Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018536

Physical Location & Seq

Genomic Coordinates Forward (+)

1848415 .. 1849448

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG011500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 280 bp

ATGAACATCTTCTCCAACCCAATGCCAAAGAGACTTCGGGAAAGCAAGAGAGAAATGGCTAATGGTACTAGAGGTTCGTTAGCCTTGACTTCCCCTGCTAAAGTGATTACTAAAGAATCTCTTTTGGTGGCACAGAAGGAGGATTTGCGTAGAGTGATGGACTTGCTATTTCTGAGGGAGCACCATGCCCGAACTTTACTCATCCATCACCGGTGGGATGTTGAGAAGCTTTTTGTAGTGCTTGTAGAGAAGGGAAGAGCTTTCTTGTTTGCAGAAGCAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

93

Amino Acids

10.81

Weight (kDa)

10.34

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_ARI1	PF21235	44 - 78	1.8e-08	E3 ubiquitin-protein ligase ARIH1, UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018536)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g06550
rosa_chinensis	RchiOBHm_Chr1g0314591
rosa_laevigata	RLG00000022053 RLG00000032821
rosa_multiflora	Rmu_sc0002370.1_g000019
rosa_samantha	Rh1AG011500 Rh2AG552600 Rh2DG464900
rosa_wichuraiana	Rw0G018450 Rw7G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	67
AgeI	ACCGGT	1 cut(s)	210
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	229, 260
AluI	AGCT	2 cut(s)	229, 260
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	25
AsiGI	ACCGGT	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	183
BccI	CCATC	2 cut(s)	151, 213
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	210
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	210
BseGI	GGATG	2 cut(s)	201, 223
BseMII	CTCAG	1 cut(s)	164
BshTI	ACCGGT	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	201, 223
BstMAI	GTCTC	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	201, 223
Cfr10I	RCCGGY	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	66
CspAI	ACCGGT	1 cut(s)	210
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	4 cut(s)	59, 83, 229, 260
CviKI_1	RGCY	4 cut(s)	59, 83, 229, 260
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
FaeI	CATG	1 cut(s)	188
FaiI	YATR	1 cut(s)	186
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	1 cut(s)	184
FokI	GGATG	2 cut(s)	188, 230
FspBI	CTAG	1 cut(s)	69
HapII	CCGG	1 cut(s)	211
Hin1II	CATG	1 cut(s)	188
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	130, 244
HpyCH4V	TGCA	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	188
LguI	GCTCTTC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	2 cut(s)	108, 224
MaeI	CTAG	1 cut(s)	69
MboII	GAAGA	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	3 cut(s)	65, 133, 168
MroXI	GAANNNNTTC	1 cut(s)	8
MspI	CCGG	1 cut(s)	211
NlaIII	CATG	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	116
PinAI	ACCGGT	1 cut(s)	210
PsrI	GAACNNNNNNTAC	2 cut(s)	58, 90
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	3 cut(s)	76, 231, 262
SgrAI	CRCCGGYG	1 cut(s)	210
SspMI	CTAG	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.