Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013383

Physical Location & Seq

Genomic Coordinates Forward (+)

15827748 .. 15829380

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGAGGAACCCTTCAACTTCAAGCTGCTGCATTTCTCCTCTGCGTTTTATTGTGCAGCAACATTGCTGCTGCACGGGATGTAGATGAATGGAAGACTGCCACTGCAACGTATTCCAAAGAAACTGATGGGTCTATCATTACTGAAGGTGCTTGTGGTTATGGGGACCTTCACAGGATCAGCTATGGGAAGCACAGTGCTGGTCTGAGTGGAATTTTGTTCAACAGAGGGAGCACCTGTGGGGCTTGTTATGAGCTGAGATGTGTTGATCACATCTTGTGGTGTTTGCAAGGGAGCCCCTCCGTTATTCTCACTGCTACAGATTTCTGTCCTCCGAATTTCGGGCTCTCAGCAGACTATGGTGGCTGGTGCAATTTCCCCAAAGAACACTTTGAGATGTCTGAGGCAGCATTTGGTGAAATTGCAAAGAAAAAAGCTGATATTGTGCCAGTTCAATATAGGAGGGTGAAGTGTGAGAGAAATGGAGGGATAAGATTCATGGTGGGTGGGAGTTCTCACTTCTACCAGGTCCTAATCACCAATGTAGGTTTAGATGGGGAGGTTCTTGCTGTCAAAGTGAAGGGTTCAAGAACCGGGTGGATACCGCTGGCCAGGAACTGGGGGCAGAACTGGCAAAGCAATGTCAATCTTAAAGGGCAGCCTCTTTCGTTCGAGGTAACTGTAAGTAGCGGAAGAACACTCACATCTTACAATGTTGCTCCAGCAAACTGGCAGTTTGGCCAGACATTTGAAGGGAAACAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009628 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

256

Amino Acids

27.79

Weight (kDa)

