pycom10g11350

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0008796
Physical Location & Seq
Forward (+)
14895483 .. 14898505
3023 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 840 bp
ATGCACCAAAAGTCGGATTCGGATGTGACGATGAGCGTGGAGCAGTCGACGCCCCCGCGGTCGCCTCGCCGCCCGATTTACTACGTCCAGAGCCCCTCCAACCACGACGTCGATAAGATGTCTTACGGTTCGAGCCCCATCGGCTCGCCGCAGCACCACTACTACCACTGCTCCCCTGTGCACCACTCCCGCGAGTCCTCCACGTCGAGATTCTCCGCCTCCCTGAAAAACCCCCGCAGCATGTCCGCCTGGCGGAAGCTGCAGCGCGGCGACGAAGTGGAATTGTCCGAAGACGACGAAAGTGACTCCGCAGTCGACGACGGCGGCCCCGCGCGTAATATTAGGTTGTACTTCTGCTTCGCGCTGCTGTTCGTTGTACTCTTCACGGTGTTTTCTTTGATCTTGTGGGGCGCCAGCAAGGCTTACGAGCCTCGAGTCATTGTTAAGAATATTGTGTTCGAGAGTTTCAATATACAGGCGGGGAGCGACAGGACGGGGGTGTCGACGGAATTGCTGTCGTTGAATTCGACGGTTAGGATCTCTTACAGGAATCCGGCGACATTCTTCGGCGTCCACGTCACTTCTACTCCATTGGAGCTCCACTATTACCAGCTCAAGGTTGCGTCCGGGCAGATTGAAAACTTCTACCAAGCAAGGAAGACGCATCGAACAATAAGGACGGTTGTGCTAGGGTACCAAGTGGCTCTTTACGGTGGAATTTCAGATATTCAACATGTTAAAGAGGATCGAGCAGAGAGTGGTAATACCACTGAATCTGACGTTCGTTGTGAGGTCAAGAGCCGACATTTTGGGAAAACTAGTGAAGTCCAAGTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

280

Amino Acids

31.47

Weight (kDa)

