Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010380

Physical Location & Seq

Genomic Coordinates Reverse (-)

9655337 .. 9664251

Gene Structure 8915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGATTCGTTCTGGAGCCACAATGTGGCACCGGACTCATGGGATTTCCTCATCGCTGTCTACTTCGCTTTCGGATTTTTCGTTGCTCGCCTCTTCTTTGACAGATTTATCTTTCGCAAAATTTCTGTCTGGTTGTTGAGGAAGGGATCTGCTTCATTGAAGCTTGATATGGCCACACGGGCAAAGATTGTAAAATGTTCGGAGTCAATGTGGAAGCTAACATACTATGCCACTGTTGAAGCATGCATTCTCAGCATAGGCTACCATGAGCCTTGGTTCAGAGATACAAAAGAGTACTTTAAAGGCTGGCCAAACCAAGAGCTGGGGCTTCCCCTAAAGCTTTTCTATATGTGTCAGTTGGGATTCTACAGCTACAGCATTGCTGCCCTCCTTACATGGGAGACTCGAAGGAAGGATTTCTCAGTGATGATGTCTCACCATGTAATTACTGTTCTTCTAATTGGGATCTCATACATAACAAGCTTTTTTCGGATTGGCTCAATCATTCTTGCCCTGCACGACGGAAGTGACGTATTTATGGAAACTGCCAAGGTTTTCAAGTATTCTGAGAAGGAGCTCGCGGCAAGTGTGTTCTTTGGGTTTTTTGCTGTTTCGTGGGTCATACTGCGGTTAATATTCTTCCCCTTCTGGGTCATAAGCGCATCAAGCTATAATCTTTGTGACTGCTTGGATCTATCGAAGCCCTCCCCCAAAGCTCTGTATTATGCATTCAATACAATGTTACTGACGCTTTTTGTGTTCCACATATACTGGTGGGTTATGATTTGCTCAATGATAAGGAGACAGCTGAACAATAGAGGAAAAGTTGGAGAAGATATTAGATCAGATTCAGAGGACGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0002238 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042221 GO:0042759 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

289

Amino Acids

33.76

Weight (kDa)