8.01

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	68 - 153	1.3e-17	Lytic transglycolase
Expansin_C	PF01357	164 - 241	2e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38210
fragaria_vesca	FvH4_2g17030 FvH4_2g17030
malus_domestica	MD05G1143200.v1.1 MD10G1143000.v1.1
prunus_persica	Prupe.8G182000_v2.0.a1
pyrus_communis	pycom05g13770 pycom10g12290
rosa_chinensis	RchiOBHm_Chr6g0281211
rosa_laevigata	RLG00000012985
rosa_multiflora	Rmu_sc0027531.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187220
rosa_rugosa	Rorug06G0139700
rosa_samantha	Rh6AG251600 Rh6BG254900 Rh6CG254400 Rh6DG246200
rosa_wichuraiana	Rw6G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	618
AciI	CCGC	2 cut(s)	605, 690
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	2 cut(s)	609, 739
AcsI	RAATTY	2 cut(s)	213, 337
AcuI	CTGAAG	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	341, 618
AgsI	TTSAA	6 cut(s)	17, 23, 223, 455, 588, 752
AjnI	CCWGG	2 cut(s)	525, 611
AluBI	AGCT	4 cut(s)	26, 183, 256, 437
AluI	AGCT	4 cut(s)	26, 183, 256, 437
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	618
AoxI	GGCC	2 cut(s)	609, 739
ApeKI	GCWGC	7 cut(s)	26, 29, 57, 68, 71, 407, 658
ApoI	RAATTY	2 cut(s)	213, 337
Asp700I	GAANNNNTTC	1 cut(s)	761
AspS9I	GGNCC	2 cut(s)	166, 529
AsuC2I	CCSGG	1 cut(s)	595
AsuHPI	GGTGA	3 cut(s)	428, 478, 529
AvaII	GGWCC	2 cut(s)	166, 529
BalI	TGGCCA	2 cut(s)	611, 741
BanII	GRGCYC	2 cut(s)	299, 348
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	7 cut(s)	13, 16, 55, 58, 69, 419, 670
BccI	CCATC	2 cut(s)	122, 548
BciT130I	CCWGG	2 cut(s)	527, 613
BciVI	GTATCC	1 cut(s)	594
BclI	TGATCA	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	595
BfmI	CTRYAG	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	594
BisI	GCNGC	7 cut(s)	27, 30, 58, 69, 72, 408, 659
BlsI	GCNGC	7 cut(s)	28, 31, 59, 70, 73, 409, 660
Bme1390I	CCNGG	3 cut(s)	527, 595, 613
Bme18I	GGWCC	2 cut(s)	166, 529
BmgT120I	GGNCC	2 cut(s)	166, 529
BmiI	GGNNCC	3 cut(s)	10, 167, 296
BmrFI	CCNGG	3 cut(s)	527, 595, 613
BmrI	ACTGGG	1 cut(s)	628
BmuI	ACTGGG	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	705
BpuMI	CCSGG	1 cut(s)	595
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 618
Bse1I	ACTGG	4 cut(s)	449, 623, 635, 734
Bse3DI	GCAATG	2 cut(s)	63, 646
BseBI	CCWGG	2 cut(s)	527, 613
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	2 cut(s)	341, 618
BseMI	GCAATG	2 cut(s)	63, 646
BseMII	CTCAG	4 cut(s)	197, 248, 363, 393
BseNI	ACTGG	4 cut(s)	449, 623, 635, 734
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	7 cut(s)	13, 16, 55, 58, 69, 419, 670
BsgI	GTGCAG	2 cut(s)	57, 76
BshFI	GGCC	2 cut(s)	611, 741
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	594
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	341, 618
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	611, 741
Bsp1286I	GDGCHC	3 cut(s)	236, 299, 348
Bsp143I	GATC	2 cut(s)	177, 268
BspACI	CCGC	2 cut(s)	605, 690
BspANI	GGCC	2 cut(s)	611, 741
BspCNI	CTCAG	4 cut(s)	198, 249, 362, 394
BspLI	GGNNCC	3 cut(s)	10, 167, 296
BspPI	GGATC	1 cut(s)	185
BsrDI	GCAATG	2 cut(s)	63, 646
BsrI	ACTGG	4 cut(s)	449, 623, 635, 734
BssMI	GATC	2 cut(s)	177, 268
Bst2UI	CCWGG	2 cut(s)	527, 613
Bst4CI	ACNGT	3 cut(s)	197, 682, 762
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	4 cut(s)	206, 257, 349, 402
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	2 cut(s)	180, 271
BstMBI	GATC	2 cut(s)	177, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	631
BstNI	CCWGG	2 cut(s)	527, 613
BstSCI	CCNGG	3 cut(s)	525, 593, 611
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	7 cut(s)	13, 16, 55, 58, 69, 419, 670
BstV2I	GAAGAC	1 cut(s)	101
BstXI	CCANNNNNNTGG	1 cut(s)	729
BsuI	GTATCC	1 cut(s)	594
BsuRI	GGCC	2 cut(s)	611, 741
