pycom10g11740

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0010779
Physical Location & Seq
Reverse (-)
15309215 .. 15311073
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1122 bp
ATGAGTGTGCATACCACTCGAGTCCCAAGGAAGTGTAATGAAAAATGTTACCAGAACCGCTTGGTGCCTGTTCTTAATAAAAAGCATGCTGTTCAGCTCACAAAATTTGATTACAGACTTTCAAATAGGTTGAATTCAGATTTACAAAAGCTGAGATGTAGAGCCAATTATCAAGCCTTGAAATTTACCAACACGATTAGCGAAATGGGTAAAAAGTTGGTTGAGAGAATGAGAATGAAAAGCAAGCATTTCATTGCCCTGCATCTGAGGTTTGAGCCTGATATGCTGGCGTTTTCTGGATGCGATTATGGTGGGGGAGAAAAGGAAAGGAAAGAACTTGGCAAACTTCGGAAAAGGTGGAAAACTTTACATGCAAGCAACCCTGACAAGGTACGAAGACATGGCAGATGCCCGCTAACTCCAGAGGAAGTTGGTCTCATGCTTAGAGCATTGGGTTTCGGAAATGATATTCACTTGTATGTGGCATCCGGTGAAGTATATGGAGGTGAAGAGACAATGGCACCACTGAAAGTACTTTTCCCAAACTTCCACACAAAAGAGACTTTATTAAGTAAGGAGGAGTTGGCACCATTTTCATCCTTCTCTTCTCGAATGGCTGCACTGGACTTCATTGTTTGTGATGAAAGTGATGTTTTCATCACCAACAACAATGGCAATATGGCTAAAATGTTAGCTGGTCGAAGGAGATACTTTGGTCACAAACCAACAATCCGTCCAAATGCTAAGAAACTGTCTCCGTTGTTCATAAATCGTAATAACATGACATGGGAAGAATTTGCATCGAGGCTTCGAACGAGTCAAATTGGATTCATGGGAGAGCCAAATGAGATAAAGCCAGGCAGGGGTGAGTTCCACGAAAACCCAGTAGCCTGCATTTGTAGTGCATCCAACACAAAGGCTAAGGAAGATTATACAAACAAGGACAGTGGTTATGCGACAGATGAGCAAGTAACTGAGGACGAGCAAGATTGGTCTGAGGCTGATTATGATGAAATTACAAATAGGTCTCTAGGGAAAGTGCTGCCTAGTGTAAGAGTTTTGGATCCAAGTCTTCTACATAAGTCCGACCAACCAGAAATCGAAGAATTCTTTTCAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

374

Amino Acids

42.75

Weight (kDa)

