Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00824

Orthogroup ID

OG0018536

Physical Location & Seq

Genomic Coordinates Reverse (-)

44817 .. 45959

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCTAACGGTACTAGAGGTTCGTTAGCCTTAACTTCCCCTGCTAAGGTGATTACTAAAGAATCTCTTTTGGTGGCACAGAAGGAGGATTTGCGTAGAGTGATGGACTTGCTATTTCTGAGGGACTTGGTTATATTCCGCCTGACGCCCCAGCCTGATGTCCATGGCTACTACGCACTCCATTGGGCTGATCTCGCCCACTACATAATTCAGACTGGAGCTAGGGTTGAGGCTGCTGATTTCAAAGGGTACCGGCTAATAGTCTCATTAATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

92

Amino Acids

10.37

Weight (kDa)

9.15

Isoelectric Point (pI)

24.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018536)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g06550
rosa_chinensis	RchiOBHm_Chr1g0314591
rosa_laevigata	RLG00000022053 RLG00000032821
rosa_multiflora	Rmu_sc0002370.1_g000019
rosa_samantha	Rh1AG011500 Rh2AG552600 Rh2DG464900
rosa_wichuraiana	Rw0G018450 Rw7G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	249
AciI	CCGC	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	2 cut(s)	13, 251
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	244
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	233
AseI	ATTAAT	2 cut(s)	269, 273
Asp718I	GGTACC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	2 cut(s)	15, 222
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse118I	RCCGGY	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	150
BshNI	GGYRCC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	190
Bsp19I	CCATGG	1 cut(s)	163
BspACI	CCGC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	190
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	45, 119
BstDSI	CCRYGG	1 cut(s)	163
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	220
BtgI	CCRYGG	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	252
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	12, 250
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	8 cut(s)	5, 29, 154, 168, 188, 221, 233, 256
CviKI_1	RGCY	8 cut(s)	5, 29, 154, 168, 188, 221, 233, 256
CviQI	GTAC	2 cut(s)	12, 250
DdeI	CTNAG	2 cut(s)	45, 119
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EciI	GGCGGA	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	1 cut(s)	167
FaiI	YATR	3 cut(s)	134, 165, 206
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	15, 222
GluI	GCNGC	1 cut(s)	234
GsaI	CCCAGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	237
HapII	CCGG	1 cut(s)	253
HgaI	GACGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	167
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	120, 213
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	2 cut(s)	45, 119
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	167
KpnI	GGTACC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	6 cut(s)	54, 155, 164, 168, 201, 266
Lsp1109I	GCAGC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	15, 222
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MluCI	AATT	3 cut(s)	207, 270, 274
MnlI	CCTC	4 cut(s)	11, 79, 114, 223
MseI	TTAA	4 cut(s)	32, 269, 273, 277
MspI	CCGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	194
NcoI	CCATGG	1 cut(s)	163
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	251
PacI	TTAATTAA	2 cut(s)	273, 277
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	235
PshBI	ATTAAT	2 cut(s)	269, 273
PspFI	CCCAGC	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	251
PsrI	GAACNNNNNNTAC	1 cut(s)	36
RsaI	GTAC	2 cut(s)	13, 251
RsaNI	GTAC	2 cut(s)	12, 250
SaqAI	TTAA	4 cut(s)	32, 269, 273, 277
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	190
SetI	ASST	3 cut(s)	22, 51, 223
Sse9I	AATT	3 cut(s)	207, 270, 274
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	2 cut(s)	15, 222
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	11
TasI	AATT	3 cut(s)	207, 270, 274
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	4 cut(s)	32, 269, 273, 277
Tru9I	TTAA	4 cut(s)	32, 269, 273, 277
TseI	GCWGC	1 cut(s)	233
VspI	ATTAAT	2 cut(s)	269, 273
XspI	CTAG	2 cut(s)	15, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.