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	2 cut(s)	102, 312
BtsIMutI	CAGTG	3 cut(s)	102, 202, 312
Cac8I	GCNNGC	1 cut(s)	609
CaiI	CAGNNNCTG	1 cut(s)	618
Cfr13I	GGNCC	2 cut(s)	166, 529
CsiI	ACCWGGT	1 cut(s)	525
CviAII	CATG	1 cut(s)	499
DdeI	CTNAG	4 cut(s)	206, 257, 349, 402
DpnI	GATC	2 cut(s)	179, 270
DpnII	GATC	2 cut(s)	177, 268
EaeI	YGGCCR	2 cut(s)	609, 739
Eco24I	GRGCYC	2 cut(s)	299, 348
Eco47I	GGWCC	2 cut(s)	166, 529
Eco57I	CTGAAG	1 cut(s)	165
EcoO109I	RGGNCCY	2 cut(s)	166, 529
EcoRII	CCWGG	2 cut(s)	525, 611
EcoT38I	GRGCYC	2 cut(s)	299, 348
FaeI	CATG	1 cut(s)	502
FaiI	YATR	6 cut(s)	162, 186, 252, 360, 459, 500
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	498
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	7 cut(s)	27, 30, 58, 69, 72, 408, 659
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	2 cut(s)	299, 348
Fsp4HI	GCNGC	7 cut(s)	27, 30, 58, 69, 72, 408, 659
GluI	GCNGC	7 cut(s)	27, 30, 58, 69, 72, 408, 659
GsuI	CTGGAG	1 cut(s)	705
HaeIII	GGCC	2 cut(s)	611, 741
HapII	CCGG	1 cut(s)	594
Hin1II	CATG	1 cut(s)	502
HinfI	GANTC	1 cut(s)	495
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	3 cut(s)	428, 478, 529
Hpy188I	TCNGA	4 cut(s)	207, 336, 403, 767
Hpy188III	TCNNGA	1 cut(s)	588
HpyAV	CCTTC	5 cut(s)	23, 140, 179, 574, 746
HpyCH4III	ACNGT	3 cut(s)	197, 682, 762
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	7 cut(s)	32, 57, 74, 107, 289, 372, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	631
HpyF3I	CTNAG	4 cut(s)	206, 257, 349, 402
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	177, 268
LmnI	GCTCC	3 cut(s)	231, 294, 724
Lsp1109I	GCAGC	7 cut(s)	13, 16, 55, 58, 69, 419, 670
MabI	ACCWGGT	1 cut(s)	525
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	2 cut(s)	179, 270
MboI	GATC	2 cut(s)	177, 268
MboII	GAAGA	2 cut(s)	106, 705
MhlI	GDGCHC	3 cut(s)	236, 299, 348
MlsI	TGGCCA	2 cut(s)	611, 741
MluCI	AATT	4 cut(s)	213, 337, 373, 420
MluNI	TGGCCA	2 cut(s)	611, 741
Mox20I	TGGCCA	2 cut(s)	611, 741
MroXI	GAANNNNTTC	1 cut(s)	761
MscI	TGGCCA	2 cut(s)	611, 741
MseI	TTAA	1 cut(s)	651
Msp20I	TGGCCA	2 cut(s)	611, 741
MspA1I	CMGCKG	1 cut(s)	607
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	3 cut(s)	527, 595, 613
MvaI	CCWGG	2 cut(s)	527, 613
MwoI	GCNNNNNNNGC	1 cut(s)	631
NciI	CCSGG	1 cut(s)	595
NdeII	GATC	2 cut(s)	177, 268
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	3 cut(s)	10, 167, 296
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	1 cut(s)	495
PflMI	CCANNNNNTGG	1 cut(s)	618
PkrI	GCNGC	7 cut(s)	28, 31, 59, 70, 73, 409, 660
PpuMI	RGGWCCY	2 cut(s)	166, 529
Psp5II	RGGWCCY	2 cut(s)	166, 529
Psp6I	CCWGG	2 cut(s)	525, 611
PspGI	CCWGG	2 cut(s)	525, 611
PspN4I	GGNNCC	3 cut(s)	10, 167, 296
PspPI	GGNCC	2 cut(s)	166, 529
PspPPI	RGGWCCY	2 cut(s)	166, 529
PstNI	CAGNNNCTG	1 cut(s)	618
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	7 cut(s)	27, 30, 58, 69, 72, 408, 659
Sau3AI	GATC	2 cut(s)	177, 268
Sau96I	GGNCC	2 cut(s)	166, 529
ScrFI	CCNGG	3 cut(s)	527, 595, 613
SduI	GDGCHC	3 cut(s)	236, 299, 348
SexAI	ACCWGGT	1 cut(s)	525
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	2 cut(s)	166, 529
Sse9I	AATT	4 cut(s)	213, 337, 373, 420
SsiI	CCGC	2 cut(s)	605, 690
StyD4I	CCNGG	3 cut(s)	525, 593, 611
TaaI	ACNGT	3 cut(s)	197, 682, 762
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	672
TasI	AATT	4 cut(s)	213, 337, 373, 420
TfiI	GAWTC	1 cut(s)	495
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	3 cut(s)	109, 202, 319
TseI	GCWGC	7 cut(s)	26, 29, 57, 68, 71, 407, 658
TspDTI	ATGAA	2 cut(s)	102, 487
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	3 cut(s)	109, 202, 319
Van91I	CCANNNNNTGG	1 cut(s)	618
VpaK11BI	GGWCC	2 cut(s)	166, 529
XapI	RAATTY	2 cut(s)	213, 337
XmnI	GAANNNNTTC	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.