Rh6AG300200

Piriformospora indica-insensitive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011930
Physical Location & Seq
Forward (+)
49926344 .. 49928149
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG300200.1

Sequence Viewer

Length: 1044 bp
ATGGCTCAGCTCCACCCAATTCCCACATTCACCCTCCTCTTCCTCACAACCCTCCTGTCCTCTTTCGTCATTTCCCACTCCCAGCCCCTCCTCAGCCCCGCCGAGCAGGCCTCCGTCTACCGCGTCCTCGACTCCCTCAACCCCCACGTCCCCTGGCGCACCCTCTTCCCCGACGACCTCTGCTCCTACGGCCCCCACGGCGTTGTCTGCGACTTCTTCGCCAACGACACTGATCCCAGCGTCGTAACCGTCCACGTCTCCGAGCTCAGCTTCGGGTACGTCTCCGACTACACCCCCAACCCGCCCTGCTCCTCCACCGCCGTTCTCAGCCCGCTCCTCTTCTCCGCCTTCCCTTACCTCCGCAAGCTCTTCTTCTACCGCTGCTTCAACGAAACGACAGTCGTTTCGGTCCCGGATATTCCGGCGAGTTTCGGGTCGGGTCTGGAGGAGCTCGTCTTTATAGACAACCCCTCTCTTGTTTCCCCGCTCAGTGGCATTCTCCGTAATTTCACCAGCTTAAGAAGGGCAGTTCTGACCGGGAACGGGTTTTACGGCAACGTACCGGATTCTGTTGCCGAGATGGTCAACCTGGAAGAGTTGACTCTCTCCGGAAACCAACTCGGTGGAGAGATTCCGGTGAGTTTTGAAAAACTGAAGAAGCTGAAGGTTCTCGACCTGGGCGGGAACTCCTTCGCCGGAAAAGTGCCGGACTCGGTGGGGAGCCTCTCGGAGCTGTTGAAGCTTGACCTGAGCTCCAATGGGTTTTCCGGCGAAATCCCGGAGAGCCTCAAAAACTTGCGGAGGCTGGAGCTGTTGGACCTGAGCTACAACCGGTTCAACAACTCCGGCGTGCCTCTGTTCTTGTCGGAGATGACACAGCTGAGAACGGTGTCTCTGAGCGGGAATATGCTGGGAGGGCAGATTCCGGAAATATGGAGCAAGCTCGGGGGCATTTTGGGAATTGGGCTTTCTGGGATGGGACTGGTTGGGAAAATCCCAGCTTCAATGGGGGTGTATTTGAGAAATGTGAGAGATTCTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

347

Amino Acids

37.59

Weight (kDa)

