Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007137.1

Orthogroup ID

OG0010779

Physical Location & Seq

Genomic Coordinates Reverse (-)

61949 .. 62757

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007137.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgcttagagcattgggcttcggaagtgatgttcacttgtatgtggcatcaggtgaagtgtataaaggtgaagagacattggcaccgctgaaagcacttttcccaaacttccatacaaaggagactatagcaagtaaggaagagttggaaccattttcttccttctcttctcgcatggctgcactagatttcattgtctgtgatgaaagtgatgttttcgtcaccaacaataatggcaacatggctagaatattagctggtcgaaggagatactttgggcataaaccaacaatccgtccaaacactaagaaactgtacaagttgttcattaaccaaaataacatgacatgggaggaatttgcctcccgggttcgaactagtcaaattggatctatgggagagccaaatgagaaaaagccaggcaagggtgagttccatgaaaatccagcagactgcatctgtaacacatctaatacaaagtccaaaaatgtccgaattcctcaaagtgaaatcaatgaaggcagtaacatcagcaaggaagatgagacaagtaaggatagtggttatgcgacagatgggcacatgacggatgacgagcaattttggcctgagatggattatgtggatactggaaacaagtctctgggaaaagcgcctagtcaaagattttcgtatcagggtcttaattatgatctgccagaacttctagagctcttttcagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

241

Amino Acids

27.18

Weight (kDa)

