Rw6G025880

Piriformospora indica-insensitive protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
49342830 .. 49344485
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025880.1

Sequence Viewer

Length: 1476 bp
ATGACCCAACCACTCCACAGTTCTCACCTCCACACTTGCTCTTGCTCTTTCAGAAATCAGAACAGAGAGAAACAGACCTCAATGGCTCAGCTCCACCCAATTCCCACATTCACCCTCCTCTTCCTCACAACCCTCCTGTCCTCTTTCGTTATTTCCCACTCCCAGCCCCTCCTCAGCCCCGCCGAGCAGGCCTCCGTCTACCGCGTCCTCGACTCCCTCAACCCCCACGTCCCCTGGCGCACCCTCTTCCCCGACGACCTCTGCTCCTACGGCCCCCACGGCGTCGTCTGCGACTTCTTCGCCAACGACACTGATCCCAGCGTCGTAACCGTCCACGTCTCCGAGCTCAGCTTCGGGTACGTCTCCGACTACACCCCCAACCCGCCCTGCTCCTCCACCGCCGTTCTCAGCCCGCTCCTCTTCTCCGCCTTCCCTTACCTCCGCAAGCTCTTCTTCTACCGCTGCTTCAACGAAACGACAGTCGTTTCGGTCCCTGATATTCCGGCGAGTTTCGGGTCGGGTCTGGAGGAGCTCGTCTTTATAGACAACCCCTCTCTTGTTTCCCCGCTCAGTGGCATTCTCCGTAATTTCACCAGCTTAAGAAGGGCAGTTCTGACCGGGAACGGGTTTTACGGCAACGTACCGGATTCCGTAGCCGAGATGGTCCACCTGGAAGAGTTGACTCTCTCCGGAAACCAACTCGGTGGAGAGATTCCTGTGAGTTTTGAAAAACTGAAGAAGCTGAAGGTTCTCGACCTGGGCGGGAACTCCTTCGCCGGAAAAGTGCCGGACTCGGTGGGGAGCCTGTCGGAGCTGTTGAAGCTTGACCTGAGCTCCAATGGGTTTTCCGGCGAAATCCCGGAGAGCCTCAAAAACTTGCGGAGGCTGGAGCTGTTGGACCTGAGCTACAACCGGTTCAACAACTCCGGCGTGCCTCTGTTCTTGTCGGAGATGACACAGCTGAGAACGGTGTCTCTGAGTGGGAATATGCTGGGAGGGCAGATTCCAGAGATATGGAGCAAGCTCGGGGGCATTTTGGGAATTGGGCTTTCTGGGATGGGATTGGTTGGGAAAATCCCAGCTTCAATGGGGGTGTATTTGAGAAATGTGAGGTACCTTGGGCTTGACAATAACAACCTGGAAGGGACAGTGCCTCAGGAGTTTGGTCTTTTGGAATCTGTGAATGAGATTAATTTGGAGAACAATAGCTTAAGTGGGAGGGTCTCATTTTCTTCAGCTAAATTTGGGCACAAGATGAAGTTGTATGGAAACCCACAGCTCTGTGTTGATGATAAGGGTTTAAGGTTTGCAAAGGGTTTAGGGTTTGAGGAGTTGAAGGTGTGCAGCAAACAGCAGAAACCCAATTCTGCCCATTTCACAATGGATTCTTCTTCTTCTTCAGCAGTGCAGGTTGTTGTTCCATCCATGGTTATGGTTTGTGGGTTTTTGGGTATGATTGTGCTTATGCTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

491

Amino Acids

53.49

Weight (kDa)