5.16

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 173 - 230 5.9e-06 Leucine rich repeat
LRR_14 PF23598 188 - 299 6.9e-10 Leucine-rich repeat region
LRR_8 PF13855 196 - 254 2e-08 Leucine rich repeat
LRR_4 PF12799 196 - 229 2.3e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28560
fragaria_vesca FvH4_2g21070
malus_domestica MD10G1180100.v1.1
prunus_persica Prupe.8G220100_v2.0.a1
pyrus_communis pycom05g18060 pycom10g15600
rosa_chinensis RchiOBHm_Chr6g0287531
rosa_laevigata RLG00000012487
rosa_multiflora Rmu_sc0004974.1_g000008 Rmu_sc0007029.1_g000010
rosa_roxburghii Rroxscaffold_7G00180930 Rroxscaffold_7G00181400
rosa_rugosa Rorug06G0188700
rosa_samantha Rh6AG300200 Rh6BG305500 Rh6CG304000 Rh6CG314000 Rh6DG297400
rosa_wichuraiana Rw6G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 334, 487, 900
AccI GTMKAC 1 cut(s) 117
AccII CGCG 1 cut(s) 123
AccIII TCCGGA 2 cut(s) 608, 925
AclWI GGATC 1 cut(s) 227
AcuI CTGAAG 2 cut(s) 674, 683
AfaI GTAC 2 cut(s) 278, 561
AfiI CCNNNNNNNGG 2 cut(s) 491, 543
AflII CTTAAG 1 cut(s) 517
AgeI ACCGGT 1 cut(s) 831
AgsI TTSAA 5 cut(s) 388, 647, 739, 838, 1005
AjiI CACGTC 2 cut(s) 148, 256
AjnI CCWGG 3 cut(s) 152, 588, 675
Alw21I GWGCWC 3 cut(s) 267, 453, 755
Alw26I GTCTC 3 cut(s) 262, 286, 897
AlwI GGATC 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 944
Aor13HI TCCGGA 2 cut(s) 608, 925
AoxI GGCC 2 cut(s) 108, 190
ApeKI GCWGC 1 cut(s) 381
ArsI GACNNNNNNTTYG 4 cut(s) 384, 388, 416, 420
AsiGI ACCGGT 1 cut(s) 831
Asp700I GAANNNNTTC 1 cut(s) 689
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 3 cut(s) 191, 409, 817
AsuC2I CCSGG 3 cut(s) 413, 538, 779
AsuHPI GGTGA 3 cut(s) 22, 502, 649
AvaI CYCGRG 1 cut(s) 944
AvaII GGWCC 2 cut(s) 409, 817
BanII GRGCYC 3 cut(s) 267, 453, 755
Bbv12I GWGCWC 3 cut(s) 267, 453, 755
BbvCI CCTCAGC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 368
BccI CCATC 2 cut(s) 574, 970
BceAI ACGGC 4 cut(s) 205, 214, 305, 568
BciT130I CCWGG 3 cut(s) 154, 590, 677
BcnI CCSGG 3 cut(s) 413, 538, 779
BcoDI GTCTC 3 cut(s) 262, 286, 897
BfrI CTTAAG 1 cut(s) 517
BglI GCCNNNNNGGC 2 cut(s) 107, 198
BisI GCNGC 1 cut(s) 382
BlpI GCTNAGC 2 cut(s) 6, 266
BlsI GCNGC 1 cut(s) 383
Bme1390I CCNGG 6 cut(s) 154, 413, 538, 590, 677, 779
Bme18I GGWCC 2 cut(s) 409, 817
BmeT110I CYCGRG 1 cut(s) 944
BmgBI CACGTC 2 cut(s) 148, 256
BmgT120I GGNCC 3 cut(s) 191, 409, 817
BmiI GGNNCC 3 cut(s) 193, 411, 722
BmrFI CCNGG 6 cut(s) 154, 413, 538, 590, 677, 779
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 2 cut(s) 464, 827
Bpu10I CCTNAGC 3 cut(s) 92, 749, 821
Bpu1102I GCTNAGC 2 cut(s) 6, 266
BpuMI CCSGG 3 cut(s) 413, 538, 779
BsaJI CCNNGG 3 cut(s) 152, 196, 676
BsaWI WCCGGW 5 cut(s) 562, 608, 634, 831, 925
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 737, 767
Bsc4I CCNNNNNNNGG 2 cut(s) 491, 543
Bse118I RCCGGY 1 cut(s) 831
Bse1I ACTGG 1 cut(s) 987
BseAI TCCGGA 2 cut(s) 608, 925
BseBI CCWGG 3 cut(s) 154, 590, 677
BseDI CCNNGG 3 cut(s) 152, 196, 676
BseGI GGATG 1 cut(s) 981
BseLI CCNNNNNNNGG 2 cut(s) 491, 543
BseMII CTCAG 9 cut(s) 20, 106, 280, 340, 502, 740, 812, 872, 887
BseNI ACTGG 1 cut(s) 987
BseRI GAGGAG 5 cut(s) 26, 80, 301, 326, 461
BseXI GCAGC 1 cut(s) 368
BseYI CCCAGC 4 cut(s) 81, 236, 910, 997
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 110, 192