8.43

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	65 - 263	1.3e-48	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19260
fragaria_vesca	FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020
malus_domestica	MD00G1035400.v1.1 MD05G1081300.v1.1
prunus_persica	Prupe.8G125600_v2.0.a1
pyrus_communis	pycom05g07470 pycom10g07860
rosa_chinensis	RchiOBHm_Chr6g0257331
rosa_laevigata	RLG00000014688
rosa_multiflora	Rmu_sc0000820.1_g000006
rosa_roxburghii	Rroxscaffold_7G00208620
rosa_rugosa	Rorug05G0573500 Rorug05G0573600
rosa_samantha	Rh6AG090800 Rh6CG078600 Rh6DG074400
rosa_wichuraiana	Rw6G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AccB7I	CCANNNNNTGG	2 cut(s)	25, 322
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	581
AciI	CCGC	2 cut(s)	581, 628
AclWI	GGATC	3 cut(s)	154, 473, 699
AcoI	YGGCCR	2 cut(s)	171, 308
AcsI	RAATTY	1 cut(s)	120
AdeI	CACNNNGTG	1 cut(s)	25
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	4 cut(s)	25, 322, 397, 649
AgsI	TTSAA	4 cut(s)	160, 239, 559, 733
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	3 cut(s)	395, 438, 796
AlwI	GGATC	3 cut(s)	154, 473, 699
AoxI	GGCC	2 cut(s)	171, 308
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	662
AsuHPI	GGTGA	1 cut(s)	428
BalI	TGGCCA	2 cut(s)	173, 310
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	579
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	370
BcoDI	GTCTC	3 cut(s)	395, 438, 796
BfmI	CTRYAG	2 cut(s)	367, 373
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	2 cut(s)	384, 582
BlsI	GCNGC	2 cut(s)	385, 583
BmcAI	AGTACT	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	17, 30
BmsI	GCATC	1 cut(s)	671
BpmI	CTGGAG	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	272, 549
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 322, 397, 649
Bse1I	ACTGG	1 cut(s)	776
Bse3DI	GCAATG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	272, 549
BseLI	CCNNNNNNNGG	4 cut(s)	25, 322, 397, 649
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	3 cut(s)	265, 435, 558
BseNI	ACTGG	1 cut(s)	776
BseXI	GCAGC	1 cut(s)	370
BseYI	CCCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	500
Bsh1236I	CGCG	1 cut(s)	581
BshFI	GGCC	2 cut(s)	173, 310
BshNI	GGYRCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	4 cut(s)	25, 322, 397, 649
BsmAI	GTCTC	3 cut(s)	395, 438, 796
BsmI	GAATGC	2 cut(s)	246, 728
BsnI	GGCC	2 cut(s)	173, 310
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	146, 465, 691, 842
BspACI	CCGC	2 cut(s)	581, 628
BspANI	GGCC	2 cut(s)	173, 310
BspCNI	CTCAG	3 cut(s)	264, 434, 559
BspFNI	CGCG	1 cut(s)	581
BspLI	GGNNCC	2 cut(s)	17, 30
BspPI	GGATC	3 cut(s)	154, 473, 699
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	776
BssECI	CCNNGG	2 cut(s)	272, 549
BssMI	GATC	4 cut(s)	146, 465, 691, 842
BssT1I	CCWWGG	2 cut(s)	272, 549
Bst4CI	ACNGT	2 cut(s)	235, 451
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	4 cut(s)	88, 244, 308, 579
BstDEI	CTNAG	3 cut(s)	251, 421, 567
BstFNI	CGCG	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	4 cut(s)	149, 468, 694, 845
BstMAI	GTCTC	3 cut(s)	395, 438, 796
BstMBI	GATC	4 cut(s)	146, 465, 691, 842
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 252, 666
BstNSI	RCATGY	1 cut(s)	246
BstSFI	CTRYAG	2 cut(s)	367, 373
BstUI	CGCG	1 cut(s)	581
BstV1I	GCAGC	1 cut(s)	370
BstX2I	RGATCY	3 cut(s)	146, 465, 691
BstYI	RGATCY	3 cut(s)	146, 465, 691
BsuRI	GGCC	2 cut(s)	173, 310
BtgZI	GCGATG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	231, 429
Cac8I	GCNNGC	4 cut(s)	88, 244, 308, 579
CfoI	GCGC	1 cut(s)	662
CseI	GACGC	1 cut(s)	757
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	5 cut(s)	39, 243, 266, 396, 440
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	3 cut(s)	251, 421, 567
DpnI	GATC	4 cut(s)	148, 467, 693, 844
DpnII	GATC	4 cut(s)	146, 465, 691, 842
DraI	TTTAAA	1 cut(s)	301
DraIII	CACNNNGTG	1 cut(s)	25
EaeI	YGGCCR	2 cut(s)	171, 308
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	2 cut(s)	272, 549
Eco24I	GRGCYC	1 cut(s)	579
Eco53kI	GAGCTC	1 cut(s)	577
EcoICRI	GAGCTC	1 cut(s)	577