6.02

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 213 - 326 1.2e-10 Leucine-rich repeat region
LRR_8 PF13855 223 - 281 3e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011930)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1399
Acc65I GGTACC 1 cut(s) 1113
AccB1I GGYRCC 1 cut(s) 1113
AccBSI CCGCTC 2 cut(s) 415, 568
AccI GTMKAC 1 cut(s) 198
AccII CGCG 1 cut(s) 204
AccIII TCCGGA 1 cut(s) 689
AclWI GGATC 1 cut(s) 308
AcsI RAATTY 1 cut(s) 1241
AcuI CTGAAG 4 cut(s) 755, 764, 1218, 1383
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 3 cut(s) 359, 642, 1115
AfiI CCNNNNNNNGG 2 cut(s) 572, 624
AflII CTTAAG 2 cut(s) 598, 1210
AgeI ACCGGT 1 cut(s) 912
AgsI TTSAA 6 cut(s) 469, 728, 820, 919, 1086, 1336
AjiI CACGTC 2 cut(s) 229, 337
AjnI CCWGG 4 cut(s) 233, 669, 756, 1137
Alw21I GWGCWC 3 cut(s) 348, 534, 836
Alw26I GTCTC 4 cut(s) 343, 367, 978, 1228
AlwI GGATC 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 1025
Aor13HI TCCGGA 1 cut(s) 689
AoxI GGCC 2 cut(s) 189, 271
ApeKI GCWGC 2 cut(s) 462, 1344
ApoI RAATTY 1 cut(s) 1241
ArsI GACNNNNNNTTYG 4 cut(s) 465, 469, 497, 501
AseI ATTAAT 1 cut(s) 1191
AsiGI ACCGGT 1 cut(s) 912
Asp700I GAANNNNTTC 1 cut(s) 770
Asp718I GGTACC 1 cut(s) 1113
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 4 cut(s) 272, 490, 664, 898
AsuC2I CCSGG 2 cut(s) 619, 860
AsuHPI GGTGA 3 cut(s) 17, 103, 583
AvaI CYCGRG 1 cut(s) 1025
AvaII GGWCC 3 cut(s) 490, 664, 898
AxyI CCTNAGG 1 cut(s) 1155
BaeGI GKGCMC 1 cut(s) 1251
BanI GGYRCC 1 cut(s) 1113
BanII GRGCYC 3 cut(s) 348, 534, 836
Bbv12I GWGCWC 3 cut(s) 348, 534, 836
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 449, 1356
BccI CCATC 3 cut(s) 655, 1051, 1429
BceAI ACGGC 4 cut(s) 286, 295, 386, 649
BciT130I CCWGG 4 cut(s) 235, 671, 758, 1139
BcnI CCSGG 2 cut(s) 619, 860
BcoDI GTCTC 4 cut(s) 343, 367, 978, 1228
BfrI CTTAAG 2 cut(s) 598, 1210
BfuAI ACCTGC 1 cut(s) 1399
BglI GCCNNNNNGGC 2 cut(s) 188, 279
BisI GCNGC 2 cut(s) 463, 1345
BlpI GCTNAGC 2 cut(s) 87, 347
BlsI GCNGC 2 cut(s) 464, 1346
Bme1390I CCNGG 6 cut(s) 235, 619, 671, 758, 860, 1139
Bme18I GGWCC 3 cut(s) 490, 664, 898
BmeT110I CYCGRG 1 cut(s) 1025
BmgBI CACGTC 2 cut(s) 229, 337
BmgT120I GGNCC 4 cut(s) 272, 490, 664, 898
BmiI GGNNCC 4 cut(s) 274, 492, 803, 1115
BmrFI CCNGG 6 cut(s) 235, 619, 671, 758, 860, 1139
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 2 cut(s) 545, 908
Bpu10I CCTNAGC 3 cut(s) 173, 830, 902
Bpu1102I GCTNAGC 2 cut(s) 87, 347
BpuMI CCSGG 2 cut(s) 619, 860
BsaHI GRCGYC 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 1228
BsaJI CCNNGG 5 cut(s) 233, 277, 757, 1117, 1425
BsaWI WCCGGW 3 cut(s) 643, 689, 912
BsaXI ACNNNNNCTCC 4 cut(s) 248, 278, 818, 848
Bsc4I CCNNNNNNNGG 2 cut(s) 572, 624
Bse118I RCCGGY 1 cut(s) 912
