Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0018536

Physical Location & Seq

Genomic Coordinates Forward (+)

19445507 .. 19447840

Gene Structure 2334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032821

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCAGAGACTCGCGGTGGAGCTTTCTGGCGGTGCGTCGAAACTTCTGCAACTTGTCAACGACGTCGTTGGCGCTGGAAACGATAAGGAGTTCTATACCTCCGATCAGGAAGATGATTACTCTATCGACGGCCTCGAGGAGTCCATCGATGGCCTTGGAAACGATGACTCTGATACTCCTTGGATTCCCCCTAAGGACACCACAACTAAGGTGATTACTAAAGGATCTCTTTTGGCTGCACAGAAGGAGGATTTGCGTAGAGTGATGGACTTGCTATTTCTGAGGGAGCACCATGCCGGAACTTTACTCATACATCACCGGTGGGATGTTGAGAAGGTTTTTGTAGTGCTTGTAGAGAAGGGAAGAGCTTTCTTGTTTGTAGAAGCAGCCCCGCAGCCTAATCCTGGTGACCAACTCGATCTTCGCACTCTGCGATGTCGGCTCGCCGTGGAGGAGCCAGTAGAAGTTGTTCGCGTGCACCATTTCGAAGCTGAGGAGCTCGTAGACGTGGACGAGGCTCGAGAAGTAGGACTGGGTGGACGTGCTCAACATTTTGAAACGGCCTTGTTTGGTTCGCTGGGAGCAAGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

198

Amino Acids

21.88

Weight (kDa)

