	1 cut(s)	765
BstYI	RGATCY	2 cut(s)	164, 784
Bsu15I	ATCGAT	1 cut(s)	776
BsuRI	GGCC	1 cut(s)	207
BsuTUI	ATCGAT	1 cut(s)	776
BtsCI	GGATG	2 cut(s)	685, 752
BtsIMutI	CAGTG	3 cut(s)	113, 622, 1151
Cac8I	GCNNGC	4 cut(s)	501, 888, 924, 1064
CaiI	CAGNNNCTG	3 cut(s)	115, 586, 947
CciI	TCATGA	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	206
ClaI	ATCGAT	1 cut(s)	776
Csp6I	GTAC	5 cut(s)	12, 262, 944, 1055, 1101
CspCI	CAANNNNNGTGG	2 cut(s)	1017, 1052
CviAII	CATG	4 cut(s)	137, 451, 697, 1052
CviQI	GTAC	5 cut(s)	12, 262, 944, 1055, 1101
DdeI	CTNAG	5 cut(s)	8, 254, 444, 744, 1143
DpnI	GATC	5 cut(s)	141, 166, 786, 1008, 1073
DpnII	GATC	5 cut(s)	139, 164, 784, 1006, 1071
DraI	TTTAAA	2 cut(s)	438, 1108
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	1142
Eco31I	GGTCTC	1 cut(s)	520
Eco57I	CTGAAG	2 cut(s)	608, 1119
Eco88I	CYCGRG	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	632
EcoT22I	ATGCAT	1 cut(s)	28
FaeI	CATG	4 cut(s)	140, 454, 700, 1055
FatI	CATG	4 cut(s)	136, 450, 696, 1051
Fnu4HI	GCNGC	5 cut(s)	805, 852, 903, 1015, 1093
FokI	GGATG	2 cut(s)	692, 739
Fsp4HI	GCNGC	5 cut(s)	805, 852, 903, 1015, 1093
FspBI	CTAG	2 cut(s)	242, 611
GluI	GCNGC	5 cut(s)	805, 852, 903, 1015, 1093
GsuI	CTGGAG	2 cut(s)	435, 608
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	1124
Hin1II	CATG	4 cut(s)	140, 454, 700, 1055
HinfI	GANTC	7 cut(s)	343, 358, 425, 538, 553, 874, 1024
HpaII	CCGG	1 cut(s)	1124
Hpy166II	GTNNAC	3 cut(s)	264, 620, 952
Hpy188I	TCNGA	5 cut(s)	295, 348, 465, 745, 1166
Hpy188III	TCNNGA	7 cut(s)	98, 137, 371, 557, 587, 688, 1075
Hpy8I	GTNNAC	3 cut(s)	264, 620, 952
HpyAV	CCTTC	4 cut(s)	218, 368, 475, 714
HpyCH4III	ACNGT	3 cut(s)	527, 731, 1121
HpyCH4IV	ACGT	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	3 cut(s)	919, 1048, 1139
HpyF3I	CTNAG	5 cut(s)	8, 254, 444, 744, 1143
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	140, 454, 700, 1055
Kzo9I	GATC	5 cut(s)	139, 164, 784, 1006, 1071
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	4 cut(s)	816, 838, 889, 1026
LweI	GCATC	3 cut(s)	13, 469, 1029
MaeI	CTAG	2 cut(s)	242, 611
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	5 cut(s)	141, 166, 786, 1008, 1073
MboI	GATC	5 cut(s)	139, 164, 784, 1006, 1071
MfeI	CAATTG	1 cut(s)	935
MflI	RGATCY	2 cut(s)	164, 784
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	7 cut(s)	102, 201, 289, 455, 543, 935, 965
MlyI	GAGTC	1 cut(s)	868
MmeI	TCCRAC	1 cut(s)	318
Mph1103I	ATGCAT	1 cut(s)	28
MseI	TTAA	8 cut(s)	42, 183, 384, 437, 486, 564, 881, 1107
MslI	CAYNNNNRTG	3 cut(s)	31, 678, 1108
