Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029196.1

Orthogroup ID

OG0010779

Physical Location & Seq

Genomic Coordinates Reverse (-)

1659 .. 3425

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029196.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgcgtgtcccgaggaagtgtaatgtgaaatgctacctgaatcgcgtggtgcctgttcttaataaaaagcatgttgttcagctcacaaagtttgattacaggctttcaaataacctggaatcacatttacagaagctgagatgtaggactaattatcacgccttgaaatttactgacaatattaatgaaatggggaggaaattggttgagagaatgaagatggaaaacaagcatttcattgccctgcatttgaggtttgagccggatatgctggcattttctggttgttattttggtgggggagaaaaagaaaggaatgaacttggtgcaattcggaaaaggtggaaaactctacatccaaccaaccctgacaaggtacgaagacgtggtagatgccctctaagcccaggagaagttggtcttatgcttagagcattgggcttcggaagtgatgttcacttgtatgtggcatcaggtgaagtgtataaaggtgaagagacattggcaccgctgaaagcacttttcccaaacttccatacaaaggagactatagcaagtaaggaagagttggaaccattttcttccttctcttctcgcatggctgcactagatttcattgtctgtgatgaaagtgatgttttcgtcaccaacaataatggcaacatggctagaatattagctggtcgaaggagatactttgggcataaaccaacaatccgtccaaacactaagaaactgtacaagttgttcattaaccaaaataacatgacatgggaggaatttgcctcccgggttcgaactagtcaaattggatctatgggagagccaaatgagaaaaagccaggcaagggtgagttccatgaaaatccagcagactgcatctgtaacacatctaatacaaagtccaaaaatgtccgaattcctcaaagtgaaatcaatgaaggcagtaacatcagcaaggaagatgagacaagtaaggatagtggttatgcgacagatgggcacatgacggatgacgagcaattttggcctgagatggattatgtggatactggaaacaagtctctgggaaaagcgcctagtcaaagattttcgtatcagggtcttaattatgatctgccagaacttctagagctcttttcagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

382

Amino Acids

43.8

Weight (kDa)

