pycom10g09100
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0008115
Physical Location & Seq
Reverse (-)
12015661 .. 12024150
8490 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1344 bp
ATGAGTTCTCACATGCGTTCGAACATGATGAGAAGAGGCAAAGCTCCTCCGCCGTCAGCCGCCAGAAAGCGCGGCGGCGAAAGAAAAACTGGTAGACCTGGTGCAGTTGCAGCTGACGAGTCTACGGACAATGAACCGGTGATTCGGCCTCCAAAACTGAAGACACTTTCCTTTTTGTTAGAAGGGTTGTTTGAGAAGAGGGGATCCGACCGAGAGGAGGCATTGGCATCAATAATTGAGGGATTAAAGCGTAAACTAGACCATGAGTTTCTGGAAAACAATTTTGCTACTTTTCTATTCAGAAGCTTGAATTGCCTAAAAAAGGGTTCTAACAGGGAGAAGCAGCTATCACTTCATGTCATTGGCTTGCTGGCCATAGTCATTTGTTGCGAGGATAAGTTGTCTGAAATATACAGAGAGTTGCTTCCTGTATTTTCCAAAGTTCTGAAATCTGGACCCGCAACCTTAAAGATATTGGATTGTTTGGCTATTGTGGCTTTCTTTGGTGCAACTAACTCGGAGGAGACTGAAAGTGCAATGCAAATTATTTGGAAGTTCATTAATCCTGAGTCTGCCTCAGATGTTGACACCCAAAAGCATTCGGCAGAGGTCCTAGTTGCTGCAGTATATGCTTGGTTGTTTCTTCTTACAAGCATGGAGGGATGGAGACTCAGCCACAACTATTGGAATGGGGCCATTTCTTACTTTTCAAACCTATTAGAGCACGATAATAAATTAGTCCGCGTAGCAGCCAGTGAAGCGCTGGCTTTGATATTTGAAACTGGTAGTCTGGAGAAGTTTTGGAGTGAAGCAAAGGATCCTAGCCTTACAAAATATTCACACATGCAACAATTACTGAAAGAGAATGTCTTAAAGAAGTTAAACTGTCTTTATTCGGACATAAGAAATGAGAATGTTGCAAACAAAGTCCGCAAGGTTGTGAAATATTTTGAGAGTTCTCGTCCCTCGGAATTTTTTTTAACAGTCAATGGAAAAGAACTAAAGTTATCATCATGGTATCAAATTATTCAGTTACAGTTTTTGAAGAGTTTTTTAGCTGGCGGATTTGAGAACCACATGAAGGAAAATGAGAAACTACAGAATTTGTTCGAGTTTAATCCACGCAGAAACAAAAATTTAGGCCCAGAATTGTATGCATCTACCACTGATAAGATTACTGTCTGTTTCTTTGTACCTGAAGAAAGAGATCCAGATAAACTGACAAAGGAAGATCAAAAAAAAGAGAGGGTTTGGAGGAATGCGCTATTAGACAAGGCAAGAACACAACTAATGAGAAAACATCGGCTAATGTCACAGGAAATGAATAGCTGCTGCTACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

448

Amino Acids

51.27

Weight (kDa)

9.03

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 54 - 300 1.1e-50 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 94, 122
AccII CGCG 2 cut(s) 72, 744
AciI CCGC 8 cut(s) 50, 60, 72, 75, 459, 742, 931, 1062
AclWI GGATC 5 cut(s) 198, 211, 812, 825, 1202
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 3 cut(s) 971, 1102, 1135
AcuI CTGAAG 2 cut(s) 179, 1218
AfaI GTAC 1 cut(s) 1194
AfeI AGCGCT 1 cut(s) 762
AfiI CCNNNNNNNGG 3 cut(s) 217, 322, 1081
AgeI ACCGGT 1 cut(s) 136
AgsI TTSAA 4 cut(s) 310, 711, 779, 1045
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 6 cut(s) 44, 113, 306, 346, 1058, 1329
AluI AGCT 6 cut(s) 44, 113, 306, 346, 1058, 1329
Alw21I GWGCWC 1 cut(s) 726
Alw26I GTCTC 2 cut(s) 518, 661
AlwI GGATC 5 cut(s) 198, 211, 812, 825, 1202
Aor51HI AGCGCT 1 cut(s) 762
AoxI GGCC 4 cut(s) 146, 372, 693, 1141
ApeKI GCWGC 6 cut(s) 110, 343, 620, 749, 1329, 1332
ApoI RAATTY 3 cut(s) 971, 1102, 1135
AseI ATTAAT 1 cut(s) 561
AsiGI ACCGGT 1 cut(s) 136
Asp700I GAANNNNTTC 1 cut(s) 1106
AspLEI GCGC 3 cut(s) 72, 763, 1264
AspS9I GGNCC 4 cut(s) 455, 610, 693, 1142
AsuHPI GGTGA 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 20
AvaII GGWCC 2 cut(s) 455, 610
BalI TGGCCA 1 cut(s) 374
BamHI GGATCC 2 cut(s) 203, 817
BbsI GAAGAC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 726
