Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010779

Physical Location & Seq

Genomic Coordinates Reverse (-)

15309215 .. 15311073

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11740.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAGTGTGCATACCACTCGAGTCCCAAGGAAGTGTAATGAAAAATGTTACCAGAACCGCTTGGTGCCTGTTCTTAATAAAAAGCATGCTGTTCAGCTCACAAAATTTGATTACAGACTTTCAAATAGGTTGAATTCAGATTTACAAAAGCTGAGATGTAGAGCCAATTATCAAGCCTTGAAATTTACCAACACGATTAGCGAAATGGGTAAAAAGTTGGTTGAGAGAATGAGAATGAAAAGCAAGCATTTCATTGCCCTGCATCTGAGGTTTGAGCCTGATATGCTGGCGTTTTCTGGATGCGATTATGGTGGGGGAGAAAAGGAAAGGAAAGAACTTGGCAAACTTCGGAAAAGGTGGAAAACTTTACATGCAAGCAACCCTGACAAGGTACGAAGACATGGCAGATGCCCGCTAACTCCAGAGGAAGTTGGTCTCATGCTTAGAGCATTGGGTTTCGGAAATGATATTCACTTGTATGTGGCATCCGGTGAAGTATATGGAGGTGAAGAGACAATGGCACCACTGAAAGTACTTTTCCCAAACTTCCACACAAAAGAGACTTTATTAAGTAAGGAGGAGTTGGCACCATTTTCATCCTTCTCTTCTCGAATGGCTGCACTGGACTTCATTGTTTGTGATGAAAGTGATGTTTTCATCACCAACAACAATGGCAATATGGCTAAAATGTTAGCTGGTCGAAGGAGATACTTTGGTCACAAACCAACAATCCGTCCAAATGCTAAGAAACTGTCTCCGTTGTTCATAAATCGTAATAACATGACATGGGAAGAATTTGCATCGAGGCTTCGAACGAGTCAAATTGGATTCATGGGAGAGCCAAATGAGATAAAGCCAGGCAGGGGTGAGTTCCACGAAAACCCAGTAGCCTGCATTTGTAGTGCATCCAACACAAAGGCTAAGGAAGATTATACAAACAAGGACAGTGGTTATGCGACAGATGAGCAAGTAACTGAGGACGAGCAAGATTGGTCTGAGGCTGATTATGATGAAATTACAAATAGGTCTCTAGGGAAAGTGCTGCCTAGTGTAAGAGTTTTGGATCCAAGTCTTCTACATAAGTCCGACCAACCAGAAATCGAAGAATTCTTTTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

374

Amino Acids

42.75

Weight (kDa)