9.01

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38390
fragaria_vesca	FvH4_2g16370
malus_domestica	MD05G1132900.v1.1 MD10G1136700.v1.1 MD10G1138000.v1.1
prunus_persica	Prupe.8G176500_v2.0.a1
pyrus_communis	pycom05g12960 pycom10g11740
rosa_chinensis	RchiOBHm_Chr6g0280121
rosa_laevigata	RLG00000013087
rosa_multiflora	Rmu_sc0007137.1_g000007 Rmu_sc0029195.1_g000001 Rmu_sc0029196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188360
rosa_rugosa	Rorug06G0130100
rosa_samantha	Rh6AG240400 Rh6BG244200 Rh6CG245800 Rh6DG236700
rosa_wichuraiana	Rw6G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	49, 505
AccII	CGCG	1 cut(s)	45
AciI	CCGC	1 cut(s)	509
AclWI	GGATC	1 cut(s)	820
AcsI	RAATTY	3 cut(s)	167, 779, 918
AfaI	GTAC	2 cut(s)	378, 740
AfiI	CCNNNNNNNGG	3 cut(s)	373, 541, 848
AgsI	TTSAA	2 cut(s)	108, 166
AhlI	ACTAGT	1 cut(s)	800
AjiI	CACGTC	1 cut(s)	386
AjnI	CCWGG	3 cut(s)	114, 406, 841
AloI	GAACNNNNNNTCC	2 cut(s)	438, 470
AluBI	AGCT	4 cut(s)	82, 136, 680, 1135
AluI	AGCT	4 cut(s)	82, 136, 680, 1135
Alw21I	GWGCWC	1 cut(s)	1137
Alw26I	GTCTC	4 cut(s)	491, 539, 962, 1068
AlwI	GGATC	1 cut(s)	820
AlwNI	CAGNNNCTG	1 cut(s)	136
Ama87I	CYCGRG	2 cut(s)	10, 789
AoxI	GGCC	1 cut(s)	1028
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	3 cut(s)	167, 779, 918
AseI	ATTAAT	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	1078
AsuC2I	CCSGG	2 cut(s)	790, 791
AsuHPI	GGTGA	4 cut(s)	488, 503, 637, 863
AsuII	TTCGAA	1 cut(s)	796
AvaI	CYCGRG	2 cut(s)	10, 789
BaeGI	GKGCMC	1 cut(s)	1005
BanI	GGYRCC	2 cut(s)	49, 505
BanII	GRGCYC	1 cut(s)	1137
BbsI	GAAGAC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	1137
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	3 cut(s)	214, 992, 1030
BciT130I	CCWGG	3 cut(s)	116, 408, 843
BciVI	GTATCC	1 cut(s)	1042
BcnI	CCSGG	2 cut(s)	790, 791
BcoDI	GTCTC	4 cut(s)	491, 539, 962, 1068
BcuI	ACTAGT	1 cut(s)	800
BfaI	CTAG	5 cut(s)	608, 669, 801, 1080, 1130
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	1 cut(s)	1079
BfuI	GTATCC	1 cut(s)	1042
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
Bme1390I	CCNGG	5 cut(s)	116, 408, 790, 791, 843
BmeT110I	CYCGRG	2 cut(s)	10, 789
BmgBI	CACGTC	1 cut(s)	386
BmiI	GGNNCC	3 cut(s)	51, 507, 573
BmrFI	CCNGG	5 cut(s)	116, 408, 790, 791, 843
BmsI	GCATC	3 cut(s)	383, 479, 888
BpiI	GAAGAC	1 cut(s)	388
Bpu14I	TTCGAA	1 cut(s)	796
BpuMI	CCSGG	2 cut(s)	790, 791
BsaJI	CCNNGG	3 cut(s)	11, 406, 789
Bsc4I	CCNNNNNNNGG	3 cut(s)	373, 541, 848
Bse1I	ACTGG	1 cut(s)	1057
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	3 cut(s)	116, 408, 843
BseDI	CCNNGG	3 cut(s)	11, 406, 789
BseGI	GGATG	2 cut(s)	355, 1018
BseLI	CCNNNNNNNGG	3 cut(s)	373, 541, 848
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	128, 1023
BseNI	ACTGG	1 cut(s)	1057
BseSI	GKGCMC	1 cut(s)	1005
BseXI	GCAGC	1 cut(s)	589
BsgI	GTGCAG	1 cut(s)	588
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	1030
BshNI	GGYRCC	2 cut(s)	49, 505
BsiHKAI	GWGCWC	1 cut(s)	1137
BsiHKCI	CYCGRG	2 cut(s)	10, 789
BsiSI	CCGG	2 cut(s)	263, 790
BslI	CCNNNNNNNGG	3 cut(s)	373, 541, 848
BsmAI	GTCTC	4 cut(s)	491, 539, 962, 1068
