Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004107

Physical Location & Seq

Genomic Coordinates Reverse (-)

8102944 .. 8105623

Gene Structure 2680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAAAATGATGACCCCTTATTTTCACAAGCTGATAGTGTCCTCTACTCTCCAAGCCAAGCAGCTGAGGATCCCGGAAAGTTTTGTCCAGAAATTCAGAAATGAGCTATCTACCACTGCTAAGCTCACTGTTCCTGATGGTCGTGTTTGGCATGTGGGAGTAAAGAAGGTTGATAACAAGTTTTGGTTTCACGGTGTTTGGCAGGAGTTCATTGAACATTATTCAATCCGTGTTGGATACTTTTTAACATTCAGATATGAAGGGTGTTCGTCTTTCACTGTCCATATATTTAATTTGAAAACTGCTGAGATTAACTATCAACCTACTGCTCTCAGTAGTACTGGAGGTTCTGTTTACCGGTATCAAGTTTTTGAAGAAATGGAAGATGATGACTCGGTTGAAATCTTGGGTTCCTCCCCTACATCCATTGTTACTGATTCTTTGAGAGACAAGCGCTTTGGTGACTCTGCAAATCAACTGATGCCTGGGAAAAATTGTACTCCATCGCTGCAGAATTTGTTTAATGGTTCCAAACCTAAGAATTGCATGAGCAGGAGTGATGCTGGGAACCTGCATCTGTCGAAGGGTGATGATCGACAAGCAGGTGAAGATACACGAAGCATAAAGAAGACTATGAGAAAAAAGCGGAAGGTTAATCCTGATGTGCAGGAGTCTTCTTCTAAACAAGAAAAAGAAGTGGAAATCCGCTTTCGGTTTTATGAAAGTGCATCTGCAAGGAAGAGAACCGTGACAGCTGAAGAAAGAGAAAGGGCTATCAATGCAGCCAAAACATTTGAGCCAGATAATCCTTTCTGCAGGGTCGTCCTTCGACCATCCTACCTATATAGAGGTTGTATAATGTATTTGCCATCCTGCTTTGCCGAAAAGAATTTAAATGGGGTTTCAGGATTCATCAAACTTCAGTCCGCTGATGGTAGACAATGGTCAGTCCGATGCCTTTATAGAGGAGGTAGAGCAAAATTAAGCCAGGGATGGTATGAGTTTACGATGGATAACAATCTGGGAGAGGGAGATGTTTGTGTCTTTGAATTTCTCAAGATGAAGGACATTGTGCTGAAAGTTACTGTATTTCGCGTTCTTGAAGATGCAGGATTTGTGAACCAGCCTCAAAAGCGACATCTCACCCCCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0016020 GO:0031974 GO:0031981 GO:0033036 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051239 GO:0051641 GO:0065007 GO:0070013 GO:0070727 GO:0071944 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

385

Amino Acids

44.07

Weight (kDa)