8.95

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38390
fragaria_vesca	FvH4_2g16370
malus_domestica	MD05G1132900.v1.1 MD10G1136700.v1.1 MD10G1138000.v1.1
prunus_persica	Prupe.8G176500_v2.0.a1
pyrus_communis	pycom05g12960 pycom10g11740
rosa_chinensis	RchiOBHm_Chr6g0280121
rosa_laevigata	RLG00000013087
rosa_multiflora	Rmu_sc0007137.1_g000007 Rmu_sc0029195.1_g000001 Rmu_sc0029196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188360
rosa_rugosa	Rorug06G0130100
rosa_samantha	Rh6AG240400 Rh6BG244200 Rh6CG245800 Rh6DG236700
rosa_wichuraiana	Rw6G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	64, 520, 586
AciI	CCGC	2 cut(s)	58, 413
AclWI	GGATC	2 cut(s)	1058, 1071
AcsI	RAATTY	5 cut(s)	104, 133, 182, 794, 1106
AfaI	GTAC	2 cut(s)	393, 534
AfiI	CCNNNNNNNGG	2 cut(s)	388, 863
AgsI	TTSAA	3 cut(s)	123, 133, 181
AjnI	CCWGG	1 cut(s)	856
AluBI	AGCT	3 cut(s)	97, 151, 695
AluI	AGCT	3 cut(s)	97, 151, 695
Alw26I	GTCTC	5 cut(s)	440, 506, 554, 759, 1032
AlwI	GGATC	2 cut(s)	1058, 1071
Ama87I	CYCGRG	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	617, 1042
ApoI	RAATTY	5 cut(s)	104, 133, 182, 794, 1106
AsuHPI	GGTGA	4 cut(s)	503, 518, 652, 878
AsuII	TTCGAA	1 cut(s)	811
AvaI	CYCGRG	1 cut(s)	18
BaeI	ACNNNNGTAYC	2 cut(s)	700, 733
BamHI	GGATCC	1 cut(s)	1063
BanI	GGYRCC	3 cut(s)	64, 520, 586
BbsI	GAAGAC	2 cut(s)	403, 1064
BbvI	GCAGC	2 cut(s)	604, 1029
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	858
BcoDI	GTCTC	5 cut(s)	440, 506, 554, 759, 1032
BfaI	CTAG	2 cut(s)	1031, 1047
BisI	GCNGC	2 cut(s)	618, 1043
BlsI	GCNGC	2 cut(s)	619, 1044
BmcAI	AGTACT	1 cut(s)	534
Bme1390I	CCNGG	1 cut(s)	858
BmeT110I	CYCGRG	1 cut(s)	18
BmiI	GGNNCC	4 cut(s)	66, 522, 588, 1065
BmrFI	CCNGG	1 cut(s)	858
BmrI	ACTGGG	1 cut(s)	878
BmsI	GCATC	6 cut(s)	271, 290, 398, 494, 809, 914
BmuI	ACTGGG	1 cut(s)	878
BpiI	GAAGAC	2 cut(s)	403, 1064
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	921
Bpu14I	TTCGAA	1 cut(s)	811
BsaI	GGTCTC	2 cut(s)	440, 1032
BsaJI	CCNNGG	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 863
Bse1I	ACTGG	2 cut(s)	627, 884
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	858
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	4 cut(s)	305, 485, 596, 905
BseLI	CCNNNNNNNGG	2 cut(s)	388, 863
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	4 cut(s)	143, 257, 966, 987
BseNI	ACTGG	2 cut(s)	627, 884
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	2 cut(s)	604, 1029
BsgI	GTGCAG	1 cut(s)	603
BshNI	GGYRCC	3 cut(s)	64, 520, 586
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	388, 863
BsmAI	GTCTC	5 cut(s)	440, 506, 554, 759, 1032
BsmFI	GGGAC	1 cut(s)	8
Bso31I	GGTCTC	2 cut(s)	440, 1032
BsoBI	CYCGRG	1 cut(s)	18
Bsp119I	TTCGAA	1 cut(s)	811
Bsp143I	GATC	1 cut(s)	1063
BspACI	CCGC	2 cut(s)	58, 413
BspCNI	CTCAG	4 cut(s)	144, 258, 967, 988
BspLI	GGNNCC	4 cut(s)	66, 522, 588, 1065
BspPI	GGATC	2 cut(s)	1058, 1071
BspT104I	TTCGAA	1 cut(s)	811
BspT107I	GGYRCC	3 cut(s)	64, 520, 586
BspTNI	GGTCTC	2 cut(s)	440, 1032
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	627, 884
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	1063
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	858
Bst4CI	ACNGT	2 cut(s)	753, 947
Bst6I	CTCTTC	2 cut(s)	504, 610
BstBI	TTCGAA	1 cut(s)	811
BstC8I	GCNNGC	6 cut(s)	87, 245, 288, 376, 413, 892
BstDEI	CTNAG	7 cut(s)	152, 266, 443, 744, 921, 975, 996
BstF5I	GGATG	4 cut(s)	305, 485, 596, 905
BstKTI	GATC	1 cut(s)	1066
BstMAI	GTCTC	5 cut(s)	440, 506, 554, 759, 1032
BstMBI	GATC	1 cut(s)	1063
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstNI	CCWGG	1 cut(s)	858
BstNSI	RCATGY	2 cut(s)	89, 374
BstSCI	CCNGG	1 cut(s)	856
BstV1I	GCAGC	2 cut(s)	604, 1029
BstV2I	GAAGAC	2 cut(s)	403, 1064
BstX2I	RGATCY	1 cut(s)	1063
BstYI	RGATCY	1 cut(s)	1063
BtsCI	GGATG	4 cut(s)	305, 485, 596, 905
BtsIMutI	CAGTG	3 cut(s)	524, 620, 952
Cac8I	GCNNGC	6 cut(s)	87, 245, 288, 376, 413, 892
Csp6I	GTAC	2 cut(s)	392, 533