7.8

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 311, 499
AatII GACGTC 1 cut(s) 111
Acc65I GGTACC 1 cut(s) 693
AccB1I GGYRCC 2 cut(s) 410, 693
AccI GTMKAC 3 cut(s) 47, 315, 503
AccII CGCG 6 cut(s) 58, 192, 267, 332, 334, 362
AclWI GGATC 2 cut(s) 545, 753
AcsI RAATTY 2 cut(s) 523, 717
AcyI GRCGYC 4 cut(s) 50, 108, 411, 570
AfaI GTAC 3 cut(s) 350, 378, 695
AfiI CCNNNNNNNGG 3 cut(s) 13, 252, 616
AflIII ACRYGT 1 cut(s) 733
AgsI TTSAA 4 cut(s) 469, 523, 638, 731
AhlI ACTAGT 1 cut(s) 818
AjiI CACGTC 2 cut(s) 204, 577
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 3 cut(s) 259, 598, 613
AluI AGCT 3 cut(s) 259, 598, 613
Alw21I GWGCWC 2 cut(s) 183, 600
Alw44I GTGCAC 1 cut(s) 179
AlwI GGATC 2 cut(s) 545, 753
Ama87I CYCGRG 1 cut(s) 432
AoxI GGCC 1 cut(s) 325
ApaLI GTGCAC 1 cut(s) 179
ApeKI GCWGC 5 cut(s) 151, 237, 259, 262, 364
ApoI RAATTY 2 cut(s) 523, 717
Asp718I GGTACC 1 cut(s) 693
AspLEI GCGC 4 cut(s) 267, 334, 364, 413
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 628
AvaI CYCGRG 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 2 cut(s) 410, 693
BanII GRGCYC 3 cut(s) 95, 137, 600
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
BbsI GAAGAC 2 cut(s) 297, 665
Bbv12I GWGCWC 2 cut(s) 183, 600
BbvI GCAGC 5 cut(s) 163, 246, 249, 274, 351
BccI CCATC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 337
BcgI CGANNNNNNTGC 2 cut(s) 493, 527
BciT130I CCWGG 1 cut(s) 250
BcnI CCSGG 1 cut(s) 628
BcuI ACTAGT 1 cut(s) 818
BfaI CTAG 2 cut(s) 689, 819
BfmI CTRYAG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 414
BglI GCCNNNNNGGC 2 cut(s) 141, 419
BisI GCNGC 9 cut(s) 70, 149, 152, 238, 260, 263, 268, 325, 365
BlsI GCNGC 9 cut(s) 71, 150, 153, 239, 261, 264, 269, 326, 366
Bme1390I CCNGG 2 cut(s) 250, 628
BmeT110I CYCGRG 1 cut(s) 432
BmgBI CACGTC 2 cut(s) 204, 577
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 3 cut(s) 328, 412, 695
BmrFI CCNGG 2 cut(s) 250, 628
BmsI GCATC 1 cut(s) 673
BpiI GAAGAC 2 cut(s) 297, 665
BpuEI CTTGAG 1 cut(s) 599
BpuMI CCSGG 1 cut(s) 628
BsaHI GRCGYC 4 cut(s) 50, 108, 411, 570
BsaJI CCNNGG 1 cut(s) 56
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 571, 601
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 252, 616
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 3 cut(s) 13, 252, 616
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 5 cut(s) 163, 246, 249, 274, 351
Bsh1236I CGCG 6 cut(s) 58, 192, 267, 332, 334, 362
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 1 cut(s) 327
BshNI GGYRCC 2 cut(s) 410, 693
BsiEI CGRYCG 1 cut(s) 62
BsiHKAI GWGCWC 2 cut(s) 183, 600
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 2 cut(s) 554, 627
BslI CCNNNNNNNGG 3 cut(s) 13, 252, 616
BsnI GGCC 1 cut(s) 327
BsoBI CYCGRG 1 cut(s) 432
Bsp1286I GDGCHC 4 cut(s) 95, 137, 183, 600
Bsp143I GATC 3 cut(s) 399, 537, 745
BspANI GGCC 1 cut(s) 327
BspFNI CGCG 6 cut(s) 58, 192, 267, 332, 334, 362
BspLI GGNNCC 3 cut(s) 328, 412, 695
BspMAI CTGCAG 1 cut(s) 264
BspPI GGATC 2 cut(s) 545, 753
BspT107I GGYRCC 2 cut(s) 410, 693
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 3 cut(s) 399, 537, 745
BssNI GRCGYC 4 cut(s) 50, 108, 411, 570
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 5 cut(s) 128, 388, 532, 682, 713
Bst6I CTCTTC 1 cut(s) 386