4.75

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_ARI1	PF21235	80 - 113	6e-06	E3 ubiquitin-protein ligase ARIH1, UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018536)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g06550
rosa_chinensis	RchiOBHm_Chr1g0314591
rosa_laevigata	RLG00000022053 RLG00000032821
rosa_multiflora	Rmu_sc0002370.1_g000019
rosa_samantha	Rh1AG011500 Rh2AG552600 Rh2DG464900
rosa_wichuraiana	Rw0G018450 Rw7G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
AbsI	CCTCGAGG	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	504
AccII	CGCG	2 cut(s)	14, 474
AciI	CCGC	3 cut(s)	14, 30, 392
AclWI	GGATC	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgeI	ACCGGT	1 cut(s)	318
AgsI	TTSAA	1 cut(s)	557
AjiI	CACGTC	2 cut(s)	508, 542
AjnI	CCWGG	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	4 cut(s)	22, 368, 491, 499
AluI	AGCT	4 cut(s)	22, 368, 491, 499
Alw21I	GWGCWC	4 cut(s)	291, 480, 501, 547
Alw44I	GTGCAC	1 cut(s)	476
AlwI	GGATC	1 cut(s)	232
Ama87I	CYCGRG	2 cut(s)	134, 519
AoxI	GGCC	3 cut(s)	130, 151, 561
ApaLI	GTGCAC	1 cut(s)	476
ApeKI	GCWGC	3 cut(s)	236, 386, 394
AsiGI	ACCGGT	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	74
AsuHPI	GGTGA	3 cut(s)	223, 308, 419
AsuII	TTCGAA	1 cut(s)	486
AvaI	CYCGRG	2 cut(s)	134, 519
AxyI	CCTNAGG	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	501
Bbv12I	GWGCWC	4 cut(s)	291, 480, 501, 547
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	3 cut(s)	223, 398, 406
BccI	CCATC	3 cut(s)	143, 152, 259
BceAI	ACGGC	3 cut(s)	145, 431, 576
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	1 cut(s)	405
BfoI	RGCGCY	1 cut(s)	75
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	3 cut(s)	237, 387, 395
BlsI	GCNGC	3 cut(s)	238, 388, 396
Bme1390I	CCNGG	1 cut(s)	405
BmeT110I	CYCGRG	2 cut(s)	134, 519
BmgBI	CACGTC	2 cut(s)	508, 542
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	1 cut(s)	405
BmrI	ACTGGG	1 cut(s)	542
BmuI	ACTGGG	1 cut(s)	542
Bpu10I	CCTNAGC	1 cut(s)	492
Bpu14I	TTCGAA	1 cut(s)	486
Bsa29I	ATCGAT	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	3 cut(s)	154, 179, 447
BsaWI	WCCGGW	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse118I	RCCGGY	1 cut(s)	318
Bse1I	ACTGG	2 cut(s)	458, 537
Bse21I	CCTNAGG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	405
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	3 cut(s)	154, 179, 447
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	2 cut(s)	272, 483
BseNI	ACTGG	2 cut(s)	458, 537
BseRI	GAGGAG	3 cut(s)	152, 467, 509
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	3 cut(s)	223, 398, 406
BseYI	CCCAGC	1 cut(s)	577
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	2 cut(s)	14, 474
BshFI	GGCC	3 cut(s)	132, 153, 563
BshTI	ACCGGT	1 cut(s)	318
BshVI	ATCGAT	1 cut(s)	147
BsiHKAI	GWGCWC	4 cut(s)	291, 480, 501, 547
BsiHKCI	CYCGRG	2 cut(s)	134, 519
BsiSI	CCGG	2 cut(s)	297, 319
BslI	CCNNNNNNNGG	1 cut(s)	404
BsnI	GGCC	3 cut(s)	132, 153, 563
BsoBI	CYCGRG	2 cut(s)	134, 519
Bsp119I	TTCGAA	1 cut(s)	486
Bsp1286I	GDGCHC	4 cut(s)	291, 480, 501, 547
Bsp143I	GATC	4 cut(s)	103, 224, 418, 587
BspACI	CCGC	3 cut(s)	14, 30, 392
BspANI	GGCC	3 cut(s)	132, 153, 563
BspCNI	CTCAG	2 cut(s)	273, 484
BspDI	ATCGAT	1 cut(s)	147
BspFNI	CGCG	2 cut(s)	14, 474
BspLI	GGNNCC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	232
BspQI	GCTCTTC	1 cut(s)	358
BspT104I	TTCGAA	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	458, 537
BssAI	RCCGGY	1 cut(s)	318
BssECI	CCNNGG	3 cut(s)	154, 179, 447
BssMI	GATC	4 cut(s)	103, 224, 418, 587
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	2 cut(s)	154, 179
Bst2UI	CCWGG	1 cut(s)	405
Bst6I	CTCTTC	1 cut(s)	358
BstACI	GRCGYC	1 cut(s)	63
BstBI	TTCGAA	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	444, 476
BstDEI	CTNAG	4 cut(s)	192, 207, 281, 492
BstDSI	CCRYGG	1 cut(s)	447
BstEII	GGTNACC	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	331
BstFNI	CGCG	2 cut(s)	14, 474
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	4 cut(s)	106, 227, 421, 590
BstMBI	GATC	4 cut(s)	103, 224, 418, 587
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNI	CCWGG	1 cut(s)	405
BstPI	GGTNACC	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	403
BstSLI	GKGCMC	1 cut(s)	480
BstUI	CGCG	2 cut(s)	14, 474
BstV1I	GCAGC	3 cut(s)	223, 398, 406
BstX2I	RGATCY	2 cut(s)	224, 587
BstYI	RGATCY	2 cut(s)	224, 587