9.33

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	9 - 98	4.2e-15	B3 DNA binding domain
B3	PF02362	274 - 365	1.9e-18	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49480 AT1G49480 AT1G49480 AT3G18990 AT3G18990
fragaria_vesca	FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320
malus_domestica	MD05G1072500.v1.1 MD10G1086900.v1.1
prunus_persica	Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1
pyrus_communis	pycom05g06470 pycom10g06930
rosa_chinensis	RchiOBHm_Chr6g0259941
rosa_laevigata	RLG00000014498
rosa_multiflora	Rmu_sc0000414.1_g000006
rosa_roxburghii	Rroxscaffold_7G00207280
rosa_rugosa	Rorug05G0591500
rosa_samantha	Rh6AG108500 Rh6BG103900 Rh6CG097200 Rh6DG090900
rosa_wichuraiana	Rw6G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	593
Acc36I	ACCTGC	2 cut(s)	579, 593
AccI	GTMKAC	1 cut(s)	937
AccII	CGCG	1 cut(s)	1095
AciI	CCGC	3 cut(s)	646, 706, 927
AclWI	GGATC	2 cut(s)	64, 77
AcsI	RAATTY	4 cut(s)	92, 514, 889, 1049
AcuI	CTGAAG	2 cut(s)	777, 905
AfaI	GTAC	2 cut(s)	340, 499
AfeI	AGCGCT	1 cut(s)	455
AgeI	ACCGGT	1 cut(s)	357
AgsI	TTSAA	7 cut(s)	215, 225, 298, 374, 401, 1049, 1103
AjnI	CCWGG	2 cut(s)	484, 987
AluBI	AGCT	6 cut(s)	31, 64, 106, 124, 755, 1152
AluI	AGCT	6 cut(s)	31, 64, 106, 124, 755, 1152
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	64, 77
Aor51HI	AGCGCT	1 cut(s)	455
ApeKI	GCWGC	3 cut(s)	61, 508, 782
ApoI	RAATTY	4 cut(s)	92, 514, 889, 1049
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AsiGI	ACCGGT	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	456
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	4 cut(s)	473, 599, 617, 1135
BamHI	GGATCC	1 cut(s)	69
BbsI	GAAGAC	2 cut(s)	635, 666
BbvCI	CCTCAGC	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	73, 495, 794
BccI	CCATC	7 cut(s)	131, 511, 841, 877, 926, 987, 1003
BciT130I	CCWGG	2 cut(s)	486, 989
BciVI	GTATCC	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	441
BfmI	CTRYAG	2 cut(s)	509, 814
BfoI	RGCGCY	1 cut(s)	457
BfuAI	ACCTGC	2 cut(s)	579, 593
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	3 cut(s)	62, 509, 783
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	3 cut(s)	63, 510, 784
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	3 cut(s)	74, 486, 989
BmiI	GGNNCC	4 cut(s)	71, 412, 529, 569
BmrFI	CCNGG	3 cut(s)	74, 486, 989
BmsI	GCATC	6 cut(s)	471, 550, 583, 737, 944, 1096
BoxI	GACNNNNGTC	1 cut(s)	943
BpiI	GAAGAC	2 cut(s)	635, 666
BpmI	CTGGAG	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	65
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	1040
BpuMI	CCSGG	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	1017
BsaJI	CCNNGG	2 cut(s)	485, 988
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	346
Bse8I	GATNNNNATC	1 cut(s)	1017
BseBI	CCWGG	2 cut(s)	486, 989
BseDI	CCNNGG	2 cut(s)	485, 988
BseGI	GGATG	4 cut(s)	422, 833, 869, 998
BseJI	GATNNNNATC	1 cut(s)	1017
BseMII	CTCAG	3 cut(s)	56, 297, 346
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	981