BbvI GCAGC 6 cut(s) 122, 355, 607, 761, 1316, 1319
BccI CCATC 1 cut(s) 657
BceAI ACGGC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 498, 532
BciT130I CCWGG 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 518, 661
BfaI CTAG 3 cut(s) 257, 614, 822
BfmI CTRYAG 2 cut(s) 621, 1097
BfoI RGCGCY 1 cut(s) 764
BisI GCNGC 9 cut(s) 60, 73, 76, 111, 344, 621, 750, 1330, 1333
BlsI GCNGC 9 cut(s) 61, 74, 77, 112, 345, 622, 751, 1331, 1334
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 2 cut(s) 455, 610
BmgT120I GGNCC 4 cut(s) 455, 610, 693, 1142
BmiI GGNNCC 4 cut(s) 205, 457, 694, 819
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 2 cut(s) 236, 1166
BpiI GAAGAC 1 cut(s) 167
BplI GAGNNNNNCTC 2 cut(s) 560, 592
BpmI CTGGAG 1 cut(s) 812
Bpu14I TTCGAA 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 966
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 322, 1081
Bse118I RCCGGY 1 cut(s) 136
Bse1I ACTGG 3 cut(s) 94, 753, 787
Bse3DI GCAATG 1 cut(s) 543
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 966
BseGI GGATG 1 cut(s) 668
BseLI CCNNNNNNNGG 3 cut(s) 217, 322, 1081
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 3 cut(s) 558, 591, 685
BseNI ACTGG 3 cut(s) 94, 753, 787
BseRI GAGGAG 3 cut(s) 36, 230, 536
BseXI GCAGC 6 cut(s) 122, 355, 607, 761, 1316, 1319
BsgI GTGCAG 1 cut(s) 123
Bsh1236I CGCG 2 cut(s) 72, 744
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 4 cut(s) 148, 374, 695, 1143
BshTI ACCGGT 1 cut(s) 136
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 726
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 948
BslI CCNNNNNNNGG 3 cut(s) 217, 322, 1081
BsmAI GTCTC 2 cut(s) 518, 661
BsmFI GGGAC 1 cut(s) 948
BsmI GAATGC 2 cut(s) 598, 1264
BsnI GGCC 4 cut(s) 148, 374, 695, 1143
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 726
Bsp143I GATC 4 cut(s) 203, 817, 1207, 1231
BspACI CCGC 8 cut(s) 50, 60, 72, 75, 459, 742, 931, 1062
BspANI GGCC 4 cut(s) 148, 374, 695, 1143
BspCNI CTCAG 3 cut(s) 559, 590, 684
BspFNI CGCG 2 cut(s) 72, 744
BspLI GGNNCC 4 cut(s) 205, 457, 694, 819
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 5 cut(s) 198, 211, 812, 825, 1202
BspT104I TTCGAA 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 136
BsrI ACTGG 3 cut(s) 94, 753, 787
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 966
BssMI GATC 4 cut(s) 203, 817, 1207, 1231
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 4 cut(s) 887, 985, 1038, 1180
Bst6I CTCTTC 3 cut(s) 28, 191, 1040
BstAPI GCANNNNNTGC 1 cut(s) 629
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 4 cut(s) 368, 372, 765, 1060
BstDEI CTNAG 3 cut(s) 567, 577, 671
BstENI CCTNNNNNAGG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 668
BstFNI CGCG 2 cut(s) 72, 744
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 3 cut(s) 72, 763, 1264
BstKTI GATC 4 cut(s) 206, 820, 1210, 1234
BstMAI GTCTC 2 cut(s) 518, 661
BstMBI GATC 4 cut(s) 203, 817, 1207, 1231
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 5 cut(s) 110, 312, 494, 629, 758
