Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018536

Physical Location & Seq

Genomic Coordinates Forward (+)

78330620 .. 78331883

Gene Structure 1264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG552600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAACATCTTCTCCAACCCAATGCCAAAGAGACTTCGGGAAAGCAAGAGAGAAATGGCTAATGGTACTAGAGGTTCGTTAGCCTTGACGTTCGTTGTTGGTTTCATAGAGCAGCGAGTACCTCCCGCTCCTTGCAGTGGAAGGATAACAGATTGTTCCCCTGCTAAGGTGATTACTAAAGAATCTCTTTTAGTGGCACAGAAGGAGGATTTGCGTAGAGTGATGGACTTGCTATTTCTGAGGGAGCACCATGCCCGAACTTTACTCATCCATCACCGGTGGGATGTTGAGAAGCTTTTTGCAAAAGATGAAAGGACTGTGGACATTGCTTTTGCAACGGCTCCTGATGTCCATGGCTACTACGCACTCCATTGGGCTGATCTCGCCCACTACATAATTCAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

134

Amino Acids

15.41

Weight (kDa)

9.03

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_ARI1	PF21235	66 - 101	2.1e-08	E3 ubiquitin-protein ligase ARIH1, UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018536)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g06550
rosa_chinensis	RchiOBHm_Chr1g0314591
rosa_laevigata	RLG00000022053 RLG00000032821
rosa_multiflora	Rmu_sc0002370.1_g000019
rosa_samantha	Rh1AG011500 Rh2AG552600 Rh2DG464900
rosa_wichuraiana	Rw0G018450 Rw7G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	128
AciI	CCGC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	67, 120
AfiI	CCNNNNNNNGG	2 cut(s)	137, 166
AgeI	ACCGGT	1 cut(s)	276
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AsiGI	ACCGGT	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	181, 266
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	217, 279
BceAI	ACGGC	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	352
BsaWI	WCCGGW	1 cut(s)	276
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 166
Bse118I	RCCGGY	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	2 cut(s)	267, 289
BseLI	CCNNNNNNNGG	2 cut(s)	137, 166
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	124
BshTI	ACCGGT	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	277
BslI	CCNNNNNNNGG	2 cut(s)	137, 166
BsmAI	GTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	379
Bsp19I	CCATGG	1 cut(s)	352
BspACI	CCGC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	342
BsrBI	CCGCTC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	319
BstDEI	CTNAG	2 cut(s)	165, 239
BstDSI	CCRYGG	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	267, 289
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	124
BtgI	CCRYGG	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	267, 289
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	66, 119
CspAI	ACCGGT	1 cut(s)	276
CviAII	CATG	2 cut(s)	251, 353
CviJI	RGCY	6 cut(s)	59, 83, 295, 341, 357, 377
CviKI_1	RGCY	6 cut(s)	59, 83, 295, 341, 357, 377
CviQI	GTAC	2 cut(s)	66, 119
DdeI	CTNAG	2 cut(s)	165, 239
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	2 cut(s)	254, 356
FaiI	YATR	4 cut(s)	107, 252, 354, 395
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	2 cut(s)	250, 352
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	113
FokI	GGATG	2 cut(s)	254, 296
Fsp4HI	GCNGC	1 cut(s)	113
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	1 cut(s)	113
HapII	CCGG	1 cut(s)	277
Hin1II	CATG	2 cut(s)	254, 356
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	2 cut(s)	181, 266
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	2 cut(s)	38, 344
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	135, 196
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	3 cut(s)	135, 302, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	2 cut(s)	165, 239
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	254, 356
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	3 cut(s)	133, 244, 346
LpnPI	CCDG	3 cut(s)	174, 290, 357
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	89
MalI	GATC	1 cut(s)	381
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	396
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	4 cut(s)	65, 132, 199, 234
MroXI	GAANNNNTTC	1 cut(s)	8
MspI	CCGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	352
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	2 cut(s)	254, 356
NlaIV	GGNNCC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	182
PinAI	ACCGGT	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	342
PsrI	GAACNNNNNNTAC	2 cut(s)	58, 90
RsaI	GTAC	2 cut(s)	67, 120
RsaNI	GTAC	2 cut(s)	66, 119
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	5 cut(s)	76, 92, 124, 171, 297
SgrAI	CRCCGGYG	1 cut(s)	276
Sse9I	AATT	1 cut(s)	396
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	1 cut(s)	92
TasI	AATT	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	182
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	3 cut(s)	17, 94, 324
TspRI	CASTG	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.