MspI	CCGG	1 cut(s)	1124
MspR9I	CCNGG	1 cut(s)	634
MunI	CAATTG	1 cut(s)	935
MvaI	CCWGG	1 cut(s)	634
MwoI	GCNNNNNNNGC	3 cut(s)	919, 1048, 1139
NdeII	GATC	5 cut(s)	139, 164, 784, 1006, 1071
NlaIII	CATG	4 cut(s)	140, 454, 700, 1055
NmeAIII	GCCGAG	1 cut(s)	497
NmuCI	GTSAC	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	28
NspI	RCATGY	1 cut(s)	1055
NspV	TTCGAA	1 cut(s)	551
PaeR7I	CTCGAG	1 cut(s)	557
PagI	TCATGA	1 cut(s)	136
PfeI	GAWTC	6 cut(s)	343, 358, 425, 538, 553, 1024
PkrI	GCNGC	5 cut(s)	806, 853, 904, 1016, 1094
PleI	GAGTC	1 cut(s)	868
PpsI	GAGTC	1 cut(s)	868
PsiI	TTATAA	1 cut(s)	825
Psp6I	CCWGG	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	632
PspPI	GGNCC	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	806
PstNI	CAGNNNCTG	3 cut(s)	115, 586, 947
PsuI	RGATCY	2 cut(s)	164, 784
RsaI	GTAC	5 cut(s)	13, 263, 945, 1056, 1102
RsaNI	GTAC	5 cut(s)	12, 262, 944, 1055, 1101
RseI	CAYNNNNRTG	3 cut(s)	31, 678, 1108
SaqAI	TTAA	8 cut(s)	42, 183, 384, 437, 486, 564, 881, 1107
SatI	GCNGC	5 cut(s)	805, 852, 903, 1015, 1093
Sau3AI	GATC	5 cut(s)	139, 164, 784, 1006, 1071
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	868
ScrFI	CCNGG	1 cut(s)	634
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	3 cut(s)	13, 469, 1029
SfcI	CTRYAG	1 cut(s)	802
Sfr274I	CTCGAG	1 cut(s)	557
SfuI	TTCGAA	1 cut(s)	551
SlaI	CTCGAG	1 cut(s)	557
SmiI	ATTTAAAT	1 cut(s)	1108
SmiMI	CAYNNNNRTG	3 cut(s)	31, 678, 1108
SmlI	CTYRAG	2 cut(s)	494, 557
SmoI	CTYRAG	2 cut(s)	494, 557
SpeI	ACTAGT	1 cut(s)	241
Sse9I	AATT	7 cut(s)	102, 201, 289, 455, 543, 935, 965
SsiI	CCGC	2 cut(s)	1092, 1127
SspI	AATATT	1 cut(s)	984
SspMI	CTAG	2 cut(s)	242, 611
StyD4I	CCNGG	1 cut(s)	632
SwaI	ATTTAAAT	1 cut(s)	1108
TaaI	ACNGT	3 cut(s)	527, 731, 1121
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	4 cut(s)	551, 558, 776, 1070
TasI	AATT	7 cut(s)	102, 201, 289, 455, 543, 935, 965
TatI	WGTACW	2 cut(s)	261, 1054
TauI	GCSGC	1 cut(s)	1095
TfiI	GAWTC	6 cut(s)	343, 358, 425, 538, 553, 1024
Tru1I	TTAA	8 cut(s)	42, 183, 384, 437, 486, 564, 881, 1107
Tru9I	TTAA	8 cut(s)	42, 183, 384, 437, 486, 564, 881, 1107
TscAI	CASTG	3 cut(s)	120, 622, 1151
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	4 cut(s)	804, 851, 902, 1014
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	5 cut(s)	369, 439, 494, 560, 944
TspRI	CASTG	3 cut(s)	120, 622, 1151
VneI	GTGCAC	1 cut(s)	618
XapI	RAATTY	2 cut(s)	289, 965
XceI	RCATGY	1 cut(s)	1055
XhoI	CTCGAG	1 cut(s)	557
XspI	CTAG	2 cut(s)	242, 611
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.