EcoT14I	CCWWGG	2 cut(s)	272, 549
EcoT22I	ATGCAT	2 cut(s)	248, 730
EcoT38I	GRGCYC	1 cut(s)	579
ErhI	CCWWGG	2 cut(s)	272, 549
FaeI	CATG	5 cut(s)	42, 246, 269, 399, 443
FatI	CATG	5 cut(s)	38, 242, 265, 395, 439
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	384, 582
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	2 cut(s)	384, 582
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	2 cut(s)	384, 582
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	2 cut(s)	173, 310
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	1 cut(s)	757
HhaI	GCGC	1 cut(s)	662
Hin1II	CATG	5 cut(s)	42, 246, 269, 399, 443
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HindIII	AAGCTT	3 cut(s)	161, 338, 481
HinfI	GANTC	6 cut(s)	5, 35, 203, 363, 403, 848
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	7 cut(s)	74, 202, 281, 492, 568, 847, 853
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	5 cut(s)	136, 402, 406, 565, 655
HpyCH4III	ACNGT	2 cut(s)	235, 451
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	3 cut(s)	246, 517, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 252, 666
HpyF3I	CTNAG	3 cut(s)	251, 421, 567
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	5 cut(s)	42, 246, 269, 399, 443
HspAI	GCGC	1 cut(s)	660
Kzo9I	GATC	4 cut(s)	146, 465, 691, 842
LmnI	GCTCC	2 cut(s)	15, 574
LpnPI	CCDG	7 cut(s)	45, 115, 292, 308, 527, 634, 757
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	1 cut(s)	671
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	3 cut(s)	527, 680, 741
MalI	GATC	4 cut(s)	148, 467, 693, 844
MboI	GATC	4 cut(s)	146, 465, 691, 842
MboII	GAAGA	4 cut(s)	85, 446, 631, 845
MflI	RGATCY	3 cut(s)	146, 465, 691
MhlI	GDGCHC	1 cut(s)	579
MlsI	TGGCCA	2 cut(s)	173, 310
MluCI	AATT	3 cut(s)	120, 444, 459
MluNI	TGGCCA	2 cut(s)	173, 310
MlyI	GAGTC	3 cut(s)	29, 212, 397
MmeI	TCCRAC	1 cut(s)	808
MnlI	CCTC	7 cut(s)	59, 101, 132, 398, 715, 812, 847
Mox20I	TGGCCA	2 cut(s)	173, 310
Mph1103I	ATGCAT	2 cut(s)	248, 730
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	2 cut(s)	173, 310
MseI	TTAA	2 cut(s)	300, 632
Msp20I	TGGCCA	2 cut(s)	173, 310
MspA1I	CMGCKG	1 cut(s)	808
MspI	CCGG	1 cut(s)	32
Mva1269I	GAATGC	2 cut(s)	246, 728
MvnI	CGCG	1 cut(s)	581
MwoI	GCNNNNNNNGC	3 cut(s)	179, 252, 666
NdeII	GATC	4 cut(s)	146, 465, 691, 842
NlaIII	CATG	5 cut(s)	42, 246, 269, 399, 443
NlaIV	GGNNCC	2 cut(s)	17, 30
NmuCI	GTSAC	2 cut(s)	527, 680
NsiI	ATGCAT	2 cut(s)	248, 730
NspI	RCATGY	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 528
PctI	GAATGC	2 cut(s)	246, 728
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	5, 363, 848
PflMI	CCANNNNNTGG	2 cut(s)	25, 322
PkrI	GCNGC	2 cut(s)	385, 583
PleI	GAGTC	3 cut(s)	29, 211, 397
PpsI	GAGTC	3 cut(s)	29, 211, 397
Psp124BI	GAGCTC	1 cut(s)	579
PspFI	CCCAGC	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	17, 30
PsrI	GAACNNNNNNTAC	2 cut(s)	435, 467
PsuI	RGATCY	3 cut(s)	146, 465, 691
PvuII	CAGCTG	1 cut(s)	808
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	300, 632
SatI	GCNGC	2 cut(s)	384, 582
Sau3AI	GATC	4 cut(s)	146, 465, 691, 842
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	3 cut(s)	29, 212, 397
SduI	GDGCHC	1 cut(s)	579
SfaNI	GCATC	1 cut(s)	671
SfcI	CTRYAG	2 cut(s)	367, 373
SphI	GCATGC	1 cut(s)	246
Sse9I	AATT	3 cut(s)	120, 444, 459
SsiI	CCGC	2 cut(s)	581, 628
SspI	AATATT	1 cut(s)	636
SstI	GAGCTC	1 cut(s)	579
StyI	CCWWGG	2 cut(s)	272, 549
TaaI	ACNGT	2 cut(s)	235, 451
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	2 cut(s)	406, 698
TasI	AATT	3 cut(s)	120, 444, 459
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	3 cut(s)	5, 363, 848
Tru1I	TTAA	2 cut(s)	300, 632
Tru9I	TTAA	2 cut(s)	300, 632
TscAI	CASTG	2 cut(s)	238, 429
TseFI	GTSAC	2 cut(s)	527, 680
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	2 cut(s)	527, 680
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	2 cut(s)	238, 429
Van91I	CCANNNNNTGG	2 cut(s)	25, 322
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	296
Zsp2I	ATGCAT	2 cut(s)	248, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.