pycom10g15600

Piriformospora indica-insensitive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011930
Physical Location & Seq
Forward (+)
18855127 .. 18856524
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g15600.1

Sequence Viewer

Length: 1323 bp
ATGGCTCTGTTTCATCCATTTTCCAAACTTACCCTCCTCCTCCTCCCCCTCCTCCTCACAACCCTCCTGTCCACAGCCGTCATTTCACAACCCCAACCACTCCTCACCCCCGCCGAGCAAGACGCCGTCTACACTGTCCTTGGCTCCGTCAACCCCGACATCTCCTGGCGCTCTCTCTTCCCCGACGACCTCTGCCTCTCCGCCCCTCACGGCATCGTATGCGACTTCTTCTACGACAACGTTTCGTCCCCCGACCCGGTGGCTCACGTGACCGAGATGAATTTCGGGTACGTTTCGGACTACACCCCGAACCCGCCGTGCTCCGCCAACGCCACCCTCAGCCCGCTCCTCTTCACCTCCTTCAAGTACCTCCGCAAGCTCTTCTTCTACCACTGCTTCACCGGAACGCGCGTTTCGTTCCCCGAAATCCCCAAGAGTTTCGGGTCCGGTTTGGAGGAGCTCGTTTTTATCGACAACCCGTCTCTGGTGGGCTCCCTCAGTGGAATAATCCGTAATTTCACCGACTTGAGAAGGGTGGTTCTGACCGGAAATGGGATTTACGGGAACATCCCGGATGGCGTCGCCGACCTGGTTAACCTGGAGGAGCTGACTCTGTCTCGGAACCAACTCGGCGGCGAAATCCCCCTGAGCTTCTCGAAGCTGAAGAAGCTGAAGCTGGACCTGAGATCCAATGGGTTTAATGGTAAAATCCCAGAGAGCATGAAGAACTTGAAAACTTTGGAGCTTCTGGACCTGAGCCGCAATAATTTCACTAACACCGGGGTTCCTCTGTTTCTGGGTGAGATGCCAAAGCTGAAGCAATTAGATTTGAGTGGGAACTTGTTGGGAGGGCAGATTCCGGAAATTTGGGACAAGCTTGGGGGTATTCTGGGAATTGGGTTTTCAGAAATGGGGCTGGTTGGTGAAATTCCAGCTTCAATGGGGGTGCATTTGAAGAATCTAAGGTATTTAGGGCTTGATAACAACAAGCTTGAAGGGACAGTGCCTGAGGAGTTAGGGCTCTTGGAATCTGTGAGTGTGATTAATTTGCAGAACAATAACCTCAGTGGCAGAGTTTCATTTGGTGGTGGTAAATTTTCAGCAAAATTTGGGCAAAATTTGAAACTGGCTGGAAACCCTAATCTTTGTGCCGACGATAAGGCTTTGATCCTCTCCTCCAAGACCCAGTTGAAGGTCTGCAACAAAACCCAGAAACCCAATTCTGCCCCTCTTACTCTGGATTCTTCAGTGCAGGTTGTTGTTCTTCCTAACTCTCTGATTATTTTTGGCACATGGGTTTTGTTTGTGTTAATCTTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

441

Amino Acids

47.85

Weight (kDa)