BsnI	GGCC	1 cut(s)	1030
BsoBI	CYCGRG	2 cut(s)	10, 789
Bsp119I	TTCGAA	1 cut(s)	796
Bsp1286I	GDGCHC	2 cut(s)	1005, 1137
Bsp1407I	TGTACA	1 cut(s)	738
Bsp143I	GATC	2 cut(s)	812, 1114
BspACI	CCGC	1 cut(s)	509
BspANI	GGCC	1 cut(s)	1030
BspCNI	CTCAG	2 cut(s)	129, 1024
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	51, 507, 573
BspPI	GGATC	1 cut(s)	820
BspT104I	TTCGAA	1 cut(s)	796
BspT107I	GGYRCC	2 cut(s)	49, 505
BsrDI	GCAATG	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	738
BsrI	ACTGG	1 cut(s)	1057
BssECI	CCNNGG	3 cut(s)	11, 406, 789
BssMI	GATC	2 cut(s)	812, 1114
Bst2UI	CCWGG	3 cut(s)	116, 408, 843
Bst4CI	ACNGT	1 cut(s)	738
Bst6I	CTCTTC	3 cut(s)	489, 558, 595
BstAUI	TGTACA	1 cut(s)	738
BstBI	TTCGAA	1 cut(s)	796
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	5 cut(s)	137, 401, 428, 729, 1032
BstF5I	GGATG	2 cut(s)	355, 1018
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	1079
BstHHI	GCGC	1 cut(s)	1078
BstKTI	GATC	2 cut(s)	815, 1117
BstMAI	GTCTC	4 cut(s)	491, 539, 962, 1068
BstMBI	GATC	2 cut(s)	812, 1114
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 402, 1027
BstNI	CCWGG	3 cut(s)	116, 408, 843
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	5 cut(s)	114, 406, 788, 789, 841
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	1005
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	589
BstV2I	GAAGAC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	812
BstYI	RGATCY	1 cut(s)	812
BsuI	GTATCC	1 cut(s)	1042
BsuRI	GGCC	1 cut(s)	1030
BtrI	CACGTC	1 cut(s)	386
BtsCI	GGATG	2 cut(s)	355, 1018
Cac8I	GCNNGC	1 cut(s)	273
CaiI	CAGNNNCTG	1 cut(s)	136
CfoI	GCGC	1 cut(s)	1078
Cfr9I	CCCGGG	1 cut(s)	789
Csp6I	GTAC	2 cut(s)	377, 739
CviAII	CATG	7 cut(s)	71, 598, 664, 766, 771, 860, 1006
CviQI	GTAC	2 cut(s)	377, 739
DdeI	CTNAG	5 cut(s)	137, 401, 428, 729, 1032
DpnI	GATC	2 cut(s)	814, 1116
DpnII	GATC	2 cut(s)	812, 1114
Eam1104I	CTCTTC	3 cut(s)	489, 558, 595
EarI	CTCTTC	3 cut(s)	489, 558, 595
Ecl136II	GAGCTC	1 cut(s)	1135
Eco24I	GRGCYC	1 cut(s)	1137
Eco53kI	GAGCTC	1 cut(s)	1135
Eco88I	CYCGRG	2 cut(s)	10, 789
EcoICRI	GAGCTC	1 cut(s)	1135
EcoRI	GAATTC	1 cut(s)	918
EcoRII	CCWGG	3 cut(s)	114, 406, 841
EcoT38I	GRGCYC	1 cut(s)	1137
FaeI	CATG	7 cut(s)	74, 601, 667, 769, 774, 863, 1009
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FatI	CATG	7 cut(s)	70, 597, 663, 765, 770, 859, 1005
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	2 cut(s)	342, 1025
FriOI	GRGCYC	1 cut(s)	1137
Fsp4HI	GCNGC	1 cut(s)	603
FspBI	CTAG	5 cut(s)	608, 669, 801, 1080, 1130
GlaI	GCGC	1 cut(s)	1077
GluI	GCNGC	1 cut(s)	603
HaeII	RGCGCY	1 cut(s)	1079
HaeIII	GGCC	1 cut(s)	1030
HapII	CCGG	2 cut(s)	263, 790
HhaI	GCGC	1 cut(s)	1078
Hin1II	CATG	7 cut(s)	74, 601, 667, 769, 774, 863, 1009
Hin6I	GCGC	1 cut(s)	1076
HinP1I	GCGC	1 cut(s)	1076
HinfI	GANTC	2 cut(s)	40, 119
HpaII	CCGG	2 cut(s)	263, 790
HphI	GGTGA	4 cut(s)	488, 503, 637, 863
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	4 cut(s)	336, 446, 917, 1144
Hpy188III	TCNNGA	2 cut(s)	10, 1130
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	3 cut(s)	595, 681, 935