BseXI	GCAGC	3 cut(s)	73, 495, 794
BseYI	CCCAGC	2 cut(s)	563, 1148
BsgI	GTGCAG	1 cut(s)	686
Bsh1236I	CGCG	1 cut(s)	1095
BshTI	ACCGGT	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	74, 358
BsmAI	GTCTC	1 cut(s)	441
Bsp143I	GATC	2 cut(s)	69, 592
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	3 cut(s)	646, 706, 927
BspCNI	CTCAG	3 cut(s)	57, 298, 345
BspFNI	CGCG	1 cut(s)	1095
BspLI	GGNNCC	4 cut(s)	71, 412, 529, 569
BspMAI	CTGCAG	2 cut(s)	513, 818
BspMI	ACCTGC	2 cut(s)	579, 593
BspPI	GGATC	2 cut(s)	64, 77
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	346
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	485, 988
BssMI	GATC	2 cut(s)	69, 592
Bst2UI	CCWGG	2 cut(s)	486, 989
Bst4CI	ACNGT	5 cut(s)	130, 194, 280, 748, 1087
Bst6I	CTCTTC	1 cut(s)	734
BstDEI	CTNAG	5 cut(s)	65, 120, 306, 332, 537
BstF5I	GGATG	4 cut(s)	422, 833, 869, 998
BstFNI	CGCG	1 cut(s)	1095
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	2 cut(s)	72, 595
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	2 cut(s)	69, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	779, 1132
BstNI	CCWGG	2 cut(s)	486, 989
BstNSI	RCATGY	1 cut(s)	155
BstPAI	GACNNNNGTC	1 cut(s)	943
BstSCI	CCNGG	3 cut(s)	72, 484, 987
BstSFI	CTRYAG	2 cut(s)	509, 814
BstUI	CGCG	1 cut(s)	1095
BstV1I	GCAGC	3 cut(s)	73, 495, 794
BstV2I	GAAGAC	2 cut(s)	635, 666
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	230
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	4 cut(s)	422, 833, 869, 998
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	3 cut(s)	114, 126, 276
BveI	ACCTGC	2 cut(s)	579, 593
CfoI	GCGC	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	339, 498
CspAI	ACCGGT	1 cut(s)	357
CviAII	CATG	2 cut(s)	152, 547
CviQI	GTAC	2 cut(s)	339, 498
DdeI	CTNAG	5 cut(s)	65, 120, 306, 332, 537
DpnI	GATC	2 cut(s)	71, 594
DpnII	GATC	2 cut(s)	69, 592
DraI	TTTAAA	1 cut(s)	894
Eam1104I	CTCTTC	1 cut(s)	734
EarI	CTCTTC	1 cut(s)	734
Eco47III	AGCGCT	1 cut(s)	455
Eco57I	CTGAAG	2 cut(s)	777, 905
EcoRII	CCWGG	2 cut(s)	484, 987
FaeI	CATG	2 cut(s)	155, 550
FatI	CATG	2 cut(s)	151, 546
FblI	GTMKAC	1 cut(s)	937
Fnu4HI	GCNGC	3 cut(s)	62, 509, 783
FokI	GGATG	4 cut(s)	409, 820, 856, 1005
Fsp4HI	GCNGC	3 cut(s)	62, 509, 783
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	3 cut(s)	62, 509, 783
GsaI	CCCAGC	2 cut(s)	567, 1152
GsuI	CTGGAG	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	457
HapII	CCGG	2 cut(s)	74, 358
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	2 cut(s)	155, 550
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HinfI	GANTC	5 cut(s)	392, 437, 464, 671, 909
HpaII	CCGG	2 cut(s)	74, 358
HphI	GGTGA	4 cut(s)	473, 599, 617, 1135
Hpy166II	GTNNAC	4 cut(s)	355, 938, 1005, 1120
Hpy188I	TCNGA	3 cut(s)	98, 254, 953
Hpy188III	TCNNGA	6 cut(s)	88, 134, 659, 906, 1057, 1100
Hpy8I	GTNNAC	4 cut(s)	355, 938, 1005, 1120
HpyAV	CCTTC	6 cut(s)	160, 254, 577, 643, 836, 1057
HpyCH4III	ACNGT	5 cut(s)	130, 194, 280, 748, 1087