BstACI GRCGYC 4 cut(s) 50, 108, 411, 570
BstC8I GCNNGC 2 cut(s) 146, 415
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 6 cut(s) 58, 192, 267, 332, 334, 362
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 4 cut(s) 267, 334, 364, 413
BstKTI GATC 3 cut(s) 402, 540, 748
BstMBI GATC 3 cut(s) 399, 537, 745
BstMCI CGRYCG 1 cut(s) 62
BstMWI GCNNNNNNNGC 4 cut(s) 49, 141, 259, 419
BstNI CCWGG 1 cut(s) 250
BstNSI RCATGY 2 cut(s) 244, 737
BstSCI CCNGG 2 cut(s) 248, 626
BstSFI CTRYAG 1 cut(s) 260
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 6 cut(s) 58, 192, 267, 332, 334, 362
BstV1I GCAGC 5 cut(s) 163, 246, 249, 274, 351
BstV2I GAAGAC 2 cut(s) 297, 665
BstX2I RGATCY 1 cut(s) 537
BstYI RGATCY 1 cut(s) 537
BsuRI GGCC 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 56
BtrI CACGTC 2 cut(s) 204, 577
BtsCI GGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 2 cut(s) 166, 768
Cac8I GCNNGC 2 cut(s) 146, 415
CfoI GCGC 4 cut(s) 267, 334, 364, 413
Cfr13I GGNCC 1 cut(s) 326
Cfr42I CCGCGG 1 cut(s) 59
CseI GACGC 4 cut(s) 58, 559, 612, 670
Csp6I GTAC 3 cut(s) 349, 377, 694
CviAII CATG 2 cut(s) 241, 734
CviQI GTAC 3 cut(s) 349, 377, 694
DinI GGCGCC 1 cut(s) 412
DpnI GATC 3 cut(s) 401, 539, 747
DpnII GATC 3 cut(s) 399, 537, 745
DrdI GACNNNNNNGTC 2 cut(s) 311, 499
DseDI GACNNNNNNGTC 2 cut(s) 311, 499
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
EciI GGCGGA 3 cut(s) 205, 235, 268
Ecl136II GAGCTC 1 cut(s) 598
Eco24I GRGCYC 3 cut(s) 95, 137, 600
Eco53kI GAGCTC 1 cut(s) 598
Eco88I CYCGRG 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 248
EcoT38I GRGCYC 3 cut(s) 95, 137, 600
EgeI GGCGCC 1 cut(s) 412
EheI GGCGCC 1 cut(s) 412
FaeI CATG 2 cut(s) 244, 737
FaiI YATR 4 cut(s) 242, 473, 735, 838
FalI AAGNNNNNCTT 2 cut(s) 690, 722
FatI CATG 2 cut(s) 240, 733
FauI CCCGC 5 cut(s) 63, 197, 242, 337, 472
FblI GTMKAC 3 cut(s) 47, 315, 503
Fnu4HI GCNGC 9 cut(s) 70, 149, 152, 238, 260, 263, 268, 325, 365
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 3 cut(s) 95, 137, 600
Fsp4HI GCNGC 9 cut(s) 70, 149, 152, 238, 260, 263, 268, 325, 365
FspBI CTAG 2 cut(s) 689, 819
GlaI GCGC 4 cut(s) 266, 333, 363, 412
GluI GCNGC 9 cut(s) 70, 149, 152, 238, 260, 263, 268, 325, 365
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 1 cut(s) 327
HapII CCGG 2 cut(s) 554, 627
HgaI GACGC 4 cut(s) 58, 559, 612, 670
HhaI GCGC 4 cut(s) 267, 334, 364, 413
Hin1I GRCGYC 4 cut(s) 50, 108, 411, 570
Hin1II CATG 2 cut(s) 244, 737
Hin6I GCGC 4 cut(s) 265, 332, 362, 411
HinP1I GCGC 4 cut(s) 265, 332, 362, 411
HincII GTYRAC 3 cut(s) 48, 316, 504
HindII GTYRAC 3 cut(s) 48, 316, 504
HinfI GANTC 7 cut(s) 17, 194, 210, 305, 435, 550, 773
HpaII CCGG 2 cut(s) 554, 627
Hpy166II GTNNAC 5 cut(s) 48, 181, 316, 504, 574
Hpy188I TCNGA 5 cut(s) 16, 22, 289, 724, 778
Hpy188III TCNNGA 4 cut(s) 88, 207, 460, 796
Hpy8I GTNNAC 5 cut(s) 48, 181, 316, 504, 574
HpyCH4III ACNGT 5 cut(s) 128, 388, 532, 682, 713
HpyCH4IV ACGT 5 cut(s) 84, 108, 203, 576, 780
HpyCH4V TGCA 3 cut(s) 4, 181, 262
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 141, 259, 419
HpySE526I ACGT 5 cut(s) 84, 108, 203, 576, 780
Hsp92I GRCGYC 4 cut(s) 50, 108, 411, 570
Hsp92II CATG 2 cut(s) 244, 737
HspAI GCGC 4 cut(s) 265, 332, 362, 411
KasI GGCGCC 1 cut(s) 410