5.27

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38390
fragaria_vesca	FvH4_2g16370
malus_domestica	MD05G1132900.v1.1 MD10G1136700.v1.1 MD10G1138000.v1.1
prunus_persica	Prupe.8G176500_v2.0.a1
pyrus_communis	pycom05g12960 pycom10g11740
rosa_chinensis	RchiOBHm_Chr6g0280121
rosa_laevigata	RLG00000013087
rosa_multiflora	Rmu_sc0007137.1_g000007 Rmu_sc0029195.1_g000001 Rmu_sc0029196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188360
rosa_rugosa	Rorug06G0130100
rosa_samantha	Rh6AG240400 Rh6BG244200 Rh6CG245800 Rh6DG236700
rosa_wichuraiana	Rw6G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	82
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	397
AcsI	RAATTY	2 cut(s)	356, 495
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	118, 425
AhlI	ACTAGT	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	418
AloI	GAACNNNNNNTCC	2 cut(s)	15, 47
AluBI	AGCT	2 cut(s)	257, 712
AluI	AGCT	2 cut(s)	257, 712
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	4 cut(s)	68, 116, 539, 645
AlwI	GGATC	1 cut(s)	397
Ama87I	CYCGRG	1 cut(s)	366
AoxI	GGCC	1 cut(s)	605
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	2 cut(s)	356, 495
AspLEI	GCGC	1 cut(s)	655
AsuC2I	CCSGG	2 cut(s)	367, 368
AsuHPI	GGTGA	4 cut(s)	65, 80, 214, 440
AsuII	TTCGAA	1 cut(s)	373
AvaI	CYCGRG	1 cut(s)	366
BaeGI	GKGCMC	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	714
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	569, 607
BciT130I	CCWGG	1 cut(s)	420
BciVI	GTATCC	1 cut(s)	619
BcnI	CCSGG	2 cut(s)	367, 368
BcoDI	GTCTC	4 cut(s)	68, 116, 539, 645
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	5 cut(s)	185, 246, 378, 657, 707
BfmI	CTRYAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	656
BfuI	GTATCC	1 cut(s)	619
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	3 cut(s)	367, 368, 420
BmeT110I	CYCGRG	1 cut(s)	366
BmiI	GGNNCC	2 cut(s)	84, 150
BmrFI	CCNGG	3 cut(s)	367, 368, 420
BmsI	GCATC	2 cut(s)	56, 465
Bpu14I	TTCGAA	1 cut(s)	373
BpuMI	CCSGG	2 cut(s)	367, 368
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 425
Bse1I	ACTGG	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	2 cut(s)	118, 425
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	634
BseSI	GKGCMC	1 cut(s)	582
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	607
BshNI	GGYRCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	714
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	118, 425
BsmAI	GTCTC	4 cut(s)	68, 116, 539, 645
BsnI	GGCC	1 cut(s)	607
BsoBI	CYCGRG	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	373
Bsp1286I	GDGCHC	2 cut(s)	582, 714
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	389, 691
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	1 cut(s)	607
BspCNI	CTCAG	1 cut(s)	601
BspLI	GGNNCC	2 cut(s)	84, 150
BspPI	GGATC	1 cut(s)	397
BspT104I	TTCGAA	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	82
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	634
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	389, 691
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	315
Bst6I	CTCTTC	3 cut(s)	66, 135, 172
BstAUI	TGTACA	1 cut(s)	315
BstBI	TTCGAA	1 cut(s)	373
BstDEI	CTNAG	3 cut(s)	5, 306, 609
BstF5I	GGATG	1 cut(s)	595
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	2 cut(s)	392, 694
BstMAI	GTCTC	4 cut(s)	68, 116, 539, 645
BstMBI	GATC	2 cut(s)	389, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	604
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	3 cut(s)	365, 366, 418
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	619
BsuRI	GGCC	1 cut(s)	607
BtsCI	GGATG	1 cut(s)	595
CfoI	GCGC	1 cut(s)	655
Cfr9I	CCCGGG	1 cut(s)	366
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	6 cut(s)	175, 241, 343, 348, 437, 583
CviJI	RGCY	8 cut(s)	18, 179, 245, 257, 403, 418, 607, 712
CviKI_1	RGCY	8 cut(s)	18, 179, 245, 257, 403, 418, 607, 712
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	3 cut(s)	5, 306, 609
DpnI	GATC	2 cut(s)	391, 693
DpnII	GATC	2 cut(s)	389, 691
Eam1104I	CTCTTC	3 cut(s)	66, 135, 172
EarI	CTCTTC	3 cut(s)	66, 135, 172
Ecl136II	GAGCTC	1 cut(s)	712
Eco24I	GRGCYC	1 cut(s)	714
Eco53kI	GAGCTC	1 cut(s)	712
Eco88I	CYCGRG	1 cut(s)	366
EcoICRI	GAGCTC	1 cut(s)	712
EcoRI	GAATTC	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	714
FaeI	CATG	6 cut(s)	178, 244, 346, 351, 440, 586
FatI	CATG	6 cut(s)	174, 240, 342, 347, 436, 582
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	5 cut(s)	185, 246, 378, 657, 707
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	1 cut(s)	607
HapII	CCGG	1 cut(s)	367
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	6 cut(s)	178, 244, 346, 351, 440, 586
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	4 cut(s)	65, 80, 214, 440
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	23, 494, 721
Hpy188III	TCNNGA	1 cut(s)	707
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	3 cut(s)	172, 258, 512
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	182, 456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	604
HpyF3I	CTNAG	3 cut(s)	5, 306, 609
Hsp92II	CATG	6 cut(s)	178, 244, 346, 351, 440, 586
HspAI	GCGC	1 cut(s)	653
Kzo9I	GATC	2 cut(s)	389, 691
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	2 cut(s)	56, 465
MaeI	CTAG	5 cut(s)	185, 246, 378, 657, 707
MaeIII	GTNAC	3 cut(s)	220, 461, 524
MalI	GATC	2 cut(s)	391, 693
MboI	GATC	2 cut(s)	389, 691
MboII	GAAGA	5 cut(s)	83, 150, 152, 159, 551
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	2 cut(s)	582, 714
MluCI	AATT	5 cut(s)	356, 384, 495, 599, 685
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	3 cut(s)	346, 373, 510
MseI	TTAA	2 cut(s)	330, 684
MslI	CAYNNNNRTG	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	3 cut(s)	367, 368, 420
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	604
NciI	CCSGG	2 cut(s)	367, 368
NdeII	GATC	2 cut(s)	389, 691
NlaIII	CATG	6 cut(s)	178, 244, 346, 351, 440, 586
NlaIV	GGNNCC	2 cut(s)	84, 150
NmuCI	GTSAC	1 cut(s)	220
NspV	TTCGAA	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	2 cut(s)	84, 150
PsrI	GAACNNNNNNTAC	2 cut(s)	308, 340
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	714
SaqAI	TTAA	2 cut(s)	330, 684
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	389, 691
ScrFI	CCNGG	3 cut(s)	367, 368, 420
SduI	GDGCHC	2 cut(s)	582, 714
SetI	ASST	4 cut(s)	55, 70, 259, 714
SfaNI	GCATC	2 cut(s)	56, 465
SfcI	CTRYAG	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	373
SmaI	CCCGGG	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	39
SpeI	ACTAGT	1 cut(s)	377
Sse9I	AATT	5 cut(s)	356, 384, 495, 599, 685
SsiI	CCGC	1 cut(s)	86
SspI	AATATT	1 cut(s)	252
SspMI	CTAG	5 cut(s)	185, 246, 378, 657, 707
SstI	GAGCTC	1 cut(s)	714
StyD4I	CCNGG	3 cut(s)	365, 366, 418
TaaI	ACNGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	262, 373
TasI	AATT	5 cut(s)	356, 384, 495, 599, 685
TatI	WGTACW	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	330, 684
Tru9I	TTAA	2 cut(s)	330, 684
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	5 cut(s)	181, 219, 316, 453, 531
TspGWI	ACGGA	2 cut(s)	284, 602
TspMI	CCCGGG	1 cut(s)	366
XapI	RAATTY	2 cut(s)	356, 495
XbaI	TCTAGA	1 cut(s)	706
XmaI	CCCGGG	1 cut(s)	366
XspI	CTAG	5 cut(s)	185, 246, 378, 657, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.