6.01

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 170 - 277 9.6e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28560
fragaria_vesca FvH4_2g21070
malus_domestica MD10G1180100.v1.1
prunus_persica Prupe.8G220100_v2.0.a1
pyrus_communis pycom05g18060 pycom10g15600
rosa_chinensis RchiOBHm_Chr6g0287531
rosa_laevigata RLG00000012487
rosa_multiflora Rmu_sc0004974.1_g000008 Rmu_sc0007029.1_g000010
rosa_roxburghii Rroxscaffold_7G00180930 Rroxscaffold_7G00181400
rosa_rugosa Rorug06G0188700
rosa_samantha Rh6AG300200 Rh6BG305500 Rh6CG304000 Rh6CG314000 Rh6DG297400
rosa_wichuraiana Rw6G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1243
AccBSI CCGCTC 1 cut(s) 346
AccI GTMKAC 1 cut(s) 129
AccII CGCG 2 cut(s) 409, 411
AccIII TCCGGA 1 cut(s) 859
AciI CCGC 8 cut(s) 111, 201, 314, 324, 344, 373, 633, 760
AclI AACGTT 1 cut(s) 240
AclWI GGATC 2 cut(s) 681, 1162
AcsI RAATTY 6 cut(s) 280, 864, 927, 1094, 1106, 1117
AcuI CTGAAG 4 cut(s) 683, 692, 836, 1230
AcvI CACGTG 1 cut(s) 268
AcyI GRCGYC 2 cut(s) 123, 579
AfaI GTAC 2 cut(s) 290, 368
AfiI CCNNNNNNNGG 4 cut(s) 256, 484, 552, 1192
AgsI TTSAA 7 cut(s) 364, 733, 939, 955, 995, 1123, 1192
AhdI GACNNNNNGTC 1 cut(s) 478
AjnI CCWGG 3 cut(s) 164, 588, 597
Alw21I GWGCWC 2 cut(s) 323, 462
Alw26I GTCTC 2 cut(s) 486, 621
AlwI GGATC 2 cut(s) 681, 1162
AlwNI CAGNNNCTG 1 cut(s) 1007
Aor13HI TCCGGA 1 cut(s) 859
ApoI RAATTY 6 cut(s) 280, 864, 927, 1094, 1106, 1117
AseI ATTAAT 1 cut(s) 1044
AspLEI GCGC 2 cut(s) 171, 411
AspS9I GGNCC 3 cut(s) 444, 679, 751
AsuC2I CCSGG 3 cut(s) 257, 572, 781
AsuHPI GGTGA 6 cut(s) 97, 346, 391, 511, 812, 935
AvaII GGWCC 3 cut(s) 444, 679, 751
AxyI CCTNAGG 1 cut(s) 1008
BanII GRGCYC 3 cut(s) 462, 494, 1023
BbrPI CACGTG 1 cut(s) 268
Bbv12I GWGCWC 2 cut(s) 323, 462
BbvCI CCTCAGC 1 cut(s) 338
BccI CCATC 1 cut(s) 569
BceAI ACGGC 4 cut(s) 62, 110, 226, 301
BciT130I CCWGG 3 cut(s) 166, 590, 599
BcnI CCSGG 3 cut(s) 257, 572, 781
BcoDI GTCTC 2 cut(s) 486, 621
BfoI RGCGCY 1 cut(s) 172
BfuAI ACCTGC 1 cut(s) 1243
BisI GCNGC 2 cut(s) 634, 760
BlsI GCNGC 2 cut(s) 635, 761
Bme1390I CCNGG 6 cut(s) 166, 257, 572, 590, 599, 781
Bme18I GGWCC 3 cut(s) 444, 679, 751
BmeRI GACNNNNNGTC 1 cut(s) 478
BmgT120I GGNCC 3 cut(s) 444, 679, 751
BmiI GGNNCC 5 cut(s) 145, 445, 493, 623, 786
BmrFI CCNGG 6 cut(s) 166, 257, 572, 590, 599, 781
BmrI ACTGGG 1 cut(s) 1180
BmsI GCATC 2 cut(s) 222, 795
BmuI ACTGGG 1 cut(s) 1180
BpmI CTGGAG 1 cut(s) 620
Bpu10I CCTNAGC 3 cut(s) 338, 647, 755
BpuEI CTTGAG 1 cut(s) 547
BpuMI CCSGG 3 cut(s) 257, 572, 781
BsaAI YACGTR 1 cut(s) 268
BsaHI GRCGYC 2 cut(s) 123, 579
BsaJI CCNNGG 2 cut(s) 139, 780
BsaWI WCCGGW 4 cut(s) 401, 446, 545, 859
