Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018536

Physical Location & Seq

Genomic Coordinates Forward (+)

80326042 .. 80327973

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022053

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATCGCACAAGCTGGGCTTGCCCTCTTTTATGGCCGTCCCTTGAGTGGCGGTGCTCGGTTGCCCTGTGGCGCTTTTTCCTTTGCTTCTGGTTTTCTGGTGGCGAAGACTGAATTTGATGATGGATCTTCTGGCTGCGTTGATGGAGGCTCTACTCTCGTTTTTTCGCTCTTTGTTGGCGAGGGTGGTCGGCTCGATATTGATGGCGGCGGGTTGATATCTGGATCGGCTATCAAGGCGAGTGATGGTGGCTTCGACATTGAAGGTAGCGATGAGGAGTTCTATACCTCCGATCAGGAAGACGATTACTCTATCGACGGCCTCGAGGAGTCCATCGATGGCCTTGAAAACGATGACTCTGATACTCCCTGGATTCCCCCTAAGGGCACCACAACTAAGGTGATTACTAAAGGATCTCTTTTGGCTGCACAGAAGGAGGATTTGCGTAGAGTGATGGACTTGCTATTTCTGAGGGAGCACCATGCCGGAACTTTACTCATACATCACCGGTGGGATGTTGAGAAGGTTTTTGTAGTGCTTGTAGAGAAGGGAAGAGCTTTCTTGTTTGTAGAAGCAGGTGTATCTATAGTTGAACGCACATCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

203

Amino Acids

21.63

Weight (kDa)