CspCI	CAANNNNNGTGG	2 cut(s)	928, 963
CviAII	CATG	7 cut(s)	86, 371, 401, 439, 781, 786, 832
CviQI	GTAC	2 cut(s)	392, 533
DdeI	CTNAG	7 cut(s)	152, 266, 443, 744, 921, 975, 996
DpnI	GATC	1 cut(s)	1065
DpnII	GATC	1 cut(s)	1063
Eam1104I	CTCTTC	2 cut(s)	504, 610
EarI	CTCTTC	2 cut(s)	504, 610
Eco130I	CCWWGG	1 cut(s)	26
Eco31I	GGTCTC	2 cut(s)	440, 1032
Eco88I	CYCGRG	1 cut(s)	18
EcoRI	GAATTC	2 cut(s)	133, 1106
EcoRII	CCWGG	1 cut(s)	856
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	7 cut(s)	89, 374, 404, 442, 784, 789, 835
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	7 cut(s)	85, 370, 400, 438, 780, 785, 831
FauI	CCCGC	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	618, 1043
FokI	GGATG	4 cut(s)	312, 472, 583, 892
Fsp4HI	GCNGC	2 cut(s)	618, 1043
FspBI	CTAG	2 cut(s)	1031, 1047
GluI	GCNGC	2 cut(s)	618, 1043
GsuI	CTGGAG	1 cut(s)	405
HapII	CCGG	1 cut(s)	489
Hin1II	CATG	7 cut(s)	89, 374, 404, 442, 784, 789, 835
HinfI	GANTC	3 cut(s)	21, 817, 828
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	4 cut(s)	503, 518, 652, 878
Hpy188I	TCNGA	7 cut(s)	139, 267, 351, 461, 997, 1087, 1117
Hpy188III	TCNNGA	3 cut(s)	297, 422, 609
HpyAV	CCTTC	2 cut(s)	610, 696
HpyCH4III	ACNGT	2 cut(s)	753, 947
HpyCH4V	TGCA	7 cut(s)	10, 262, 374, 620, 800, 894, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	7 cut(s)	152, 266, 443, 744, 921, 975, 996
Hsp92II	CATG	7 cut(s)	89, 374, 404, 442, 784, 789, 835
Kzo9I	GATC	1 cut(s)	1063
Lsp1109I	GCAGC	2 cut(s)	604, 1029
LweI	GCATC	6 cut(s)	271, 290, 398, 494, 809, 914
MaeI	CTAG	2 cut(s)	1031, 1047
MaeIII	GTNAC	3 cut(s)	47, 716, 970
MalI	GATC	1 cut(s)	1065
MboI	GATC	1 cut(s)	1063
MboII	GAAGA	7 cut(s)	408, 521, 597, 803, 938, 1064, 1115
MflI	RGATCY	1 cut(s)	1063
MluCI	AATT	8 cut(s)	104, 133, 166, 182, 794, 822, 1014, 1106
MlyI	GAGTC	2 cut(s)	30, 826
MmeI	TCCRAC	2 cut(s)	933, 1110
MnlI	CCTC	7 cut(s)	261, 418, 497, 571, 798, 970, 991
MseI	TTAA	2 cut(s)	75, 569
MslI	CAYNNNNRTG	1 cut(s)	477
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	858
MvaI	CCWGG	1 cut(s)	858
MwoI	GCNNNNNNNGC	1 cut(s)	283
NdeII	GATC	1 cut(s)	1063
NlaIII	CATG	7 cut(s)	89, 374, 404, 442, 784, 789, 835
NlaIV	GGNNCC	4 cut(s)	66, 522, 588, 1065
NmuCI	GTSAC	1 cut(s)	716
NspI	RCATGY	2 cut(s)	89, 374
NspV	TTCGAA	1 cut(s)	811
PaeI	GCATGC	1 cut(s)	89
PaeR7I	CTCGAG	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	828
PkrI	GCNGC	2 cut(s)	619, 1044
PleI	GAGTC	2 cut(s)	29, 825
PpsI	GAGTC	2 cut(s)	29, 825
Psp6I	CCWGG	1 cut(s)	856
PspGI	CCWGG	1 cut(s)	856
PspN4I	GGNNCC	4 cut(s)	66, 522, 588, 1065
PspXI	VCTCGAGB	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	1063
RsaI	GTAC	2 cut(s)	393, 534
RsaNI	GTAC	2 cut(s)	392, 533
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	75, 569
SatI	GCNGC	2 cut(s)	618, 1043
Sau3AI	GATC	1 cut(s)	1063
ScaI	AGTACT	1 cut(s)	534
SchI	GAGTC	2 cut(s)	30, 826
ScrFI	CCNGG	1 cut(s)	858
SetI	ASST	9 cut(s)	99, 131, 153, 272, 359, 393, 508, 697, 1028
SfaNI	GCATC	6 cut(s)	271, 290, 398, 494, 809, 914
Sfr274I	CTCGAG	1 cut(s)	18
SfuI	TTCGAA	1 cut(s)	811
SlaI	CTCGAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	8 cut(s)	104, 133, 166, 182, 794, 822, 1014, 1106
SsiI	CCGC	2 cut(s)	58, 413
SspMI	CTAG	2 cut(s)	1031, 1047
StyD4I	CCNGG	1 cut(s)	856
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	753, 947
TaqI	TCGA	6 cut(s)	19, 610, 700, 803, 811, 1101
TasI	AATT	8 cut(s)	104, 133, 166, 182, 794, 822, 1014, 1106
TatI	WGTACW	1 cut(s)	532
TfiI	GAWTC	1 cut(s)	828
Tru1I	TTAA	2 cut(s)	75, 569
Tru9I	TTAA	2 cut(s)	75, 569
TscAI	CASTG	3 cut(s)	531, 627, 952
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	2 cut(s)	617, 1042
Tsp45I	GTSAC	1 cut(s)	716
TspGWI	ACGGA	2 cut(s)	722, 747
TspRI	CASTG	3 cut(s)	531, 627, 952
XapI	RAATTY	5 cut(s)	104, 133, 182, 794, 1106
XceI	RCATGY	2 cut(s)	89, 374
XhoI	CTCGAG	1 cut(s)	18
XspI	CTAG	2 cut(s)	1031, 1047
ZrmI	AGTACT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.