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 4 cut(s) 256, 484, 552, 1192
Bse1I ACTGG 2 cut(s) 1131, 1186
Bse21I CCTNAGG 1 cut(s) 1008
BseAI TCCGGA 1 cut(s) 859
BseBI CCWGG 3 cut(s) 166, 590, 599
BseDI CCNNGG 2 cut(s) 139, 780
BseGI GGATG 3 cut(s) 13, 567, 580
BseLI CCNNNNNNNGG 4 cut(s) 256, 484, 552, 1192
BseMII CTCAG 7 cut(s) 352, 511, 638, 674, 746, 999, 1078
BseNI ACTGG 2 cut(s) 1131, 1186
BsgI GTGCAG 1 cut(s) 1271
Bsh1236I CGCG 2 cut(s) 409, 411
BsiHKAI GWGCWC 2 cut(s) 323, 462
BsiSI CCGG 7 cut(s) 257, 402, 447, 546, 572, 780, 860
BslFI GGGAC 3 cut(s) 232, 884, 1012
BslI CCNNNNNNNGG 4 cut(s) 256, 484, 552, 1192
BsmAI GTCTC 2 cut(s) 486, 621
BsmBI CGTCTC 1 cut(s) 486
BsmFI GGGAC 3 cut(s) 232, 884, 1012
Bsp1286I GDGCHC 4 cut(s) 323, 462, 494, 1023
Bsp13I TCCGGA 1 cut(s) 859
Bsp143I GATC 2 cut(s) 686, 1167
BspACI CCGC 8 cut(s) 111, 201, 314, 324, 344, 373, 633, 760
BspCNI CTCAG 7 cut(s) 351, 510, 639, 675, 747, 1000, 1077
BspEI TCCGGA 1 cut(s) 859
BspFNI CGCG 2 cut(s) 409, 411
BspLI GGNNCC 5 cut(s) 145, 445, 493, 623, 786
BspMI ACCTGC 1 cut(s) 1243
BspPI GGATC 2 cut(s) 681, 1162
BspQI GCTCTTC 1 cut(s) 386
BsrBI CCGCTC 1 cut(s) 346
BsrI ACTGG 2 cut(s) 1131, 1186
BssECI CCNNGG 2 cut(s) 139, 780
BssMI GATC 2 cut(s) 686, 1167
BssNI GRCGYC 2 cut(s) 123, 579
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 3 cut(s) 166, 590, 599
Bst4CI ACNGT 2 cut(s) 136, 1003
Bst6I CTCTTC 3 cut(s) 182, 356, 386
BstACI GRCGYC 2 cut(s) 123, 579
BstAPI GCANNNNNTGC 1 cut(s) 219
BstBAI YACGTR 1 cut(s) 268
BstC8I GCNNGC 2 cut(s) 344, 377
BstDEI CTNAG 8 cut(s) 338, 497, 647, 683, 755, 962, 1008, 1064
BstF5I GGATG 3 cut(s) 13, 567, 580
BstFNI CGCG 2 cut(s) 409, 411
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 2 cut(s) 171, 411
BstKTI GATC 2 cut(s) 689, 1170
BstMAI GTCTC 2 cut(s) 486, 621
BstMBI GATC 2 cut(s) 686, 1167
BstMWI GCNNNNNNNGC 2 cut(s) 219, 667
BstNI CCWGG 3 cut(s) 166, 590, 599
BstSCI CCNGG 6 cut(s) 164, 255, 570, 588, 597, 779
BstUI CGCG 2 cut(s) 409, 411
BstX2I RGATCY 1 cut(s) 686
BstYI RGATCY 1 cut(s) 686
Bsu36I CCTNAGG 1 cut(s) 1008
BtsCI GGATG 3 cut(s) 13, 567, 580
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 6 cut(s) 132, 391, 505, 1008, 1072, 1254
BveI ACCTGC 1 cut(s) 1243
Cac8I GCNNGC 2 cut(s) 344, 377
CaiI CAGNNNCTG 1 cut(s) 1007
CfoI GCGC 2 cut(s) 171, 411
Cfr13I GGNCC 3 cut(s) 444, 679, 751
CseI GACGC 2 cut(s) 131, 568
CsiI ACCWGGT 1 cut(s) 588
Csp6I GTAC 2 cut(s) 289, 367
CviAII CATG 2 cut(s) 721, 1293
CviQI GTAC 2 cut(s) 289, 367
DdeI CTNAG 8 cut(s) 338, 497, 647, 683, 755, 962, 1008, 1064
DpnI GATC 2 cut(s) 688, 1169
DpnII GATC 2 cut(s) 686, 1167
