pycom10g09080

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0015531
Physical Location & Seq
Forward (+)
11999131 .. 11999570
440 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
ATGCAAGCAGCAGCAAATCCTAGAAACCTTCTGTTTGCCCTCTTGCTCGCCATGCTCATTTCTTCTCACTTGGTTCACTCTGGGCACTTCGCCAGCTCTCCACCACTGTCTCCATCACCTTCGCCAGCTGTAGGAAATCCAACGGCGAATGATCATGAACCATCTAAGGGGAAAGGGACTGTTAAAAGGTTAAGGAGAGGGTCATTTCCGGCTACTTGTCGTTCAAAATGTAACGAGTGCGAGCCTTGCATGCCAGTTCTAGTATCTGTCCGAGCAATGGCATTGGAAGAGAATGAGTACTATCCACAGGTTTGGAAATGTGCCTGCGGTGAAAGCATATTTTCCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

117

Amino Acids

12.49

Weight (kDa)

8.62

Isoelectric Point (pI)

76.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 66 - 116 2.4e-19 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015531)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04310
malus_domestica MD10G1105400.v1.1
prunus_persica Prupe.8G144300_v2.0.a1
pyrus_communis pycom10g09080
rosa_chinensis RchiOBHm_Chr6g0253751
rosa_laevigata RLG00000014985
rosa_roxburghii Rroxscaffold_7G00211660 Rroxscaffold_7G00211670
rosa_rugosa Rorug05G0546100 Rorug05G0546100
rosa_samantha Rh6AG061800 Rh6BG055300 Rh6CG055300 Rh6DG052900
rosa_wichuraiana Rw6G005480 Rw6G005500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 327
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 3 cut(s) 131, 167, 277
AgsI TTSAA 1 cut(s) 225
AluBI AGCT 2 cut(s) 96, 128
AluI AGCT 2 cut(s) 96, 128
Alw26I GTCTC 1 cut(s) 114
ApeKI GCWGC 2 cut(s) 8, 11
AsuHPI GGTGA 2 cut(s) 108, 341
BaeGI GKGCMC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 20, 23
BccI CCATC 2 cut(s) 121, 169
BceAI ACGGC 1 cut(s) 159
BclI TGATCA 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 2 cut(s) 21, 260
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 9, 12
BlsI GCNGC 2 cut(s) 10, 13
BmcAI AGTACT 1 cut(s) 299
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 167, 277
Bse1I ACTGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 282
BseLI CCNNNNNNNGG 3 cut(s) 131, 167, 277
BseMI GCAATG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 87
BseXI GCAGC 2 cut(s) 20, 23
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 3 cut(s) 131, 167, 277
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 1 cut(s) 327
BspHI TCATGA 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 1 cut(s) 254
BssMI GATC 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 108, 181
Bst6I CTCTTC 1 cut(s) 282
BstC8I GCNNGC 7 cut(s) 6, 48, 94, 126, 242, 251, 325
BstDEI CTNAG 2 cut(s) 165, 348
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 4 cut(s) 52, 246, 250, 333
BstNSI RCATGY 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 20, 23
BstXI CCANNNNNNTGG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 7 cut(s) 6, 48, 94, 126, 242, 251, 325
CciI TCATGA 1 cut(s) 154
Csp6I GTAC 1 cut(s) 298
CviAII CATG 3 cut(s) 52, 155, 250
CviJI RGCY 4 cut(s) 96, 128, 212, 244
CviKI_1 RGCY 4 cut(s) 96, 128, 212, 244
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 2 cut(s) 165, 348
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
FaeI CATG 3 cut(s) 55, 158, 253
FaiI YATR 4 cut(s) 53, 156, 251, 338
FaqI GGGAC 1 cut(s) 190
FatI CATG 3 cut(s) 51, 154, 249
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 9, 12
Fsp4HI GCNGC 2 cut(s) 9, 12
FspBI CTAG 2 cut(s) 21, 260
GluI GCNGC 2 cut(s) 9, 12
HapII CCGG 1 cut(s) 209
Hin1II CATG 3 cut(s) 55, 158, 253
HpaII CCGG 1 cut(s) 209
HphI GGTGA 2 cut(s) 108, 341
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 38, 129
HpyCH4III ACNGT 2 cut(s) 108, 181
HpyCH4V TGCA 2 cut(s) 4, 249
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 246, 250, 333
HpyF3I CTNAG 2 cut(s) 165, 348
Hsp92II CATG 3 cut(s) 55, 158, 253
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 7 cut(s) 66, 106, 138, 222, 267, 293, 337
Lsp1109I GCAGC 2 cut(s) 20, 23
MaeI CTAG 2 cut(s) 21, 260
MaeIII GTNAC 1 cut(s) 230
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 2 cut(s) 54, 299
MhlI GDGCHC 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 2 cut(s) 50, 191
MseI TTAA 2 cut(s) 183, 191
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 1 cut(s) 209
MwoI GCNNNNNNNGC 4 cut(s) 52, 246, 250, 333
NdeII GATC 1 cut(s) 151
NlaIII CATG 3 cut(s) 55, 158, 253
NspI RCATGY 1 cut(s) 253
PaeI GCATGC 1 cut(s) 253
PagI TCATGA 1 cut(s) 154
PkrI GCNGC 2 cut(s) 10, 13
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SaqAI TTAA 2 cut(s) 183, 191
SatI GCNGC 2 cut(s) 9, 12
Sau3AI GATC 1 cut(s) 151
ScaI AGTACT 1 cut(s) 299
SduI GDGCHC 1 cut(s) 87
SetI ASST 6 cut(s) 30, 98, 121, 130, 191, 312
SfcI CTRYAG 1 cut(s) 129
SphI GCATGC 1 cut(s) 253
SsiI CCGC 1 cut(s) 327
SspMI CTAG 2 cut(s) 21, 260
TaaI ACNGT 2 cut(s) 108, 181
TatI WGTACW 1 cut(s) 297
Tru1I TTAA 2 cut(s) 183, 191
Tru9I TTAA 2 cut(s) 183, 191
TscAI CASTG 1 cut(s) 111
TseI GCWGC 2 cut(s) 8, 11
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 111
XceI RCATGY 1 cut(s) 253
XspI CTAG 2 cut(s) 21, 260
ZrmI AGTACT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.