Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0018536

Physical Location & Seq

Genomic Coordinates Forward (+)

7644733 .. 7646112

Gene Structure 1380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g06550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAGGATTGCTTGGGCAGCGACGAGGAGTACTATTACTCCGATCAGGACTCTCTCGACGTCATCGAGAATGAAGACTGTGATCTTCAGTGGATTCCCCCCAAGGGCGCCACTACTAAGGTGATTACCAAAGAATCTCTTTTGACTGCACAGAAGGAGGATTTGCGCAGGGTGATGGACATGCTATTCCTTAGGGAGCACCATGCCAGGACTTTACTTATTCATCATCGCTGGGATGTTGATAAGCTTTTTGCAGTGTATGTAGAGAAGGGAAAATCTTGGTTGTTTGCTGAAGCAGGTGTAACTGTCGTTGAGCATCACGATCTCGATCCATCACCTCCCAATTCACCAGTAATGTGTGCTATTTGTATAGAAGATGTACCTAGTAATGAGACGACAAAAATGGATTGTGGACATTGCTTTTGCAACACTTGTTGGACAGAGCATTTCGTCGTAAAGATAAATGAGGGTCAAAGTAAGCGCATTAGGTGCATGGCTCACAAATGCAATGCCATTTGTGATGAAGCCGTTGTCAGAAATCTAGTCAGTAAGAAGCATCCCCAGCTTGCTGAAAAATTTGACCGTTTTCTTCTTGAGTCATATATTGAGGACAATAAAAGGGTTAAGTGGTGCCCAAGCACTCCTCATTGTGGGAATGCAATACGCGTGGAGGATCGATCAGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

230

Amino Acids

26.43

Weight (kDa)