DriI GACNNNNNGTC 1 cut(s) 478
Eam1104I CTCTTC 3 cut(s) 182, 356, 386
Eam1105I GACNNNNNGTC 1 cut(s) 478
EarI CTCTTC 3 cut(s) 182, 356, 386
EciI GGCGGA 2 cut(s) 190, 313
Ecl136II GAGCTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 139
Eco24I GRGCYC 3 cut(s) 462, 494, 1023
Eco47I GGWCC 3 cut(s) 444, 679, 751
Eco53kI GAGCTC 1 cut(s) 460
Eco57I CTGAAG 4 cut(s) 683, 692, 836, 1230
Eco72I CACGTG 1 cut(s) 268
Eco81I CCTNAGG 1 cut(s) 1008
EcoICRI GAGCTC 1 cut(s) 460
EcoRII CCWGG 3 cut(s) 164, 588, 597
EcoT14I CCWWGG 1 cut(s) 139
EcoT38I GRGCYC 3 cut(s) 462, 494, 1023
ErhI CCWWGG 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 486
FaeI CATG 2 cut(s) 724, 1296
FaiI YATR 3 cut(s) 220, 722, 1294
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 3 cut(s) 232, 884, 1012
FatI CATG 2 cut(s) 720, 1292
FauI CCCGC 3 cut(s) 118, 321, 351
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 634, 760
FokI GGATG 2 cut(s) 554, 587
FriOI GRGCYC 3 cut(s) 462, 494, 1023
Fsp4HI GCNGC 2 cut(s) 634, 760
GlaI GCGC 2 cut(s) 170, 410
GluI GCNGC 2 cut(s) 634, 760
GsuI CTGGAG 1 cut(s) 620
HaeII RGCGCY 1 cut(s) 172
HapII CCGG 7 cut(s) 257, 402, 447, 546, 572, 780, 860
HgaI GACGC 2 cut(s) 131, 568
HhaI GCGC 2 cut(s) 171, 411
Hin1I GRCGYC 2 cut(s) 123, 579
Hin1II CATG 2 cut(s) 724, 1296
Hin6I GCGC 2 cut(s) 169, 409
HinP1I GCGC 2 cut(s) 169, 409
HincII GTYRAC 2 cut(s) 151, 595
HindII GTYRAC 2 cut(s) 151, 595
HindIII AAGCTT 2 cut(s) 875, 989
HinfI GANTC 5 cut(s) 610, 856, 958, 1028, 1241
HpaI GTTAAC 1 cut(s) 595
HpaII CCGG 7 cut(s) 257, 402, 447, 546, 572, 780, 860
HphI GGTGA 6 cut(s) 97, 346, 391, 511, 812, 935
Hpy166II GTNNAC 4 cut(s) 72, 130, 151, 595
Hpy188I TCNGA 5 cut(s) 298, 543, 621, 907, 1278
Hpy188III TCNNGA 4 cut(s) 655, 749, 860, 1238
Hpy8I GTNNAC 4 cut(s) 72, 130, 151, 595
Hpy99I CGWCG 3 cut(s) 188, 584, 1157
HpyAV CCTTC 4 cut(s) 370, 525, 989, 1186
HpyCH4III ACNGT 2 cut(s) 136, 1003
HpyCH4IV ACGT 3 cut(s) 240, 267, 291
HpyCH4V TGCA 4 cut(s) 949, 1051, 1200, 1252
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 667
HpyF3I CTNAG 8 cut(s) 338, 497, 647, 683, 755, 962, 1008, 1064
HpySE526I ACGT 3 cut(s) 240, 267, 291
Hsp92I GRCGYC 2 cut(s) 123, 579
Hsp92II CATG 2 cut(s) 724, 1296
HspAI GCGC 2 cut(s) 169, 409
Kpn2I TCCGGA 1 cut(s) 859
KspAI GTTAAC 1 cut(s) 595
Kzo9I GATC 2 cut(s) 686, 1167
LguI GCTCTTC 1 cut(s) 386
LmnI GCTCC 7 cut(s) 149, 326, 351, 457, 497, 604, 742
LweI GCATC 2 cut(s) 222, 795
MabI ACCWGGT 1 cut(s) 588
MaeII ACGT 3 cut(s) 240, 267, 291
MaeIII GTNAC 1 cut(s) 268
MalI GATC 2 cut(s) 688, 1169
MbiI CCGCTC 1 cut(s) 346
MboI GATC 2 cut(s) 686, 1167
MflI RGATCY 1 cut(s) 686