HpyCH4III	ACNGT	1 cut(s)	738
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	4 cut(s)	247, 329, 605, 879
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 402, 1027
HpyF3I	CTNAG	5 cut(s)	137, 401, 428, 729, 1032
HpySE526I	ACGT	1 cut(s)	385
Hsp92II	CATG	7 cut(s)	74, 601, 667, 769, 774, 863, 1009
HspAI	GCGC	1 cut(s)	1076
Kzo9I	GATC	2 cut(s)	812, 1114
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	3 cut(s)	383, 479, 888
MaeI	CTAG	5 cut(s)	608, 669, 801, 1080, 1130
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	3 cut(s)	643, 884, 947
MalI	GATC	2 cut(s)	814, 1116
MboI	GATC	2 cut(s)	812, 1114
MboII	GAAGA	7 cut(s)	229, 393, 506, 573, 575, 582, 974
MflI	RGATCY	1 cut(s)	812
MhlI	GDGCHC	2 cut(s)	1005, 1137
MluCI	AATT	9 cut(s)	151, 167, 200, 330, 779, 807, 918, 1022, 1108
MmeI	TCCRAC	2 cut(s)	383, 549
MnlI	CCTC	7 cut(s)	6, 189, 246, 408, 769, 796, 933
MseI	TTAA	4 cut(s)	60, 183, 753, 1107
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	2 cut(s)	263, 790
MspR9I	CCNGG	5 cut(s)	116, 408, 790, 791, 843
MvaI	CCWGG	3 cut(s)	116, 408, 843
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	268, 402, 1027
NciI	CCSGG	2 cut(s)	790, 791
NdeII	GATC	2 cut(s)	812, 1114
NlaIII	CATG	7 cut(s)	74, 601, 667, 769, 774, 863, 1009
NlaIV	GGNNCC	3 cut(s)	51, 507, 573
NmuCI	GTSAC	1 cut(s)	643
NspI	RCATGY	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	40, 119
PkrI	GCNGC	1 cut(s)	604
PshBI	ATTAAT	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	1137
Psp6I	CCWGG	3 cut(s)	114, 406, 841
PspGI	CCWGG	3 cut(s)	114, 406, 841
PspN4I	GGNNCC	3 cut(s)	51, 507, 573
PsrI	GAACNNNNNNTAC	2 cut(s)	731, 763
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	812
RsaI	GTAC	2 cut(s)	378, 740
RsaNI	GTAC	2 cut(s)	377, 739
RseI	CAYNNNNRTG	1 cut(s)	462
SacI	GAGCTC	1 cut(s)	1137
SaqAI	TTAA	4 cut(s)	60, 183, 753, 1107
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	2 cut(s)	812, 1114
ScrFI	CCNGG	5 cut(s)	116, 408, 790, 791, 843
SduI	GDGCHC	2 cut(s)	1005, 1137
SfaNI	GCATC	3 cut(s)	383, 479, 888
SfcI	CTRYAG	1 cut(s)	549
SfuI	TTCGAA	1 cut(s)	796
SmaI	CCCGGG	1 cut(s)	791
SmiMI	CAYNNNNRTG	1 cut(s)	462
SpeI	ACTAGT	1 cut(s)	800
Sse9I	AATT	9 cut(s)	151, 167, 200, 330, 779, 807, 918, 1022, 1108
SsiI	CCGC	1 cut(s)	509
SspI	AATATT	2 cut(s)	181, 675
SspMI	CTAG	5 cut(s)	608, 669, 801, 1080, 1130
SstI	GAGCTC	1 cut(s)	1137
StyD4I	CCNGG	5 cut(s)	114, 406, 788, 789, 841
TaaI	ACNGT	1 cut(s)	738
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	2 cut(s)	685, 796
TasI	AATT	9 cut(s)	151, 167, 200, 330, 779, 807, 918, 1022, 1108
TatI	WGTACW	1 cut(s)	738
TfiI	GAWTC	2 cut(s)	40, 119
Tru1I	TTAA	4 cut(s)	60, 183, 753, 1107
Tru9I	TTAA	4 cut(s)	60, 183, 753, 1107
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	9 cut(s)	201, 226, 230, 333, 604, 642, 739, 876, 954
TspGWI	ACGGA	2 cut(s)	707, 1025
TspMI	CCCGGG	1 cut(s)	789
VspI	ATTAAT	1 cut(s)	183
XapI	RAATTY	3 cut(s)	167, 779, 918
XbaI	TCTAGA	1 cut(s)	1129
XceI	RCATGY	1 cut(s)	74
XmaI	CCCGGG	1 cut(s)	789
XspI	CTAG	5 cut(s)	608, 669, 801, 1080, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.