4.5

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_ARI1	PF21235	143 - 176	6.3e-06	E3 ubiquitin-protein ligase ARIH1, UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018536)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g06550
rosa_chinensis	RchiOBHm_Chr1g0314591
rosa_laevigata	RLG00000022053 RLG00000032821
rosa_multiflora	Rmu_sc0002370.1_g000019
rosa_samantha	Rh1AG011500 Rh2AG552600 Rh2DG464900
rosa_wichuraiana	Rw0G018450 Rw7G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	566
AbsI	CCTCGAGG	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	386
AciI	CCGC	3 cut(s)	51, 207, 210
AclWI	GGATC	3 cut(s)	133, 232, 421
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	47, 383
AgeI	ACCGGT	1 cut(s)	507
AgsI	TTSAA	3 cut(s)	263, 347, 593
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	2 cut(s)	14, 557
AluI	AGCT	2 cut(s)	14, 557
Alw21I	GWGCWC	2 cut(s)	58, 480
AlwI	GGATC	3 cut(s)	133, 232, 421
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	3 cut(s)	34, 319, 340
ApeKI	GCWGC	2 cut(s)	135, 425
ApoI	RAATTY	1 cut(s)	113
AsiGI	ACCGGT	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	412, 497
AvaI	CYCGRG	1 cut(s)	323
AxyI	CCTNAGG	1 cut(s)	381
BaeGI	GKGCMC	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	386
BbsI	GAAGAC	2 cut(s)	113, 306
Bbv12I	GWGCWC	2 cut(s)	58, 480
BbvI	GCAGC	2 cut(s)	122, 412
BccI	CCATC	7 cut(s)	116, 137, 197, 239, 332, 341, 448
BceAI	ACGGC	2 cut(s)	21, 334
BciT130I	CCWGG	1 cut(s)	370
BfmI	CTRYAG	1 cut(s)	585
BfoI	RGCGCY	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	566
BisI	GCNGC	3 cut(s)	136, 208, 426
BlsI	GCNGC	3 cut(s)	137, 209, 427
Bme1390I	CCNGG	1 cut(s)	370
BmeT110I	CYCGRG	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	1 cut(s)	370
BpiI	GAAGAC	2 cut(s)	113, 306
BpuEI	CTTGAG	1 cut(s)	64
Bsa29I	ATCGAT	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 383
Bse118I	RCCGGY	1 cut(s)	507
Bse21I	CCTNAGG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	370
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	2 cut(s)	47, 383
BseMII	CTCAG	1 cut(s)	461
BseRI	GAGGAG	2 cut(s)	290, 341
BseSI	GKGCMC	1 cut(s)	389
BseXI	GCAGC	2 cut(s)	122, 412
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	411
BshFI	GGCC	3 cut(s)	36, 321, 342
BshNI	GGYRCC	1 cut(s)	386
BshTI	ACCGGT	1 cut(s)	507
BshVI	ATCGAT	1 cut(s)	336
BsiHKAI	GWGCWC	2 cut(s)	58, 480
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	486, 508
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	47, 383
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	3 cut(s)	36, 321, 342
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	3 cut(s)	58, 389, 480
Bsp143I	GATC	5 cut(s)	3, 125, 224, 292, 413
BspACI	CCGC	3 cut(s)	51, 207, 210
BspANI	GGCC	3 cut(s)	36, 321, 342
BspCNI	CTCAG	1 cut(s)	462
BspDI	ATCGAT	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	388
BspMI	ACCTGC	1 cut(s)	566
BspPI	GGATC	3 cut(s)	133, 232, 421
BspQI	GCTCTTC	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	507
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	5 cut(s)	3, 125, 224, 292, 413
Bst2UI	CCWGG	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	3 cut(s)	381, 396, 470
BstF5I	GGATG	1 cut(s)	520
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	5 cut(s)	6, 128, 227, 295, 416
BstMBI	GATC	5 cut(s)	3, 125, 224, 292, 413
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 236
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	585
BstSLI	GKGCMC	1 cut(s)	389
BstV1I	GCAGC	2 cut(s)	122, 412
BstV2I	GAAGAC	2 cut(s)	113, 306
BstX2I	RGATCY	2 cut(s)	125, 413
BstYI	RGATCY	2 cut(s)	125, 413
Bsu15I	ATCGAT	1 cut(s)	336
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	3 cut(s)	36, 321, 342
BsuTUI	ATCGAT	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	520
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	507
ClaI	ATCGAT	1 cut(s)	336
CspAI	ACCGGT	1 cut(s)	507
CviAII	CATG	1 cut(s)	482
DdeI	CTNAG	3 cut(s)	381, 396, 470
DpnI	GATC	5 cut(s)	5, 127, 226, 294, 415
DpnII	GATC	5 cut(s)	3, 125, 224, 292, 413
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	547
Eco32I	GATATC	1 cut(s)	219
Eco81I	CCTNAGG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	219
FaeI	CATG	1 cut(s)	485
FaiI	YATR	5 cut(s)	33, 285, 483, 500, 587
FalI	AAGNNNNNCTT	3 cut(s)	35, 402, 434
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	1 cut(s)	481
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	3 cut(s)	136, 208, 426
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	136, 208, 426
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	3 cut(s)	136, 208, 426
GsaI	CCCAGC	1 cut(s)	18
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	36, 321, 342
HapII	CCGG	2 cut(s)	486, 508
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	485
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	3 cut(s)	329, 356, 373
HpaII	CCGG	2 cut(s)	486, 508
HphI	GGTGA	2 cut(s)	412, 497
Hpy188I	TCNGA	3 cut(s)	292, 361, 471
Hpy188III	TCNNGA	3 cut(s)	222, 296, 603
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	4 cut(s)	257, 427, 517, 541
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 236
HpyF3I	CTNAG	3 cut(s)	381, 396, 470
Hsp92II	CATG	1 cut(s)	485
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	5 cut(s)	3, 125, 224, 292, 413
LguI	GCTCTTC	1 cut(s)	547
LmnI	GCTCC	1 cut(s)	475
Lsp1109I	GCAGC	2 cut(s)	122, 412
MalI	GATC	5 cut(s)	5, 127, 226, 294, 415
MboI	GATC	5 cut(s)	3, 125, 224, 292, 413
MboII	GAAGA	4 cut(s)	118, 120, 311, 564
MflI	RGATCY	2 cut(s)	125, 413
MhlI	GDGCHC	3 cut(s)	58, 389, 480
MluCI	AATT	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	338, 350
MnlI	CCTC	9 cut(s)	35, 140, 175, 268, 298, 319, 332, 430, 465
MspI	CCGG	2 cut(s)	486, 508
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	2 cut(s)	20, 236
NdeII	GATC	5 cut(s)	3, 125, 224, 292, 413
NlaIII	CATG	1 cut(s)	485
NlaIV	GGNNCC	1 cut(s)	388
PaeR7I	CTCGAG	1 cut(s)	323
PaqCI	CACCTGC	1 cut(s)	566
PciSI	GCTCTTC	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	373
PinAI	ACCGGT	1 cut(s)	507
PkrI	GCNGC	3 cut(s)	137, 209, 427
PleI	GAGTC	2 cut(s)	337, 350
PpsI	GAGTC	2 cut(s)	337, 350
Psp6I	CCWGG	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	388
PspXI	VCTCGAGB	1 cut(s)	323
PsuI	RGATCY	2 cut(s)	125, 413
SapI	GCTCTTC	1 cut(s)	547
SatI	GCNGC	3 cut(s)	136, 208, 426
Sau3AI	GATC	5 cut(s)	3, 125, 224, 292, 413
SchI	GAGTC	2 cut(s)	338, 350
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	3 cut(s)	58, 389, 480
SetI	ASST	7 cut(s)	16, 268, 290, 402, 528, 559, 580
SfcI	CTRYAG	1 cut(s)	585
Sfr274I	CTCGAG	1 cut(s)	323
SgrAI	CRCCGGYG	1 cut(s)	507
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	43, 323
SmoI	CTYRAG	2 cut(s)	43, 323
Sse9I	AATT	1 cut(s)	113
SsiI	CCGC	3 cut(s)	51, 207, 210
StyD4I	CCNGG	1 cut(s)	368
TaqI	TCGA	5 cut(s)	195, 255, 315, 324, 336
TasI	AATT	1 cut(s)	113
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	373
TseI	GCWGC	2 cut(s)	135, 425
XapI	RAATTY	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.