8.95

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 6 - 237 4.5e-71 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 64, 520, 586
AciI CCGC 2 cut(s) 58, 413
AclWI GGATC 2 cut(s) 1058, 1071
AcsI RAATTY 5 cut(s) 104, 133, 182, 794, 1106
AfaI GTAC 2 cut(s) 393, 534
AfiI CCNNNNNNNGG 2 cut(s) 388, 863
AgsI TTSAA 3 cut(s) 123, 133, 181
AjnI CCWGG 1 cut(s) 856
AluBI AGCT 3 cut(s) 97, 151, 695
AluI AGCT 3 cut(s) 97, 151, 695
Alw26I GTCTC 5 cut(s) 440, 506, 554, 759, 1032
AlwI GGATC 2 cut(s) 1058, 1071
Ama87I CYCGRG 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 617, 1042
ApoI RAATTY 5 cut(s) 104, 133, 182, 794, 1106
AsuHPI GGTGA 4 cut(s) 503, 518, 652, 878
AsuII TTCGAA 1 cut(s) 811
AvaI CYCGRG 1 cut(s) 18
BaeI ACNNNNGTAYC 2 cut(s) 700, 733
BamHI GGATCC 1 cut(s) 1063
BanI GGYRCC 3 cut(s) 64, 520, 586
BbsI GAAGAC 2 cut(s) 403, 1064
BbvI GCAGC 2 cut(s) 604, 1029
BcgI CGANNNNNNTGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 858
BcoDI GTCTC 5 cut(s) 440, 506, 554, 759, 1032
BfaI CTAG 2 cut(s) 1031, 1047
BisI GCNGC 2 cut(s) 618, 1043
BlsI GCNGC 2 cut(s) 619, 1044
BmcAI AGTACT 1 cut(s) 534
Bme1390I CCNGG 1 cut(s) 858
BmeT110I CYCGRG 1 cut(s) 18
BmiI GGNNCC 4 cut(s) 66, 522, 588, 1065
BmrFI CCNGG 1 cut(s) 858
BmrI ACTGGG 1 cut(s) 878
BmsI GCATC 6 cut(s) 271, 290, 398, 494, 809, 914
BmuI ACTGGG 1 cut(s) 878
BpiI GAAGAC 2 cut(s) 403, 1064
BpmI CTGGAG 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 921
Bpu14I TTCGAA 1 cut(s) 811
BsaI GGTCTC 2 cut(s) 440, 1032
BsaJI CCNNGG 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 488
Bsc4I CCNNNNNNNGG 2 cut(s) 388, 863
Bse1I ACTGG 2 cut(s) 627, 884
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 4 cut(s) 305, 485, 596, 905
BseLI CCNNNNNNNGG 2 cut(s) 388, 863
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 4 cut(s) 143, 257, 966, 987
BseNI ACTGG 2 cut(s) 627, 884
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 2 cut(s) 604, 1029
BsgI GTGCAG 1 cut(s) 603
BshNI GGYRCC 3 cut(s) 64, 520, 586
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 388, 863
BsmAI GTCTC 5 cut(s) 440, 506, 554, 759, 1032
BsmFI GGGAC 1 cut(s) 8
Bso31I GGTCTC 2 cut(s) 440, 1032
BsoBI CYCGRG 1 cut(s) 18
Bsp119I TTCGAA 1 cut(s) 811
Bsp143I GATC 1 cut(s) 1063
BspACI CCGC 2 cut(s) 58, 413
BspCNI CTCAG 4 cut(s) 144, 258, 967, 988
BspLI GGNNCC 4 cut(s) 66, 522, 588, 1065
BspPI GGATC 2 cut(s) 1058, 1071
BspT104I TTCGAA 1 cut(s) 811
BspT107I GGYRCC 3 cut(s) 64, 520, 586
BspTNI GGTCTC 2 cut(s) 440, 1032
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 2 cut(s) 627, 884
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 1 cut(s) 1063
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 2 cut(s) 753, 947
Bst6I CTCTTC 2 cut(s) 504, 610
BstBI TTCGAA 1 cut(s) 811
BstC8I GCNNGC 6 cut(s) 87, 245, 288, 376, 413, 892
BstDEI CTNAG 7 cut(s) 152, 266, 443, 744, 921, 975, 996
BstF5I GGATG 4 cut(s) 305, 485, 596, 905
BstKTI GATC 1 cut(s) 1066
BstMAI GTCTC 5 cut(s) 440, 506, 554, 759, 1032
BstMBI GATC 1 cut(s) 1063
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNI CCWGG 1 cut(s) 858
BstNSI RCATGY 2 cut(s) 89, 374
BstSCI CCNGG 1 cut(s) 856
BstV1I GCAGC 2 cut(s) 604, 1029
BstV2I GAAGAC 2 cut(s) 403, 1064
BstX2I RGATCY 1 cut(s) 1063
BstYI RGATCY 1 cut(s) 1063
BtsCI GGATG 4 cut(s) 305, 485, 596, 905
BtsIMutI CAGTG 3 cut(s) 524, 620, 952
Cac8I GCNNGC 6 cut(s) 87, 245, 288, 376, 413, 892
Csp6I GTAC 2 cut(s) 392, 533
CspCI CAANNNNNGTGG 2 cut(s) 928, 963
CviAII CATG 7 cut(s) 86, 371, 401, 439, 781, 786, 832
CviQI GTAC 2 cut(s) 392, 533
DdeI CTNAG 7 cut(s) 152, 266, 443, 744, 921, 975, 996
DpnI GATC 1 cut(s) 1065
DpnII GATC 1 cut(s) 1063
Eam1104I CTCTTC 2 cut(s) 504, 610