HpyF10VI	GCNNNNNNNGC	2 cut(s)	779, 1132
HpyF3I	CTNAG	5 cut(s)	65, 120, 306, 332, 537
Hsp92II	CATG	2 cut(s)	155, 550
HspAI	GCGC	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	69, 592
Lsp1109I	GCAGC	3 cut(s)	73, 495, 794
LweI	GCATC	6 cut(s)	471, 550, 583, 737, 944, 1096
MaeIII	GTNAC	4 cut(s)	430, 461, 748, 1081
MalI	GATC	2 cut(s)	71, 594
MboI	GATC	2 cut(s)	69, 592
MboII	GAAGA	9 cut(s)	386, 395, 620, 640, 666, 669, 751, 770, 1115
MflI	RGATCY	1 cut(s)	69
MluCI	AATT	8 cut(s)	92, 292, 493, 514, 541, 889, 980, 1049
MlyI	GAGTC	3 cut(s)	386, 458, 680
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	9 cut(s)	52, 60, 338, 424, 842, 959, 962, 1021, 1137
MseI	TTAA	7 cut(s)	245, 291, 312, 522, 654, 893, 983
MspA1I	CMGCKG	3 cut(s)	64, 755, 929
MspI	CCGG	2 cut(s)	74, 358
MspR9I	CCNGG	3 cut(s)	74, 486, 989
MvaI	CCWGG	2 cut(s)	486, 989
MvnI	CGCG	1 cut(s)	1095
MwoI	GCNNNNNNNGC	2 cut(s)	779, 1132
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	2 cut(s)	69, 592
NlaIII	CATG	2 cut(s)	155, 550
NlaIV	GGNNCC	4 cut(s)	71, 412, 529, 569
NmuCI	GTSAC	2 cut(s)	461, 748
NspI	RCATGY	1 cut(s)	155
PaqCI	CACCTGC	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	437, 909
PfoI	TCCNGGA	1 cut(s)	72
PinAI	ACCGGT	1 cut(s)	357
PkrI	GCNGC	3 cut(s)	63, 510, 784
PleI	GAGTC	3 cut(s)	386, 458, 679
PpsI	GAGTC	3 cut(s)	386, 458, 679
PshAI	GACNNNNGTC	1 cut(s)	943
Psp6I	CCWGG	2 cut(s)	484, 987
PspFI	CCCAGC	2 cut(s)	563, 1148
PspGI	CCWGG	2 cut(s)	484, 987
PspN4I	GGNNCC	4 cut(s)	71, 412, 529, 569
PsrI	GAACNNNNNNTAC	4 cut(s)	331, 363, 1080, 1112
PstI	CTGCAG	2 cut(s)	513, 818
PsuI	RGATCY	1 cut(s)	69
PvuII	CAGCTG	2 cut(s)	64, 755
RsaI	GTAC	2 cut(s)	340, 499
RsaNI	GTAC	2 cut(s)	339, 498
SaqAI	TTAA	7 cut(s)	245, 291, 312, 522, 654, 893, 983
SatI	GCNGC	3 cut(s)	62, 509, 783
Sau3AI	GATC	2 cut(s)	69, 592
ScaI	AGTACT	1 cut(s)	340
SchI	GAGTC	3 cut(s)	386, 458, 680
ScrFI	CCNGG	3 cut(s)	74, 486, 989
SfaNI	GCATC	6 cut(s)	471, 550, 583, 737, 944, 1096
SfcI	CTRYAG	2 cut(s)	509, 814
SmiI	ATTTAAAT	1 cut(s)	894
SmlI	CTYRAG	1 cut(s)	1055
SmoI	CTYRAG	1 cut(s)	1055
Sse9I	AATT	8 cut(s)	92, 292, 493, 514, 541, 889, 980, 1049
SsiI	CCGC	3 cut(s)	646, 706, 927
StyD4I	CCNGG	3 cut(s)	72, 484, 987
SwaI	ATTTAAAT	1 cut(s)	894
TaaI	ACNGT	5 cut(s)	130, 194, 280, 748, 1087
TaqI	TCGA	3 cut(s)	581, 595, 829
TasI	AATT	8 cut(s)	92, 292, 493, 514, 541, 889, 980, 1049
TatI	WGTACW	2 cut(s)	338, 497
TfiI	GAWTC	2 cut(s)	437, 909
Tru1I	TTAA	7 cut(s)	245, 291, 312, 522, 654, 893, 983
Tru9I	TTAA	7 cut(s)	245, 291, 312, 522, 654, 893, 983
TscAI	CASTG	3 cut(s)	121, 133, 283
TseFI	GTSAC	2 cut(s)	461, 748
TseI	GCWGC	3 cut(s)	61, 508, 782
Tsp45I	GTSAC	2 cut(s)	461, 748
TspDTI	ATGAA	6 cut(s)	17, 199, 273, 735, 901, 1076
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	3 cut(s)	121, 133, 283
XapI	RAATTY	4 cut(s)	92, 514, 889, 1049
XceI	RCATGY	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	937
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.