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 2 cut(s) 16, 847
BstSCI CCNGG 1 cut(s) 97
BstSFI CTRYAG 2 cut(s) 621, 1097
BstUI CGCG 2 cut(s) 72, 744
BstV1I GCAGC 6 cut(s) 122, 355, 607, 761, 1316, 1319
BstV2I GAAGAC 1 cut(s) 167
BstX2I RGATCY 3 cut(s) 203, 817, 1207
BstYI RGATCY 3 cut(s) 203, 817, 1207
BsuRI GGCC 4 cut(s) 148, 374, 695, 1143
BtsCI GGATG 1 cut(s) 668
BtsIMutI CAGTG 2 cut(s) 760, 1164
Cac8I GCNNGC 4 cut(s) 368, 372, 765, 1060
CfoI GCGC 3 cut(s) 72, 763, 1264
Cfr10I RCCGGY 1 cut(s) 136
Cfr13I GGNCC 4 cut(s) 455, 610, 693, 1142
CsiI ACCWGGT 1 cut(s) 97
Csp6I GTAC 1 cut(s) 1193
CspAI ACCGGT 1 cut(s) 136
CspCI CAANNNNNGTGG 2 cut(s) 665, 700
CviAII CATG 8 cut(s) 13, 25, 263, 356, 655, 844, 1014, 1078
CviQI GTAC 1 cut(s) 1193
DdeI CTNAG 3 cut(s) 567, 577, 671
DpnI GATC 4 cut(s) 205, 819, 1209, 1233
DpnII GATC 4 cut(s) 203, 817, 1207, 1231
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 3 cut(s) 28, 191, 1040
EarI CTCTTC 3 cut(s) 28, 191, 1040
EciI GGCGGA 2 cut(s) 39, 1077
Eco47I GGWCC 2 cut(s) 455, 610
Eco47III AGCGCT 1 cut(s) 762
Eco57I CTGAAG 2 cut(s) 179, 1218
EcoNI CCTNNNNNAGG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 610
EcoRII CCWGG 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 1159
FaeI CATG 8 cut(s) 16, 28, 266, 359, 658, 847, 1017, 1081
FaqI GGGAC 1 cut(s) 948
FatI CATG 8 cut(s) 12, 24, 262, 355, 654, 843, 1013, 1077
FauI CCCGC 1 cut(s) 466
FblI GTMKAC 2 cut(s) 94, 122
Fnu4HI GCNGC 9 cut(s) 60, 73, 76, 111, 344, 621, 750, 1330, 1333
FokI GGATG 1 cut(s) 675
Fsp4HI GCNGC 9 cut(s) 60, 73, 76, 111, 344, 621, 750, 1330, 1333
FspBI CTAG 3 cut(s) 257, 614, 822
GlaI GCGC 3 cut(s) 71, 762, 1263
GluI GCNGC 9 cut(s) 60, 73, 76, 111, 344, 621, 750, 1330, 1333
GsuI CTGGAG 1 cut(s) 812
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 4 cut(s) 148, 374, 695, 1143
HapII CCGG 1 cut(s) 137
HhaI GCGC 3 cut(s) 72, 763, 1264
Hin1II CATG 8 cut(s) 16, 28, 266, 359, 658, 847, 1017, 1081
Hin6I GCGC 3 cut(s) 70, 761, 1262
HinP1I GCGC 3 cut(s) 70, 761, 1262
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 304
HinfI GANTC 4 cut(s) 119, 142, 569, 669
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 4 cut(s) 95, 123, 254, 586
Hpy188I TCNGA 8 cut(s) 208, 302, 406, 447, 520, 580, 898, 970
Hpy188III TCNNGA 5 cut(s) 272, 453, 566, 791, 1211
Hpy8I GTNNAC 4 cut(s) 95, 123, 254, 586
HpyAV CCTTC 2 cut(s) 176, 1075
HpyCH4III ACNGT 4 cut(s) 887, 985, 1038, 1180
HpyCH4V TGCA 9 cut(s) 104, 110, 509, 536, 541, 623, 847, 920, 1157
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 312, 494, 629, 758
HpyF3I CTNAG 3 cut(s) 567, 577, 671
Hsp92II CATG 8 cut(s) 16, 28, 266, 359, 658, 847, 1017, 1081
HspAI GCGC 3 cut(s) 70, 761, 1262
Kzo9I GATC 4 cut(s) 203, 817, 1207, 1231
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 6 cut(s) 122, 355, 607, 761, 1316, 1319
LweI GCATC 2 cut(s) 236, 1166
MabI ACCWGGT 1 cut(s) 97
MaeI CTAG 3 cut(s) 257, 614, 822
MaeIII GTNAC 2 cut(s) 1032, 1311