Bse21I CCTNAGG 1 cut(s) 1155
BseAI TCCGGA 1 cut(s) 689
BseBI CCWGG 4 cut(s) 235, 671, 758, 1139
BseDI CCNNGG 5 cut(s) 233, 277, 757, 1117, 1425
BseGI GGATG 2 cut(s) 1062, 1421
BseLI CCNNNNNNNGG 2 cut(s) 572, 624
BseRI GAGGAG 6 cut(s) 107, 161, 382, 407, 542, 1343
BseSI GKGCMC 1 cut(s) 1251
BseXI GCAGC 2 cut(s) 449, 1356
BseYI CCCAGC 4 cut(s) 162, 317, 991, 1078
BsgI GTGCAG 2 cut(s) 1363, 1427
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 2 cut(s) 191, 273
BshNI GGYRCC 1 cut(s) 1113
BshTI ACCGGT 1 cut(s) 912
BsiHKAI GWGCWC 3 cut(s) 348, 534, 836
BsiHKCI CYCGRG 1 cut(s) 1025
BslFI GGGAC 3 cut(s) 215, 476, 1159
BslI CCNNNNNNNGG 2 cut(s) 572, 624
BsmAI GTCTC 4 cut(s) 343, 367, 978, 1228
BsmBI CGTCTC 2 cut(s) 343, 367
BsmFI GGGAC 3 cut(s) 215, 476, 1159
BsmI GAATGC 1 cut(s) 576
BsnI GGCC 2 cut(s) 191, 273
Bso31I GGTCTC 1 cut(s) 1228
BsoBI CYCGRG 1 cut(s) 1025
Bsp1286I GDGCHC 4 cut(s) 348, 534, 836, 1251
Bsp13I TCCGGA 1 cut(s) 689
Bsp143I GATC 1 cut(s) 313
Bsp1720I GCTNAGC 2 cut(s) 87, 347
Bsp19I CCATGG 1 cut(s) 1425
BspANI GGCC 2 cut(s) 191, 273
BspEI TCCGGA 1 cut(s) 689
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 4 cut(s) 274, 492, 803, 1115
BspMI ACCTGC 1 cut(s) 1399
BspPI GGATC 1 cut(s) 308
BspQI GCTCTTC 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 1113
BspTI CTTAAG 2 cut(s) 598, 1210
BspTNI GGTCTC 1 cut(s) 1228
BsrBI CCGCTC 2 cut(s) 415, 568
BsrFI RCCGGY 1 cut(s) 912
BssAI RCCGGY 1 cut(s) 912
BssECI CCNNGG 5 cut(s) 233, 277, 757, 1117, 1425
BssMI GATC 1 cut(s) 313
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 1117, 1425
Bst2UI CCWGG 4 cut(s) 235, 671, 758, 1139
Bst4CI ACNGT 5 cut(s) 20, 331, 481, 970, 1150
Bst6I CTCTTC 5 cut(s) 125, 251, 425, 455, 669
BstACI GRCGYC 1 cut(s) 282
BstAFI CTTAAG 2 cut(s) 598, 1210
BstC8I GCNNGC 5 cut(s) 189, 413, 446, 932, 1022
BstDSI CCRYGG 2 cut(s) 277, 1425
BstF5I GGATG 2 cut(s) 1062, 1421
BstFNI CGCG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 4 cut(s) 343, 367, 978, 1228
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 6 cut(s) 188, 270, 279, 288, 820, 997
BstNI CCWGG 4 cut(s) 235, 671, 758, 1139
BstSCI CCNGG 6 cut(s) 233, 617, 669, 756, 858, 1137
BstSLI GKGCMC 1 cut(s) 1251
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 449, 1356
BstXI CCANNNNNNTGG 3 cut(s) 704, 1014, 1432
Bsu36I CCTNAGG 1 cut(s) 1155
BsuRI GGCC 2 cut(s) 191, 273
BtgI CCRYGG 2 cut(s) 277, 1425
BtrI CACGTC 2 cut(s) 229, 337
BtsCI GGATG 2 cut(s) 1062, 1421
BtsI GCAGTG 1 cut(s) 1410
BtsIMutI CAGTG 4 cut(s) 309, 577, 1155, 1410
BveI ACCTGC 1 cut(s) 1399
Cac8I GCNNGC 5 cut(s) 189, 413, 446, 932, 1022
CfoI GCGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 912
Cfr13I GGNCC 4 cut(s) 272, 490, 664, 898
CseI GACGC 3 cut(s) 193, 271, 310
Csp6I GTAC 3 cut(s) 358, 641, 1114