KpnI GGTACC 1 cut(s) 697
KspI CCGCGG 1 cut(s) 59
Kzo9I GATC 3 cut(s) 399, 537, 745
LmnI GCTCC 5 cut(s) 40, 176, 483, 595, 603
Lsp1109I GCAGC 5 cut(s) 163, 246, 249, 274, 351
LweI GCATC 1 cut(s) 673
MaeI CTAG 2 cut(s) 689, 819
MaeII ACGT 5 cut(s) 84, 108, 203, 576, 780
MaeIII GTNAC 3 cut(s) 25, 302, 577
MalI GATC 3 cut(s) 401, 539, 747
MboI GATC 3 cut(s) 399, 537, 745
MboII GAAGA 4 cut(s) 302, 373, 556, 670
MflI RGATCY 1 cut(s) 537
MhlI GDGCHC 4 cut(s) 95, 137, 183, 600
MluCI AATT 4 cut(s) 281, 509, 523, 717
Mly113I GGCGCC 1 cut(s) 411
MlyI GAGTC 3 cut(s) 203, 299, 444
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 7 cut(s) 75, 106, 208, 229, 441, 736, 784
MseI TTAA 2 cut(s) 444, 738
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 2 cut(s) 554, 627
MspR9I CCNGG 2 cut(s) 250, 628
MvaI CCWGG 1 cut(s) 250
MvnI CGCG 6 cut(s) 58, 192, 267, 332, 334, 362
MwoI GCNNNNNNNGC 4 cut(s) 49, 141, 259, 419
NarI GGCGCC 1 cut(s) 411
NciI CCSGG 1 cut(s) 628
NdeII GATC 3 cut(s) 399, 537, 745
NlaIII CATG 2 cut(s) 244, 737
NlaIV GGNNCC 3 cut(s) 328, 412, 695
NmuCI GTSAC 3 cut(s) 25, 302, 577
NspI RCATGY 2 cut(s) 244, 737
PaeR7I CTCGAG 1 cut(s) 432
PciI ACATGT 1 cut(s) 733
PcsI WCGNNNNNNNCGW 4 cut(s) 26, 500, 524, 573
PfeI GAWTC 4 cut(s) 17, 210, 550, 773
PkrI GCNGC 9 cut(s) 71, 150, 153, 239, 261, 264, 269, 326, 366
PleI GAGTC 3 cut(s) 202, 299, 443
PluTI GGCGCC 1 cut(s) 414
PpsI GAGTC 3 cut(s) 202, 299, 443
PscI ACATGT 1 cut(s) 733
Psp124BI GAGCTC 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 3 cut(s) 328, 412, 695
PspPI GGNCC 1 cut(s) 326
PspXI VCTCGAGB 1 cut(s) 432
PstI CTGCAG 1 cut(s) 264
PsuI RGATCY 1 cut(s) 537
RsaI GTAC 3 cut(s) 350, 378, 695
RsaNI GTAC 3 cut(s) 349, 377, 694
SacI GAGCTC 1 cut(s) 600
SacII CCGCGG 1 cut(s) 59
SalI GTCGAC 3 cut(s) 46, 314, 502
SaqAI TTAA 2 cut(s) 444, 738
SatI GCNGC 9 cut(s) 70, 149, 152, 238, 260, 263, 268, 325, 365
Sau3AI GATC 3 cut(s) 399, 537, 745
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 3 cut(s) 203, 299, 444
ScrFI CCNGG 2 cut(s) 250, 628
SduI GDGCHC 4 cut(s) 95, 137, 183, 600
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 1 cut(s) 260
SfoI GGCGCC 1 cut(s) 412
Sfr274I CTCGAG 1 cut(s) 432
Sfr303I CCGCGG 1 cut(s) 59
SgrBI CCGCGG 1 cut(s) 59
SlaI CTCGAG 1 cut(s) 432
SmlI CTYRAG 2 cut(s) 432, 614
SmoI CTYRAG 2 cut(s) 432, 614
SpeI ACTAGT 1 cut(s) 818
Sse9I AATT 4 cut(s) 281, 509, 523, 717
SspDI GGCGCC 1 cut(s) 410
SspI AATATT 2 cut(s) 340, 451
SspMI CTAG 2 cut(s) 689, 819
SstI GAGCTC 1 cut(s) 600
StyD4I CCNGG 2 cut(s) 248, 626
TaaI ACNGT 5 cut(s) 128, 388, 532, 682, 713
TaiI ACGT 5 cut(s) 87, 111, 206, 579, 783
TasI AATT 4 cut(s) 281, 509, 523, 717
TatI WGTACW 2 cut(s) 348, 376
TauI GCSGC 4 cut(s) 72, 151, 270, 327
TfiI GAWTC 4 cut(s) 17, 210, 550, 773
Tru1I TTAA 2 cut(s) 444, 738
Tru9I TTAA 2 cut(s) 444, 738
TscAI CASTG 2 cut(s) 173, 775
TseFI GTSAC 3 cut(s) 25, 302, 577
TseI GCWGC 5 cut(s) 151, 237, 259, 262, 364
Tsp45I GTSAC 3 cut(s) 25, 302, 577
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 2 cut(s) 173, 775
VneI GTGCAC 1 cut(s) 179
XapI RAATTY 2 cut(s) 523, 717
XceI RCATGY 2 cut(s) 244, 737
XhoI CTCGAG 1 cut(s) 432
XmiI GTMKAC 3 cut(s) 47, 315, 503
XspI CTAG 2 cut(s) 689, 819
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.