BshTI ACCGGT 1 cut(s) 831
BsiHKAI GWGCWC 3 cut(s) 267, 453, 755
BsiHKCI CYCGRG 1 cut(s) 944
BslFI GGGAC 3 cut(s) 134, 395, 993
BslI CCNNNNNNNGG 2 cut(s) 491, 543
BsmAI GTCTC 3 cut(s) 262, 286, 897
BsmBI CGTCTC 2 cut(s) 262, 286
BsmFI GGGAC 3 cut(s) 134, 395, 993
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 2 cut(s) 110, 192
BsoBI CYCGRG 1 cut(s) 944
Bsp1286I GDGCHC 3 cut(s) 267, 453, 755
Bsp13I TCCGGA 2 cut(s) 608, 925
Bsp143I GATC 1 cut(s) 232
Bsp1720I GCTNAGC 2 cut(s) 6, 266
BspANI GGCC 2 cut(s) 110, 192
BspCNI CTCAG 9 cut(s) 19, 105, 279, 339, 501, 741, 813, 873, 888
BspEI TCCGGA 2 cut(s) 608, 925
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 3 cut(s) 193, 411, 722
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 374
BspTI CTTAAG 1 cut(s) 517
BsrBI CCGCTC 3 cut(s) 334, 487, 900
BsrFI RCCGGY 1 cut(s) 831
BsrI ACTGG 1 cut(s) 987
BssAI RCCGGY 1 cut(s) 831
BssECI CCNNGG 3 cut(s) 152, 196, 676
BssMI GATC 1 cut(s) 232
Bst2UI CCWGG 3 cut(s) 154, 590, 677
Bst4CI ACNGT 3 cut(s) 250, 400, 889
Bst6I CTCTTC 5 cut(s) 44, 170, 344, 374, 588
BstAFI CTTAAG 1 cut(s) 517
BstC8I GCNNGC 5 cut(s) 108, 332, 365, 851, 941
BstDEI CTNAG 9 cut(s) 6, 92, 266, 326, 488, 749, 821, 881, 896
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 1 cut(s) 981
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 3 cut(s) 262, 286, 897
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 6 cut(s) 107, 189, 198, 207, 739, 916
BstNI CCWGG 3 cut(s) 154, 590, 677
BstSCI CCNGG 6 cut(s) 152, 411, 536, 588, 675, 777
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 368
BstXI CCANNNNNNTGG 1 cut(s) 623
BsuRI GGCC 2 cut(s) 110, 192
BtgI CCRYGG 1 cut(s) 196
BtrI CACGTC 2 cut(s) 148, 256
BtsCI GGATG 1 cut(s) 981
BtsIMutI CAGTG 2 cut(s) 228, 496
Cac8I GCNNGC 5 cut(s) 108, 332, 365, 851, 941
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 831
Cfr13I GGNCC 3 cut(s) 191, 409, 817
CseI GACGC 2 cut(s) 112, 229
Csp6I GTAC 2 cut(s) 277, 560
CspAI ACCGGT 1 cut(s) 831
CviQI GTAC 2 cut(s) 277, 560
DdeI CTNAG 9 cut(s) 6, 92, 266, 326, 488, 749, 821, 881, 896
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eam1104I CTCTTC 5 cut(s) 44, 170, 344, 374, 588
EarI CTCTTC 5 cut(s) 44, 170, 344, 374, 588
EciI GGCGGA 1 cut(s) 334
Ecl136II GAGCTC 3 cut(s) 265, 451, 753
Eco147I AGGCCT 1 cut(s) 110
Eco24I GRGCYC 3 cut(s) 267, 453, 755
Eco47I GGWCC 2 cut(s) 409, 817
Eco53kI GAGCTC 3 cut(s) 265, 451, 753
Eco57I CTGAAG 2 cut(s) 674, 683
Eco88I CYCGRG 1 cut(s) 944
EcoICRI GAGCTC 3 cut(s) 265, 451, 753
EcoRII CCWGG 3 cut(s) 152, 588, 675
EcoT38I GRGCYC 3 cut(s) 267, 453, 755
Esp3I CGTCTC 2 cut(s) 262, 286
FaiI YATR 3 cut(s) 461, 908, 934
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FaqI GGGAC 3 cut(s) 134, 395, 993
FauI CCCGC 6 cut(s) 106, 309, 339, 492, 674, 893
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 382
FokI GGATG 1 cut(s) 988
FriOI GRGCYC 3 cut(s) 267, 453, 755
Fsp4HI GCNGC 1 cut(s) 382
GlaI GCGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 382
GsaI CCCAGC 4 cut(s) 85, 240, 914, 1001
GsuI CTGGAG 2 cut(s) 464, 827
HaeIII GGCC 2 cut(s) 110, 192
HgaI GACGC 2 cut(s) 112, 229
HhaI GCGC 1 cut(s) 159
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HincII GTYRAC 2 cut(s) 586, 600
HindII GTYRAC 2 cut(s) 586, 600
HindIII AAGCTT 1 cut(s) 740