CspAI ACCGGT 1 cut(s) 912
CviAII CATG 1 cut(s) 1426
CviQI GTAC 3 cut(s) 358, 641, 1114
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
Eam1104I CTCTTC 5 cut(s) 125, 251, 425, 455, 669
EarI CTCTTC 5 cut(s) 125, 251, 425, 455, 669
EciI GGCGGA 1 cut(s) 415
Ecl136II GAGCTC 3 cut(s) 346, 532, 834
Eco130I CCWWGG 2 cut(s) 1117, 1425
Eco147I AGGCCT 1 cut(s) 191
Eco24I GRGCYC 3 cut(s) 348, 534, 836
Eco31I GGTCTC 1 cut(s) 1228
Eco47I GGWCC 3 cut(s) 490, 664, 898
Eco53kI GAGCTC 3 cut(s) 346, 532, 834
Eco57I CTGAAG 4 cut(s) 755, 764, 1218, 1383
Eco81I CCTNAGG 1 cut(s) 1155
Eco88I CYCGRG 1 cut(s) 1025
EcoICRI GAGCTC 3 cut(s) 346, 532, 834
EcoRII CCWGG 4 cut(s) 233, 669, 756, 1137
EcoT14I CCWWGG 2 cut(s) 1117, 1425
EcoT38I GRGCYC 3 cut(s) 348, 534, 836
ErhI CCWWGG 2 cut(s) 1117, 1425
Esp3I CGTCTC 2 cut(s) 343, 367
FaeI CATG 1 cut(s) 1429
FaiI YATR 8 cut(s) 542, 989, 1015, 1266, 1427, 1433, 1454, 1466
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 3 cut(s) 215, 476, 1159
FatI CATG 1 cut(s) 1425
FauI CCCGC 5 cut(s) 187, 390, 420, 573, 755
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 463, 1345
FokI GGATG 2 cut(s) 1069, 1408
FriOI GRGCYC 3 cut(s) 348, 534, 836
Fsp4HI GCNGC 2 cut(s) 463, 1345
GlaI GCGC 1 cut(s) 239
GluI GCNGC 2 cut(s) 463, 1345
GsaI CCCAGC 4 cut(s) 166, 321, 995, 1082
GsuI CTGGAG 2 cut(s) 545, 908
HaeIII GGCC 2 cut(s) 191, 273
HgaI GACGC 3 cut(s) 193, 271, 310
HhaI GCGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 1 cut(s) 1429
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HincII GTYRAC 1 cut(s) 681
HindII GTYRAC 1 cut(s) 681
HindIII AAGCTT 1 cut(s) 821
HinfI GANTC 8 cut(s) 212, 647, 682, 712, 791, 1003, 1175, 1385
HphI GGTGA 3 cut(s) 17, 103, 583
Hpy166II GTNNAC 4 cut(s) 199, 334, 667, 681
Hpy188I TCNGA 8 cut(s) 53, 60, 343, 367, 615, 811, 949, 978
Hpy188III TCNNGA 5 cut(s) 524, 690, 752, 1007, 1157
Hpy8I GTNNAC 4 cut(s) 199, 334, 667, 681
Hpy99I CGWCG 3 cut(s) 257, 287, 326
HpyAV CCTTC 6 cut(s) 439, 597, 739, 781, 1136, 1330
HpyCH4III ACNGT 5 cut(s) 20, 331, 481, 970, 1150
HpyCH4IV ACGT 4 cut(s) 228, 336, 360, 639
HpyCH4V TGCA 3 cut(s) 1310, 1344, 1408
HpyF10VI GCNNNNNNNGC 6 cut(s) 188, 270, 279, 288, 820, 997
HpySE526I ACGT 4 cut(s) 228, 336, 360, 639
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 1 cut(s) 1429
HspAI GCGC 1 cut(s) 238
Kpn2I TCCGGA 1 cut(s) 689
KpnI GGTACC 1 cut(s) 1117
Kzo9I GATC 1 cut(s) 313
LguI GCTCTTC 1 cut(s) 455
Lsp1109I GCAGC 2 cut(s) 449, 1356
MaeII ACGT 4 cut(s) 228, 336, 360, 639
MaeIII GTNAC 1 cut(s) 325
MalI GATC 1 cut(s) 315
MbiI CCGCTC 2 cut(s) 415, 568
MboI GATC 1 cut(s) 313
MhlI GDGCHC 4 cut(s) 348, 534, 836, 1251
MluCI AATT 7 cut(s) 99, 586, 1041, 1192, 1241, 1363, 1471
MlyI GAGTC 3 cut(s) 206, 676, 785
MmeI TCCRAC 4 cut(s) 390, 789, 876, 927