Bsu15I	ATCGAT	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	132, 153, 563
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	447
BtgZI	GCGATG	1 cut(s)	448
BtrI	CACGTC	2 cut(s)	508, 542
BtsCI	GGATG	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	444, 476
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	318
ClaI	ATCGAT	1 cut(s)	147
CseI	GACGC	1 cut(s)	24
CspAI	ACCGGT	1 cut(s)	318
CviAII	CATG	1 cut(s)	293
DdeI	CTNAG	4 cut(s)	192, 207, 281, 492
DpnI	GATC	4 cut(s)	105, 226, 420, 589
DpnII	GATC	4 cut(s)	103, 224, 418, 587
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Ecl136II	GAGCTC	1 cut(s)	499
Eco130I	CCWWGG	2 cut(s)	154, 179
Eco24I	GRGCYC	1 cut(s)	501
Eco53kI	GAGCTC	1 cut(s)	499
Eco81I	CCTNAGG	1 cut(s)	192
Eco88I	CYCGRG	2 cut(s)	134, 519
Eco91I	GGTNACC	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	499
EcoO65I	GGTNACC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	2 cut(s)	154, 179
EcoT38I	GRGCYC	1 cut(s)	501
ErhI	CCWWGG	2 cut(s)	154, 179
FaeI	CATG	1 cut(s)	296
FaiI	YATR	3 cut(s)	96, 294, 311
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FatI	CATG	1 cut(s)	292
FauI	CCCGC	1 cut(s)	399
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	3 cut(s)	237, 387, 395
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	3 cut(s)	237, 387, 395
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	3 cut(s)	237, 387, 395
GsaI	CCCAGC	1 cut(s)	581
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	132, 153, 563
HapII	CCGG	2 cut(s)	297, 319
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	4 cut(s)	9, 140, 167, 184
HpaII	CCGG	2 cut(s)	297, 319
HphI	GGTGA	3 cut(s)	223, 308, 419
Hpy166II	GTNNAC	5 cut(s)	58, 478, 505, 511, 539
Hpy188I	TCNGA	3 cut(s)	103, 172, 282
Hpy188III	TCNNGA	3 cut(s)	107, 521, 591
Hpy8I	GTNNAC	5 cut(s)	58, 478, 505, 511, 539
Hpy99I	CGWCG	4 cut(s)	40, 65, 68, 131
HpyAV	CCTTC	3 cut(s)	238, 328, 352
HpyCH4IV	ACGT	3 cut(s)	63, 507, 541
HpyCH4V	TGCA	4 cut(s)	4, 49, 239, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	4 cut(s)	192, 207, 281, 492
HpySE526I	ACGT	3 cut(s)	63, 507, 541
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	296
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	4 cut(s)	103, 224, 418, 587
LguI	GCTCTTC	1 cut(s)	358
LmnI	GCTCC	5 cut(s)	19, 286, 454, 496, 581
Lsp1109I	GCAGC	3 cut(s)	223, 398, 406
MaeII	ACGT	3 cut(s)	63, 507, 541
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	4 cut(s)	105, 226, 420, 589
MboI	GATC	4 cut(s)	103, 224, 418, 587
MboII	GAAGA	3 cut(s)	122, 375, 413
MflI	RGATCY	2 cut(s)	224, 587
MhlI	GDGCHC	4 cut(s)	291, 480, 501, 547
MlyI	GAGTC	3 cut(s)	3, 149, 161
MnlI	CCTC	8 cut(s)	109, 130, 143, 241, 276, 445, 487, 508
MroXI	GAANNNNTTC	1 cut(s)	468
MspI	CCGG	2 cut(s)	297, 319
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	2 cut(s)	14, 474
MwoI	GCNNNNNNNGC	1 cut(s)	439
NdeII	GATC	4 cut(s)	103, 224, 418, 587
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	1 cut(s)	407
NspV	TTCGAA	1 cut(s)	486
PaeR7I	CTCGAG	2 cut(s)	134, 519
PciSI	GCTCTTC	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 430
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	184
PinAI	ACCGGT	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	238, 388, 396
PleI	GAGTC	3 cut(s)	3, 148, 161
PpsI	GAGTC	3 cut(s)	3, 148, 161
Psp124BI	GAGCTC	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	403
PspEI	GGTNACC	1 cut(s)	407
PspFI	CCCAGC	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	456
PspXI	VCTCGAGB	1 cut(s)	134
PsrI	GAACNNNNNNTAC	2 cut(s)	453, 485
PsuI	RGATCY	2 cut(s)	224, 587
SacI	GAGCTC	1 cut(s)	501
SapI	GCTCTTC	1 cut(s)	358
SatI	GCNGC	3 cut(s)	237, 387, 395
Sau3AI	GATC	4 cut(s)	103, 224, 418, 587
SchI	GAGTC	3 cut(s)	3, 149, 161
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	4 cut(s)	291, 480, 501, 547
Sfr274I	CTCGAG	2 cut(s)	134, 519
SfuI	TTCGAA	1 cut(s)	486
SgrAI	CRCCGGYG	1 cut(s)	318
SlaI	CTCGAG	2 cut(s)	134, 519
SmlI	CTYRAG	2 cut(s)	134, 519
SmoI	CTYRAG	2 cut(s)	134, 519
SsiI	CCGC	3 cut(s)	14, 30, 392
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	2 cut(s)	154, 179
TaiI	ACGT	3 cut(s)	66, 510, 544
TaqI	TCGA	7 cut(s)	38, 126, 135, 147, 417, 486, 520
TfiI	GAWTC	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	3 cut(s)	236, 386, 394
Tsp45I	GTSAC	1 cut(s)	407
VneI	GTGCAC	1 cut(s)	476
XhoI	CTCGAG	2 cut(s)	134, 519
XmiI	GTMKAC	1 cut(s)	504
XmnI	GAANNNNTTC	1 cut(s)	468
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.