EarI CTCTTC 2 cut(s) 504, 610
Eco130I CCWWGG 1 cut(s) 26
Eco31I GGTCTC 2 cut(s) 440, 1032
Eco88I CYCGRG 1 cut(s) 18
EcoRI GAATTC 2 cut(s) 133, 1106
EcoRII CCWGG 1 cut(s) 856
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 7 cut(s) 89, 374, 404, 442, 784, 789, 835
FaqI GGGAC 1 cut(s) 8
FatI CATG 7 cut(s) 85, 370, 400, 438, 780, 785, 831
FauI CCCGC 1 cut(s) 420
Fnu4HI GCNGC 2 cut(s) 618, 1043
FokI GGATG 4 cut(s) 312, 472, 583, 892
Fsp4HI GCNGC 2 cut(s) 618, 1043
FspBI CTAG 2 cut(s) 1031, 1047
GluI GCNGC 2 cut(s) 618, 1043
GsuI CTGGAG 1 cut(s) 405
HapII CCGG 1 cut(s) 489
Hin1II CATG 7 cut(s) 89, 374, 404, 442, 784, 789, 835
HinfI GANTC 3 cut(s) 21, 817, 828
HpaII CCGG 1 cut(s) 489
HphI GGTGA 4 cut(s) 503, 518, 652, 878
Hpy188I TCNGA 7 cut(s) 139, 267, 351, 461, 997, 1087, 1117
Hpy188III TCNNGA 3 cut(s) 297, 422, 609
HpyAV CCTTC 2 cut(s) 610, 696
HpyCH4III ACNGT 2 cut(s) 753, 947
HpyCH4V TGCA 7 cut(s) 10, 262, 374, 620, 800, 894, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 7 cut(s) 152, 266, 443, 744, 921, 975, 996
Hsp92II CATG 7 cut(s) 89, 374, 404, 442, 784, 789, 835
Kzo9I GATC 1 cut(s) 1063
Lsp1109I GCAGC 2 cut(s) 604, 1029
LweI GCATC 6 cut(s) 271, 290, 398, 494, 809, 914
MaeI CTAG 2 cut(s) 1031, 1047
MaeIII GTNAC 3 cut(s) 47, 716, 970
MalI GATC 1 cut(s) 1065
MboI GATC 1 cut(s) 1063
MboII GAAGA 7 cut(s) 408, 521, 597, 803, 938, 1064, 1115
MflI RGATCY 1 cut(s) 1063
MluCI AATT 8 cut(s) 104, 133, 166, 182, 794, 822, 1014, 1106
MlyI GAGTC 2 cut(s) 30, 826
MmeI TCCRAC 2 cut(s) 933, 1110
MnlI CCTC 7 cut(s) 261, 418, 497, 571, 798, 970, 991
MseI TTAA 2 cut(s) 75, 569
MslI CAYNNNNRTG 1 cut(s) 477
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 1 cut(s) 858
MvaI CCWGG 1 cut(s) 858
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 1 cut(s) 1063
NlaIII CATG 7 cut(s) 89, 374, 404, 442, 784, 789, 835
NlaIV GGNNCC 4 cut(s) 66, 522, 588, 1065
NmuCI GTSAC 1 cut(s) 716
NspI RCATGY 2 cut(s) 89, 374
NspV TTCGAA 1 cut(s) 811
PaeI GCATGC 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 18
PfeI GAWTC 1 cut(s) 828
PkrI GCNGC 2 cut(s) 619, 1044
PleI GAGTC 2 cut(s) 29, 825
PpsI GAGTC 2 cut(s) 29, 825
Psp6I CCWGG 1 cut(s) 856
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 4 cut(s) 66, 522, 588, 1065
PspXI VCTCGAGB 1 cut(s) 18
PsuI RGATCY 1 cut(s) 1063
RsaI GTAC 2 cut(s) 393, 534
RsaNI GTAC 2 cut(s) 392, 533
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 2 cut(s) 75, 569
SatI GCNGC 2 cut(s) 618, 1043
Sau3AI GATC 1 cut(s) 1063
ScaI AGTACT 1 cut(s) 534
SchI GAGTC 2 cut(s) 30, 826
ScrFI CCNGG 1 cut(s) 858
SetI ASST 9 cut(s) 99, 131, 153, 272, 359, 393, 508, 697, 1028
SfaNI GCATC 6 cut(s) 271, 290, 398, 494, 809, 914
Sfr274I CTCGAG 1 cut(s) 18
SfuI TTCGAA 1 cut(s) 811
SlaI CTCGAG 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
SphI GCATGC 1 cut(s) 89
Sse9I AATT 8 cut(s) 104, 133, 166, 182, 794, 822, 1014, 1106
SsiI CCGC 2 cut(s) 58, 413
SspMI CTAG 2 cut(s) 1031, 1047
StyD4I CCNGG 1 cut(s) 856
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 2 cut(s) 753, 947
TaqI TCGA 6 cut(s) 19, 610, 700, 803, 811, 1101
TasI AATT 8 cut(s) 104, 133, 166, 182, 794, 822, 1014, 1106
TatI WGTACW 1 cut(s) 532
TfiI GAWTC 1 cut(s) 828
Tru1I TTAA 2 cut(s) 75, 569
Tru9I TTAA 2 cut(s) 75, 569
TscAI CASTG 3 cut(s) 531, 627, 952
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 2 cut(s) 617, 1042
Tsp45I GTSAC 1 cut(s) 716
TspGWI ACGGA 2 cut(s) 722, 747
TspRI CASTG 3 cut(s) 531, 627, 952
XapI RAATTY 5 cut(s) 104, 133, 182, 794, 1106
XceI RCATGY 2 cut(s) 89, 374
XhoI CTCGAG 1 cut(s) 18
XspI CTAG 2 cut(s) 1031, 1047
ZrmI AGTACT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.