MroI TCCGGA 1 cut(s) 689
MroXI GAANNNNTTC 1 cut(s) 770
MseI TTAA 5 cut(s) 599, 1191, 1211, 1301, 1470
MslI CAYNNNNRTG 1 cut(s) 1430
MspA1I CMGCKG 2 cut(s) 462, 961
MspCI CTTAAG 2 cut(s) 598, 1210
MspR9I CCNGG 6 cut(s) 235, 619, 671, 758, 860, 1139
Mva1269I GAATGC 1 cut(s) 576
MvaI CCWGG 4 cut(s) 235, 671, 758, 1139
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 6 cut(s) 188, 270, 279, 288, 820, 997
NciI CCSGG 2 cut(s) 619, 860
NcoI CCATGG 1 cut(s) 1425
NdeII GATC 1 cut(s) 313
NlaIII CATG 1 cut(s) 1429
NlaIV GGNNCC 4 cut(s) 274, 492, 803, 1115
NmeAIII GCCGAG 2 cut(s) 208, 682
PceI AGGCCT 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 455
PctI GAATGC 1 cut(s) 576
PdmI GAANNNNTTC 1 cut(s) 770
PfeI GAWTC 5 cut(s) 647, 712, 1003, 1175, 1385
PfoI TCCNGGA 1 cut(s) 858
PinAI ACCGGT 1 cut(s) 912
PkrI GCNGC 2 cut(s) 464, 1346
PleI GAGTC 3 cut(s) 206, 676, 785
PpsI GAGTC 3 cut(s) 206, 676, 785
PshBI ATTAAT 1 cut(s) 1191
Psp124BI GAGCTC 3 cut(s) 348, 534, 836
Psp6I CCWGG 4 cut(s) 233, 669, 756, 1137
PspFI CCCAGC 4 cut(s) 162, 317, 991, 1078
PspGI CCWGG 4 cut(s) 233, 669, 756, 1137
PspN4I GGNNCC 4 cut(s) 274, 492, 803, 1115
PspPI GGNCC 4 cut(s) 272, 490, 664, 898
PsrI GAACNNNNNNTAC 2 cut(s) 614, 646
PvuII CAGCTG 1 cut(s) 961
RsaI GTAC 3 cut(s) 359, 642, 1115
RsaNI GTAC 3 cut(s) 358, 641, 1114
RseI CAYNNNNRTG 1 cut(s) 1430
SacI GAGCTC 3 cut(s) 348, 534, 836
SapI GCTCTTC 1 cut(s) 455
SaqAI TTAA 5 cut(s) 599, 1191, 1211, 1301, 1470
SatI GCNGC 2 cut(s) 463, 1345
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 4 cut(s) 272, 490, 664, 898
SchI GAGTC 3 cut(s) 206, 676, 785
ScrFI CCNGG 6 cut(s) 235, 619, 671, 758, 860, 1139
SduI GDGCHC 4 cut(s) 348, 534, 836, 1251
SinI GGWCC 3 cut(s) 490, 664, 898
SmiMI CAYNNNNRTG 1 cut(s) 1430
SmlI CTYRAG 2 cut(s) 598, 1210
SmoI CTYRAG 2 cut(s) 598, 1210
Sse9I AATT 7 cut(s) 99, 586, 1041, 1192, 1241, 1363, 1471
SseBI AGGCCT 1 cut(s) 191
SstI GAGCTC 3 cut(s) 348, 534, 836
StuI AGGCCT 1 cut(s) 191
StyD4I CCNGG 6 cut(s) 233, 617, 669, 756, 858, 1137
StyI CCWWGG 2 cut(s) 1117, 1425
TaaI ACNGT 5 cut(s) 20, 331, 481, 970, 1150
TaiI ACGT 4 cut(s) 231, 339, 363, 642
TaqI TCGA 2 cut(s) 210, 753
TaqII GACCGA 1 cut(s) 478
TasI AATT 7 cut(s) 99, 586, 1041, 1192, 1241, 1363, 1471
TfiI GAWTC 5 cut(s) 647, 712, 1003, 1175, 1385
Tru1I TTAA 5 cut(s) 599, 1191, 1211, 1301, 1470
Tru9I TTAA 5 cut(s) 599, 1191, 1211, 1301, 1470
TscAI CASTG 4 cut(s) 316, 577, 1155, 1410
TseI GCWGC 2 cut(s) 462, 1344
TspDTI ATGAA 1 cut(s) 1271
TspGWI ACGGA 3 cut(s) 184, 572, 640
TspRI CASTG 4 cut(s) 316, 577, 1155, 1410
Vha464I CTTAAG 2 cut(s) 598, 1210
VpaK11BI GGWCC 3 cut(s) 490, 664, 898
VspI ATTAAT 1 cut(s) 1191
XapI RAATTY 1 cut(s) 1241
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.