pycom10g04720

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0017886
Physical Location & Seq
Forward (+)
4949421 .. 4949735
315 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGGGCATCAGAAAACCAAACAAACTGGCTCAAACCGCAGTGCTCAAGCAAATCCTGAAAAGATGCTCGAGCTTGGGAAAGAAACATGGCTACGACGAAGATGGTCTTCCCATTGATGTCCCAAAAGGCCATTTCCCAGTTTACGTTGGCGAGAACAGAACAAGGTACATTGTTCCCATCTCGTTCTTGACACATCCTCAGTTCCAATGCCTCCTCCGCCAAGCCGAAGAGGAATTTGGCTTCGATCACGACATGGGCCTCACCATCCCCTGCGAAGAAGAAGTTTTTCGATCCCTAACGTCGATGCTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

105

Amino Acids

11.89

Weight (kDa)

7.75

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 27 - 103 1.1e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21220 AT4G38860
fragaria_vesca FvH4_2g10770
prunus_persica Prupe.8G082100_v2.0.a1
pyrus_communis pycom10g04720
rosa_chinensis RchiOBHm_Chr6g0268551
rosa_laevigata RLG00000013901
rosa_multiflora Rmu_sc0005121.1_g000005
rosa_rugosa Rorug06G0043100
rosa_wichuraiana Rw0G004760 Rw6G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 36, 217
AclWI GGATC 1 cut(s) 285
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 1 cut(s) 167
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 45
AlwI GGATC 1 cut(s) 285
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 2 cut(s) 127, 256
ApoI RAATTY 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 45
BccI CCATC 3 cut(s) 95, 185, 272
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 256
BmrI ACTGGG 1 cut(s) 131
BmsI GCATC 3 cut(s) 15, 53, 294
BmuI ACTGGG 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 30, 137
BseGI GGATG 2 cut(s) 193, 264
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 2 cut(s) 30, 137
BseRI GAGGAG 1 cut(s) 203
BshFI GGCC 2 cut(s) 129, 258
BsiHKAI GWGCWC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 67
BslFI GGGAC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 2 cut(s) 129, 258
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 244, 290
BspACI CCGC 2 cut(s) 36, 217
BspANI GGCC 2 cut(s) 129, 258
BspCNI CTCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 285
BsrI ACTGG 2 cut(s) 30, 137
BssMI GATC 2 cut(s) 244, 290
Bst6I CTCTTC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 193, 264
BstKTI GATC 2 cut(s) 247, 293
BstMBI GATC 2 cut(s) 244, 290
BstMWI GCNNNNNNNGC 2 cut(s) 35, 216
BstV2I GAAGAC 1 cut(s) 98
BsuRI GGCC 2 cut(s) 129, 258
BtsCI GGATG 2 cut(s) 193, 264
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 166
CviAII CATG 2 cut(s) 86, 253
CviJI RGCY 7 cut(s) 29, 72, 90, 129, 224, 240, 258
CviKI_1 RGCY 7 cut(s) 29, 72, 90, 129, 224, 240, 258
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 246, 292
DpnII GATC 2 cut(s) 244, 290
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
EciI GGCGGA 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 67
FaeI CATG 2 cut(s) 89, 256
FaiI YATR 2 cut(s) 87, 254
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FaqI GGGAC 1 cut(s) 104
FatI CATG 2 cut(s) 85, 252
FokI GGATG 2 cut(s) 180, 251
HaeIII GGCC 2 cut(s) 129, 258
Hin1II CATG 2 cut(s) 89, 256
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 3 cut(s) 55, 187, 248
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 2 cut(s) 98, 304
HpyCH4IV ACGT 2 cut(s) 144, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 216
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 2 cut(s) 144, 299
Hsp92II CATG 2 cut(s) 89, 256
Kzo9I GATC 2 cut(s) 244, 290
LpnPI CCDG 4 cut(s) 11, 68, 150, 283
LweI GCATC 3 cut(s) 15, 53, 294
MaeII ACGT 2 cut(s) 144, 299
MalI GATC 2 cut(s) 246, 292
MboI GATC 2 cut(s) 244, 290
MboII GAAGA 5 cut(s) 98, 110, 239, 287, 290
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 233
MnlI CCTC 5 cut(s) 207, 221, 223, 224, 269
MroXI GAANNNNTTC 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 35, 216
NdeII GATC 2 cut(s) 244, 290
NlaIII CATG 2 cut(s) 89, 256
PaeR7I CTCGAG 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 256
PspXI VCTCGAGB 1 cut(s) 67
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
Sau3AI GATC 2 cut(s) 244, 290
Sau96I GGNCC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 45
SetI ASST 4 cut(s) 74, 147, 167, 302
SfaNI GCATC 3 cut(s) 15, 53, 294
Sfr274I CTCGAG 1 cut(s) 67
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 2 cut(s) 44, 67
SmoI CTYRAG 2 cut(s) 44, 67
Sse9I AATT 1 cut(s) 233
SsiI CCGC 2 cut(s) 36, 217
TaiI ACGT 2 cut(s) 147, 302
TaqI TCGA 4 cut(s) 68, 243, 289, 302
TasI AATT 1 cut(s) 233
TscAI CASTG 1 cut(s) 45
TspRI CASTG 1 cut(s) 45
XapI RAATTY 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.