Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018536

Physical Location & Seq

Genomic Coordinates Forward (+)

67315357 .. 67327443

Gene Structure 12087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG464900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTAACGGTACTAGAGGTTCGTTAGCCTTAACGTTCGTTGTTGGTTTCATAGAGCAGCGAGTACCTCCCGCTCCTTGCAGTGGAAGGATAACAGGTTGTTCCCCTGCTAAGGTAATTACTAAAGAATCTCTTTTGGTGGCACAAAAGGAGGATTTGCGTAGAGTGATGGACTTGCTATTTCTGAGGGACTTGGTTATATTCCGCCTGATGCCCCAGCCTGATGTCCATGGCTACTACGCACACCATTGGGCTGATCTCGCCCACTACATAATTCAGATTGGGGATGGGGAGATGGCAGATATTTGGTCAAATTCCTGGATCCCTGAGTTACGAAGTGGCAAGCCTAGTAGAAATGGTACGACACTAGCAGCTGTGACTAAGGTCAGGGACCTGGTTGGTGCATCTGGATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

138

Amino Acids

15.2

Weight (kDa)

8.69

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018536)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g06550
rosa_chinensis	RchiOBHm_Chr1g0314591
rosa_laevigata	RLG00000022053 RLG00000032821
rosa_multiflora	Rmu_sc0002370.1_g000019
rosa_samantha	Rh1AG011500 Rh2AG552600 Rh2DG464900
rosa_wichuraiana	Rw0G018450 Rw7G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	74
AciI	CCGC	2 cut(s)	72, 205
AclI	AACGTT	1 cut(s)	35
AclWI	GGATC	2 cut(s)	316, 329
AcsI	RAATTY	1 cut(s)	313
AfaI	GTAC	3 cut(s)	13, 66, 361
AfiI	CCNNNNNNNGG	2 cut(s)	83, 112
AjnI	CCWGG	2 cut(s)	317, 393
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
AlwI	GGATC	2 cut(s)	316, 329
ApeKI	GCWGC	2 cut(s)	58, 371
ApoI	RAATTY	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	391
BamHI	GGATCC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	70, 383
BccI	CCATC	3 cut(s)	163, 281, 289
BciT130I	CCWGG	2 cut(s)	319, 395
BfaI	CTAG	4 cut(s)	15, 348, 368, 415
BisI	GCNGC	2 cut(s)	59, 372
BlsI	GCNGC	2 cut(s)	60, 373
Bme1390I	CCNGG	2 cut(s)	319, 395
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	2 cut(s)	323, 392
BmrFI	CCNGG	2 cut(s)	319, 395
BmsI	GCATC	2 cut(s)	201, 413
BoxI	GACNNNNGTC	1 cut(s)	383
Bpu10I	CCTNAGC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 112
BseBI	CCWGG	2 cut(s)	319, 395
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	83, 112
BseMII	CTCAG	2 cut(s)	176, 318
BseXI	GCAGC	2 cut(s)	70, 383
BseYI	CCCAGC	1 cut(s)	216
BslFI	GGGAC	2 cut(s)	203, 404
BslI	CCNNNNNNNGG	2 cut(s)	83, 112
BsmFI	GGGAC	2 cut(s)	203, 404
Bsp143I	GATC	2 cut(s)	256, 321
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	2 cut(s)	72, 205
BspCNI	CTCAG	2 cut(s)	177, 319
BspLI	GGNNCC	2 cut(s)	323, 392
BspPI	GGATC	2 cut(s)	316, 329
BsrBI	CCGCTC	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	256, 321
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	2 cut(s)	319, 395
Bst4CI	ACNGT	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	4 cut(s)	111, 185, 327, 381
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	2 cut(s)	259, 324
BstMBI	GATC	2 cut(s)	256, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	2 cut(s)	319, 395
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSCI	CCNGG	2 cut(s)	317, 393
BstV1I	GCAGC	2 cut(s)	70, 383
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	391
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	3 cut(s)	12, 65, 360
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	7 cut(s)	5, 29, 220, 234, 254, 346, 374
CviKI_1	RGCY	7 cut(s)	5, 29, 220, 234, 254, 346, 374
CviQI	GTAC	3 cut(s)	12, 65, 360
DdeI	CTNAG	4 cut(s)	111, 185, 327, 381
DpnI	GATC	2 cut(s)	258, 323
DpnII	GATC	2 cut(s)	256, 321
EciI	GGCGGA	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	317, 393
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	1 cut(s)	233
FaiI	YATR	4 cut(s)	53, 200, 231, 272
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FaqI	GGGAC	2 cut(s)	203, 404
FatI	CATG	1 cut(s)	229
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	59, 372
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	2 cut(s)	59, 372
FspBI	CTAG	4 cut(s)	15, 348, 368, 415
GluI	GCNGC	2 cut(s)	59, 372
GsaI	CCCAGC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	233
HinfI	GANTC	2 cut(s)	128, 411
Hpy188I	TCNGA	2 cut(s)	186, 279
Hpy188III	TCNNGA	1 cut(s)	408
HpyAV	CCTTC	1 cut(s)	81
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	81, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	4 cut(s)	111, 185, 327, 381
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	256, 321
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	2 cut(s)	70, 383
LweI	GCATC	2 cut(s)	201, 413
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	4 cut(s)	15, 348, 368, 415
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	330, 376
MalI	GATC	2 cut(s)	258, 323
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	2 cut(s)	256, 321
MflI	RGATCY	1 cut(s)	321
MluCI	AATT	3 cut(s)	117, 273, 313
MnlI	CCTC	4 cut(s)	11, 78, 145, 180
MseI	TTAA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	374
MspR9I	CCNGG	2 cut(s)	319, 395
MvaI	CCWGG	2 cut(s)	319, 395
MwoI	GCNNNNNNNGC	1 cut(s)	260
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	2 cut(s)	256, 321
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	2 cut(s)	323, 392
NmuCI	GTSAC	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	128, 411
PfoI	TCCNGGA	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	60, 373
PpuMI	RGGWCCY	1 cut(s)	391
PshAI	GACNNNNGTC	1 cut(s)	383
Psp1406I	AACGTT	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	317, 393
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	2 cut(s)	317, 393
PspN4I	GGNNCC	2 cut(s)	323, 392
PspPI	GGNCC	1 cut(s)	391
PspPPI	RGGWCCY	1 cut(s)	391
PsrI	GAACNNNNNNTAC	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	3 cut(s)	13, 66, 361
RsaNI	GTAC	3 cut(s)	12, 65, 360
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	2 cut(s)	59, 372
Sau3AI	GATC	2 cut(s)	256, 321
Sau96I	GGNCC	1 cut(s)	391
ScrFI	CCNGG	2 cut(s)	319, 395
SetI	ASST	8 cut(s)	22, 38, 70, 100, 117, 376, 387, 396
SexAI	ACCWGGT	1 cut(s)	393
SfaNI	GCATC	2 cut(s)	201, 413
SinI	GGWCC	1 cut(s)	391
Sse9I	AATT	3 cut(s)	117, 273, 313
SsiI	CCGC	2 cut(s)	72, 205
SspMI	CTAG	4 cut(s)	15, 348, 368, 415
StyD4I	CCNGG	2 cut(s)	317, 393
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	38
TasI	AATT	3 cut(s)	117, 273, 313
TfiI	GAWTC	2 cut(s)	128, 411
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	58, 371
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	1 cut(s)	313
XspI	CTAG	4 cut(s)	15, 348, 368, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.