HinfI GANTC 7 cut(s) 131, 566, 601, 631, 710, 922, 1034
HphI GGTGA 3 cut(s) 22, 502, 649
Hpy166II GTNNAC 4 cut(s) 118, 253, 586, 600
Hpy188I TCNGA 7 cut(s) 262, 286, 534, 730, 868, 897, 1043
Hpy188III TCNNGA 4 cut(s) 443, 609, 671, 926
Hpy8I GTNNAC 4 cut(s) 118, 253, 586, 600
Hpy99I CGWCG 2 cut(s) 176, 245
HpyAV CCTTC 4 cut(s) 358, 516, 658, 700
HpyCH4III ACNGT 3 cut(s) 250, 400, 889
HpyCH4IV ACGT 4 cut(s) 147, 255, 279, 558
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 189, 198, 207, 739, 916
HpyF3I CTNAG 9 cut(s) 6, 92, 266, 326, 488, 749, 821, 881, 896
HpySE526I ACGT 4 cut(s) 147, 255, 279, 558
HspAI GCGC 1 cut(s) 157
Kpn2I TCCGGA 2 cut(s) 608, 925
Kzo9I GATC 1 cut(s) 232
LguI GCTCTTC 1 cut(s) 374
Lsp1109I GCAGC 1 cut(s) 368
MaeII ACGT 4 cut(s) 147, 255, 279, 558
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 234
MbiI CCGCTC 3 cut(s) 334, 487, 900
MboI GATC 1 cut(s) 232
MboII GAAGA 8 cut(s) 31, 157, 208, 331, 361, 364, 605, 667
MhlI GDGCHC 3 cut(s) 267, 453, 755
MluCI AATT 3 cut(s) 18, 505, 960
MlyI GAGTC 3 cut(s) 125, 595, 704
MmeI TCCRAC 3 cut(s) 309, 795, 846
MroI TCCGGA 2 cut(s) 608, 925
MroXI GAANNNNTTC 1 cut(s) 689
MseI TTAA 1 cut(s) 518
MspA1I CMGCKG 2 cut(s) 381, 880
MspCI CTTAAG 1 cut(s) 517
MspR9I CCNGG 6 cut(s) 154, 413, 538, 590, 677, 779
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 3 cut(s) 154, 590, 677
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 6 cut(s) 107, 189, 198, 207, 739, 916
NciI CCSGG 3 cut(s) 413, 538, 779
NdeII GATC 1 cut(s) 232
NlaIV GGNNCC 3 cut(s) 193, 411, 722
NmeAIII GCCGAG 2 cut(s) 127, 601
PceI AGGCCT 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 374
PctI GAATGC 1 cut(s) 495
PdmI GAANNNNTTC 1 cut(s) 689
PfeI GAWTC 4 cut(s) 566, 631, 922, 1034
PfoI TCCNGGA 2 cut(s) 411, 777
PinAI ACCGGT 1 cut(s) 831
PkrI GCNGC 1 cut(s) 383
PleI GAGTC 3 cut(s) 125, 595, 704
PpsI GAGTC 3 cut(s) 125, 595, 704
Psp124BI GAGCTC 3 cut(s) 267, 453, 755
Psp6I CCWGG 3 cut(s) 152, 588, 675
PspFI CCCAGC 4 cut(s) 81, 236, 910, 997
PspGI CCWGG 3 cut(s) 152, 588, 675
PspN4I GGNNCC 3 cut(s) 193, 411, 722
PspPI GGNCC 3 cut(s) 191, 409, 817
PsrI GAACNNNNNNTAC 2 cut(s) 533, 565
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 2 cut(s) 278, 561
RsaNI GTAC 2 cut(s) 277, 560
SacI GAGCTC 3 cut(s) 267, 453, 755
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 1 cut(s) 382
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 3 cut(s) 191, 409, 817
SchI GAGTC 3 cut(s) 125, 595, 704
ScrFI CCNGG 6 cut(s) 154, 413, 538, 590, 677, 779
SduI GDGCHC 3 cut(s) 267, 453, 755
SinI GGWCC 2 cut(s) 409, 817
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
Sse9I AATT 3 cut(s) 18, 505, 960
SseBI AGGCCT 1 cut(s) 110
SstI GAGCTC 3 cut(s) 267, 453, 755
StuI AGGCCT 1 cut(s) 110
StyD4I CCNGG 6 cut(s) 152, 411, 536, 588, 675, 777
TaaI ACNGT 3 cut(s) 250, 400, 889
TaiI ACGT 4 cut(s) 150, 258, 282, 561
TaqI TCGA 2 cut(s) 129, 672
TaqII GACCGA 1 cut(s) 397
TasI AATT 3 cut(s) 18, 505, 960
TfiI GAWTC 4 cut(s) 566, 631, 922, 1034
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 2 cut(s) 235, 496
TseI GCWGC 1 cut(s) 381
TspGWI ACGGA 2 cut(s) 103, 491
TspRI CASTG 2 cut(s) 235, 496
Vha464I CTTAAG 1 cut(s) 517
VpaK11BI GGWCC 2 cut(s) 409, 817
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.