MalI GATC 4 cut(s) 205, 819, 1209, 1233
MboI GATC 4 cut(s) 203, 817, 1207, 1231
MboII GAAGA 7 cut(s) 45, 172, 208, 635, 1057, 1211, 1241
MflI RGATCY 3 cut(s) 203, 817, 1207
MhlI GDGCHC 1 cut(s) 726
MlsI TGGCCA 1 cut(s) 374
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 3 cut(s) 128, 578, 663
MmeI TCCRAC 1 cut(s) 231
Mox20I TGGCCA 1 cut(s) 374
Mph1103I ATGCAT 1 cut(s) 1159
MroXI GAANNNNTTC 1 cut(s) 1106
MscI TGGCCA 1 cut(s) 374
MseI TTAA 7 cut(s) 245, 467, 561, 872, 881, 980, 1116
Msp20I TGGCCA 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 99
Mva1269I GAATGC 2 cut(s) 598, 1264
MvaI CCWGG 1 cut(s) 99
MvnI CGCG 2 cut(s) 72, 744
MwoI GCNNNNNNNGC 5 cut(s) 110, 312, 494, 629, 758
NdeII GATC 4 cut(s) 203, 817, 1207, 1231
NlaIII CATG 8 cut(s) 16, 28, 266, 359, 658, 847, 1017, 1081
NlaIV GGNNCC 4 cut(s) 205, 457, 694, 819
NmuCI GTSAC 1 cut(s) 1311
NsiI ATGCAT 1 cut(s) 1159
NspI RCATGY 2 cut(s) 16, 847
NspV TTCGAA 1 cut(s) 20
PctI GAATGC 2 cut(s) 598, 1264
PdmI GAANNNNTTC 1 cut(s) 1106
PfeI GAWTC 1 cut(s) 142
PinAI ACCGGT 1 cut(s) 136
PkrI GCNGC 9 cut(s) 61, 74, 77, 112, 345, 622, 751, 1331, 1334
PleI GAGTC 3 cut(s) 127, 577, 663
PpsI GAGTC 3 cut(s) 127, 577, 663
PpuMI RGGWCCY 1 cut(s) 610
PshBI ATTAAT 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 4 cut(s) 205, 457, 694, 819
PspPI GGNCC 4 cut(s) 455, 610, 693, 1142
PspPPI RGGWCCY 1 cut(s) 610
PstI CTGCAG 1 cut(s) 625
PsuI RGATCY 3 cut(s) 203, 817, 1207
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 1194
RsaNI GTAC 1 cut(s) 1193
SaqAI TTAA 7 cut(s) 245, 467, 561, 872, 881, 980, 1116
SatI GCNGC 9 cut(s) 60, 73, 76, 111, 344, 621, 750, 1330, 1333
Sau3AI GATC 4 cut(s) 203, 817, 1207, 1231
Sau96I GGNCC 4 cut(s) 455, 610, 693, 1142
SchI GAGTC 3 cut(s) 128, 578, 663
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 726
SexAI ACCWGGT 1 cut(s) 97
SfaNI GCATC 2 cut(s) 236, 1166
SfcI CTRYAG 2 cut(s) 621, 1097
SfuI TTCGAA 1 cut(s) 20
SinI GGWCC 2 cut(s) 455, 610
SsiI CCGC 8 cut(s) 50, 60, 72, 75, 459, 742, 931, 1062
SspI AATATT 2 cut(s) 836, 947
SspMI CTAG 3 cut(s) 257, 614, 822
StyD4I CCNGG 1 cut(s) 97
TaaI ACNGT 4 cut(s) 887, 985, 1038, 1180
TaqI TCGA 2 cut(s) 20, 1110
TaqII GACCGA 1 cut(s) 225
TauI GCSGC 3 cut(s) 62, 75, 78
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 7 cut(s) 245, 467, 561, 872, 881, 980, 1116
Tru9I TTAA 7 cut(s) 245, 467, 561, 872, 881, 980, 1116
TscAI CASTG 2 cut(s) 760, 1171
TseFI GTSAC 1 cut(s) 1311
TseI GCWGC 6 cut(s) 110, 343, 620, 749, 1329, 1332
Tsp45I GTSAC 1 cut(s) 1311
TspDTI ATGAA 5 cut(s) 147, 344, 547, 1094, 1337
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 2 cut(s) 760, 1171
VpaK11BI GGWCC 2 cut(s) 455, 610
VspI ATTAAT 1 cut(s) 561
XagI CCTNNNNNAGG 1 cut(s) 320
XapI RAATTY 3 cut(s) 971, 1102, 1135
XceI RCATGY 2 cut(s) 16, 847
XcmI CCANNNNNNNNNTGG 1 cut(s) 760
XmiI GTMKAC 2 cut(s) 94, 122
XmnI GAANNNNTTC 1 cut(s) 1106
XspI CTAG 3 cut(s) 257, 614, 822
Zsp2I ATGCAT 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.