5.45

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_ARI1	PF21235	50 - 89	1.3e-08	E3 ubiquitin-protein ligase ARIH1, UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018536)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g06550
rosa_chinensis	RchiOBHm_Chr1g0314591
rosa_laevigata	RLG00000022053 RLG00000032821
rosa_multiflora	Rmu_sc0002370.1_g000019
rosa_samantha	Rh1AG011500 Rh2AG552600 Rh2DG464900
rosa_wichuraiana	Rw0G018450 Rw7G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
AatII	GACGTC	1 cut(s)	63
Acc16I	TGCGCA	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	287
AccB1I	GGYRCC	2 cut(s)	107, 630
AccII	CGCG	1 cut(s)	666
AclWI	GGATC	2 cut(s)	323, 681
AcsI	RAATTY	1 cut(s)	575
AcuI	CTGAAG	2 cut(s)	71, 312
AcyI	GRCGYC	2 cut(s)	60, 108
AfaI	GTAC	2 cut(s)	32, 381
AfiI	CCNNNNNNNGG	2 cut(s)	104, 650
AflIII	ACRYGT	1 cut(s)	664
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	2 cut(s)	247, 565
AluI	AGCT	2 cut(s)	247, 565
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	2 cut(s)	323, 681
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	575
ArsI	GACNNNNNNTTYG	2 cut(s)	405, 437
AspLEI	GCGC	3 cut(s)	110, 168, 483
AsuHPI	GGTGA	4 cut(s)	133, 184, 327, 339
AxyI	CCTNAGG	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	635
BanI	GGYRCC	2 cut(s)	107, 630
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	2 cut(s)	169, 340
BceAI	ACGGC	1 cut(s)	512
BciT130I	CCWGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	2 cut(s)	384, 542
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	287
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	109, 632
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	2 cut(s)	325, 565
BpiI	GAAGAC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	614
Bsa29I	ATCGAT	1 cut(s)	676
BsaBI	GATNNNNATC	1 cut(s)	327
BsaHI	GRCGYC	2 cut(s)	60, 108
BsaJI	CCNNGG	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 650
Bse1I	ACTGG	1 cut(s)	350
Bse21I	CCTNAGG	1 cut(s)	191
Bse3DI	GCAATG	2 cut(s)	415, 514
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	676
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	241, 556
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	104, 650
BseMI	GCAATG	2 cut(s)	415, 514
BseNI	ACTGG	1 cut(s)	350
BseRI	GAGGAG	2 cut(s)	41, 633
BseSI	GKGCMC	1 cut(s)	635
BseXI	GCAGC	1 cut(s)	30
BseYI	CCCAGC	2 cut(s)	231, 561
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	666
BshNI	GGYRCC	2 cut(s)	107, 630
BshVI	ATCGAT	1 cut(s)	676
BsiHKAI	GWGCWC	1 cut(s)	201
BslI	CCNNNNNNNGG	2 cut(s)	104, 650
BsmAI	GTCTC	1 cut(s)	386
BsmBI	CGTCTC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	661
Bsp1286I	GDGCHC	2 cut(s)	201, 635
Bsp143I	GATC	6 cut(s)	43, 82, 322, 328, 673, 677
BspDI	ATCGAT	1 cut(s)	676
BspFNI	CGCG	1 cut(s)	666
BspLI	GGNNCC	2 cut(s)	109, 632
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	2 cut(s)	323, 681
BspT107I	GGYRCC	2 cut(s)	107, 630
BsrDI	GCAATG	2 cut(s)	415, 514
BsrI	ACTGG	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	6 cut(s)	43, 82, 322, 328, 673, 677
BssNI	GRCGYC	2 cut(s)	60, 108
BssT1I	CCWWGG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	3 cut(s)	80, 307, 584
BstACI	GRCGYC	2 cut(s)	60, 108
BstAPI	GCANNNNNTGC	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	2 cut(s)	117, 191
BstF5I	GGATG	2 cut(s)	241, 556
BstFNI	CGCG	1 cut(s)	666
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	3 cut(s)	110, 168, 483
BstKTI	GATC	6 cut(s)	46, 85, 325, 331, 676, 680
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	6 cut(s)	43, 82, 322, 328, 673, 677
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 489, 562
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	206
BstSLI	GKGCMC	1 cut(s)	635
BstUI	CGCG	1 cut(s)	666
BstV1I	GCAGC	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	676
Bsu36I	CCTNAGG	1 cut(s)	191
BsuTUI	ATCGAT	1 cut(s)	676
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	241, 556
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	95, 261
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	567
CfoI	GCGC	3 cut(s)	110, 168, 483
ClaI	ATCGAT	1 cut(s)	676
Csp6I	GTAC	2 cut(s)	31, 380
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CviAII	CATG	3 cut(s)	181, 203, 493