MhlI GDGCHC 4 cut(s) 323, 462, 494, 1023
MlyI GAGTC 1 cut(s) 604
MroI TCCGGA 1 cut(s) 859
MseI TTAA 5 cut(s) 594, 699, 1044, 1310, 1321
MspI CCGG 7 cut(s) 257, 402, 447, 546, 572, 780, 860
MspR9I CCNGG 6 cut(s) 166, 257, 572, 590, 599, 781
MvaI CCWGG 3 cut(s) 166, 590, 599
MvnI CGCG 2 cut(s) 409, 411
MwoI GCNNNNNNNGC 2 cut(s) 219, 667
NciI CCSGG 3 cut(s) 257, 572, 781
NdeII GATC 2 cut(s) 686, 1167
NlaIII CATG 2 cut(s) 724, 1296
NlaIV GGNNCC 5 cut(s) 145, 445, 493, 623, 786
NmeAIII GCCGAG 2 cut(s) 139, 609
NmuCI GTSAC 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 386
PcsI WCGNNNNNNNCGW 2 cut(s) 413, 468
PfeI GAWTC 4 cut(s) 856, 958, 1028, 1241
PflFI GACNNNGTC 2 cut(s) 125, 613
PfoI TCCNGGA 1 cut(s) 570
PkrI GCNGC 2 cut(s) 635, 761
PleI GAGTC 1 cut(s) 604
PmaCI CACGTG 1 cut(s) 268
PmlI CACGTG 1 cut(s) 268
PpsI GAGTC 1 cut(s) 604
Ppu21I YACGTR 1 cut(s) 268
PshBI ATTAAT 1 cut(s) 1044
Psp124BI GAGCTC 1 cut(s) 462
Psp1406I AACGTT 1 cut(s) 240
Psp6I CCWGG 3 cut(s) 164, 588, 597
PspCI CACGTG 1 cut(s) 268
PspGI CCWGG 3 cut(s) 164, 588, 597
PspN4I GGNNCC 5 cut(s) 145, 445, 493, 623, 786
PspPI GGNCC 3 cut(s) 444, 679, 751
PstNI CAGNNNCTG 1 cut(s) 1007
PsuI RGATCY 1 cut(s) 686
PsyI GACNNNGTC 2 cut(s) 125, 613
RsaI GTAC 2 cut(s) 290, 368
RsaNI GTAC 2 cut(s) 289, 367
SacI GAGCTC 1 cut(s) 462
SapI GCTCTTC 1 cut(s) 386
SaqAI TTAA 5 cut(s) 594, 699, 1044, 1310, 1321
SatI GCNGC 2 cut(s) 634, 760
Sau3AI GATC 2 cut(s) 686, 1167
Sau96I GGNCC 3 cut(s) 444, 679, 751
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 6 cut(s) 166, 257, 572, 590, 599, 781
SduI GDGCHC 4 cut(s) 323, 462, 494, 1023
SexAI ACCWGGT 1 cut(s) 588
SfaNI GCATC 2 cut(s) 222, 795
SinI GGWCC 3 cut(s) 444, 679, 751
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
SsiI CCGC 8 cut(s) 111, 201, 314, 324, 344, 373, 633, 760
SstI GAGCTC 1 cut(s) 462
StyD4I CCNGG 6 cut(s) 164, 255, 570, 588, 597, 779
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 2 cut(s) 136, 1003
TaiI ACGT 3 cut(s) 243, 270, 294
TaqI TCGA 2 cut(s) 471, 656
TaqII GACCGA 1 cut(s) 287
TauI GCSGC 2 cut(s) 636, 762
TfiI GAWTC 4 cut(s) 856, 958, 1028, 1241
Tru1I TTAA 5 cut(s) 594, 699, 1044, 1310, 1321
Tru9I TTAA 5 cut(s) 594, 699, 1044, 1310, 1321
TscAI CASTG 6 cut(s) 139, 398, 505, 1008, 1072, 1254
TseFI GTSAC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 3 cut(s) 293, 737, 1068
TspGWI ACGGA 2 cut(s) 136, 500
TspRI CASTG 6 cut(s) 139, 398, 505, 1008, 1072, 1254
Tth111I GACNNNGTC 2 cut(s) 125, 613
VpaK11BI GGWCC 3 cut(s) 444, 679, 751
VspI ATTAAT 1 cut(s) 1044
XapI RAATTY 6 cut(s) 280, 864, 927, 1094, 1106, 1117
XmiI GTMKAC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.