CviJI	RGCY	4 cut(s)	247, 497, 527, 565
CviKI_1	RGCY	4 cut(s)	247, 497, 527, 565
CviQI	GTAC	2 cut(s)	31, 380
DdeI	CTNAG	2 cut(s)	117, 191
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	6 cut(s)	45, 84, 324, 330, 675, 679
DpnII	GATC	6 cut(s)	43, 82, 322, 328, 673, 677
Eco130I	CCWWGG	1 cut(s)	102
Eco57I	CTGAAG	2 cut(s)	71, 312
Eco81I	CCTNAGG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	102
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	3 cut(s)	184, 206, 496
FaiI	YATR	7 cut(s)	182, 204, 261, 371, 494, 601, 603
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	3 cut(s)	180, 202, 492
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	2 cut(s)	248, 543
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	2 cut(s)	384, 542
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	3 cut(s)	109, 167, 482
GluI	GCNGC	1 cut(s)	19
GsaI	CCCAGC	2 cut(s)	235, 565
HaeII	RGCGCY	1 cut(s)	111
HhaI	GCGC	3 cut(s)	110, 168, 483
Hin1I	GRCGYC	2 cut(s)	60, 108
Hin1II	CATG	3 cut(s)	184, 206, 496
Hin6I	GCGC	3 cut(s)	108, 166, 481
HinP1I	GCGC	3 cut(s)	108, 166, 481
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	4 cut(s)	50, 94, 134, 596
HphI	GGTGA	4 cut(s)	133, 184, 327, 339
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	2 cut(s)	43, 536
Hpy188III	TCNNGA	6 cut(s)	47, 56, 67, 320, 326, 593
Hpy8I	GTNNAC	1 cut(s)	413
Hpy99I	CGWCG	3 cut(s)	26, 62, 455
HpyAV	CCTTC	2 cut(s)	148, 262
HpyCH4III	ACNGT	3 cut(s)	80, 307, 584
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	6 cut(s)	149, 254, 426, 492, 507, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 489, 562
HpyF3I	CTNAG	2 cut(s)	117, 191
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	2 cut(s)	60, 108
Hsp92II	CATG	3 cut(s)	184, 206, 496
HspAI	GCGC	3 cut(s)	108, 166, 481
KasI	GGCGCC	1 cut(s)	107
Kzo9I	GATC	6 cut(s)	43, 82, 322, 328, 673, 677
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	8 cut(s)	32, 154, 193, 217, 220, 282, 363, 575
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	2 cut(s)	325, 565
MaeI	CTAG	2 cut(s)	384, 542
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	6 cut(s)	45, 84, 324, 330, 675, 679
MboI	GATC	6 cut(s)	43, 82, 322, 328, 673, 677
MboII	GAAGA	4 cut(s)	77, 86, 386, 581
MhlI	GDGCHC	2 cut(s)	201, 635
MluCI	AATT	2 cut(s)	343, 575
MluI	ACGCGT	1 cut(s)	664
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	2 cut(s)	44, 605
MmeI	TCCRAC	1 cut(s)	416
MnlI	CCTC	7 cut(s)	19, 151, 348, 460, 601, 654, 664
MseI	TTAA	1 cut(s)	624
MspR9I	CCNGG	1 cut(s)	208
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	3 cut(s)	18, 489, 562
NarI	GGCGCC	1 cut(s)	108
NdeII	GATC	6 cut(s)	43, 82, 322, 328, 673, 677
NlaIII	CATG	3 cut(s)	184, 206, 496
NlaIV	GGNNCC	2 cut(s)	109, 632
NsbI	TGCGCA	1 cut(s)	167
NspI	RCATGY	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	661
PfeI	GAWTC	2 cut(s)	94, 134
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	2 cut(s)	44, 604
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	2 cut(s)	44, 604
Psp6I	CCWGG	1 cut(s)	206
PspFI	CCCAGC	2 cut(s)	231, 561
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	2 cut(s)	109, 632
RsaI	GTAC	2 cut(s)	32, 381
RsaNI	GTAC	2 cut(s)	31, 380
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	6 cut(s)	43, 82, 322, 328, 673, 677
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	2 cut(s)	44, 605
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	2 cut(s)	201, 635
SetI	ASST	8 cut(s)	63, 123, 249, 301, 340, 385, 491, 567
SfaNI	GCATC	2 cut(s)	325, 565
SfoI	GGCGCC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	2 cut(s)	343, 575
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	2 cut(s)	384, 542
StyD4I	CCNGG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	3 cut(s)	80, 307, 584
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	4 cut(s)	57, 66, 327, 676
TasI	AATT	2 cut(s)	343, 575
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	94, 134
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	2 cut(s)	95, 261
TseI	GCWGC	1 cut(s)	18
TspDTI	ATGAA	3 cut(s)	87, 212, 537
TspRI	CASTG	2 cut(s)	95, 261
XapI	RAATTY	1 cut(s)	575
XceI	RCATGY	1 cut(s)	184
XspI	CTAG	2 cut(s)	384, 542
ZraI	GACGTC	1 cut(s)	61
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.