Rorug06G0188700

Piriformospora indica-insensitive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011930
Physical Location & Seq
Forward (+)
30137801 .. 30138914
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0188700.1

Sequence Viewer

Length: 786 bp
ATGACAGGGTGGAGGGGAACTCTTGGTTATGCTGCACCAGAAGTTTGCCTGCGGTGTCCTATAACCCACAAGTGTGATGTGTACAGCTTTGGAATGCTATTATTTGAGATCATAGGTAGAAGAAGGAACCTAGACCTGAATCTGCCGGAGAGTCAAGACTGGTTTCCGATGTGGGGATGGAAGAAGTTTGAAGCTGGTGAACTAGAAGAACTAATGGTAGTATGTGGTATAGATGAAAAAGATAAAGAGGCAGCAGAGAGAATGGTAAAAGTAGCTATATGGTGTGTTCAGTATAGCTCCGAGTTGAGGCCTTTGATGAGTGTAGTGGTGGATCCTCTAATTGAAATAAAAGAAAGAACACTACTAGAAGTTCCTGGATATGAGAACCCTGTTGAATTTGGTGTTATGACTTTATTTGCATATCCTGTGGAAGAAGATTTAGGTGAGATAGTTGTAGCAACTACCCGAATAGAGACGATGCTCGGTGATACTGCTATCGCAGTGCATCCTGATGACGAAAGATATAAGCATCTTCACGGTAAACATGCAATCCATCCATTTAATGGAAGAAGGATTCCTATAATAAGTGATGAAATTCTTGTTGATCCAGAGTTTGGGACTGGTGCTGTCAAGATTACCCCTGCCCATGATCCTAATGACTTTATGGTTGGGAAGCGCCATAATCTTGAGTTTATCAACATCTTTACTGATGATGGAAAAATAAACCAGTATGGGGGAGCATTTGACAGGGATGCCACGCTTCAGAGCCCGAGAGGCTGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

261

Amino Acids

29.6

Weight (kDa)

4.92

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1_2 PF13603 179 - 239 3.9e-08 Leucyl-tRNA synthetase, editing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28560
fragaria_vesca FvH4_2g21070
malus_domestica MD10G1180100.v1.1
prunus_persica Prupe.8G220100_v2.0.a1
pyrus_communis pycom05g18060 pycom10g15600
rosa_chinensis RchiOBHm_Chr6g0287531
rosa_laevigata RLG00000012487
rosa_multiflora Rmu_sc0004974.1_g000008 Rmu_sc0007029.1_g000010
rosa_roxburghii Rroxscaffold_7G00180930 Rroxscaffold_7G00181400
rosa_rugosa Rorug06G0188700
rosa_samantha Rh6AG300200 Rh6BG305500 Rh6CG304000 Rh6CG314000 Rh6DG297400
rosa_wichuraiana Rw6G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 563, 614
AciI CCGC 1 cut(s) 52
AclWI GGATC 4 cut(s) 326, 339, 599, 644
AcsI RAATTY 2 cut(s) 395, 594
AcuI CTGAAG 1 cut(s) 746
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 5 cut(s) 173, 306, 563, 614, 733
AgsI TTSAA 3 cut(s) 191, 344, 395
AjnI CCWGG 1 cut(s) 373
AleI CACNNNNGTG 1 cut(s) 72
AluBI AGCT 4 cut(s) 87, 194, 275, 297
AluI AGCT 4 cut(s) 87, 194, 275, 297
Alw26I GTCTC 1 cut(s) 467
AlwI GGATC 4 cut(s) 326, 339, 599, 644
Ama87I CYCGRG 1 cut(s) 769
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 32, 251
ApoI RAATTY 2 cut(s) 395, 594
AspLEI GCGC 1 cut(s) 678
AsuHPI GGTGA 3 cut(s) 209, 455, 497
AvaI CYCGRG 1 cut(s) 769
BamHI GGATCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 770
BbvI GCAGC 2 cut(s) 19, 263
BccI CCATC 3 cut(s) 171, 561, 707
BciT130I CCWGG 1 cut(s) 375
BcoDI GTCTC 1 cut(s) 467
BfaI CTAG 3 cut(s) 131, 203, 365
BfoI RGCGCY 1 cut(s) 679
BglI GCCNNNNNGGC 1 cut(s) 774
BisI GCNGC 2 cut(s) 33, 252
BlsI GCNGC 2 cut(s) 34, 253
Bme1390I CCNGG 1 cut(s) 375
BmeT110I CYCGRG 1 cut(s) 769
BmiI GGNNCC 2 cut(s) 128, 333
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 4 cut(s) 468, 514, 538, 742
BplI GAGNNNNNCTC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 707
Bsc4I CCNNNNNNNGG 5 cut(s) 173, 306, 563, 614, 733
Bse1I ACTGG 3 cut(s) 164, 625, 727
BseBI CCWGG 1 cut(s) 375
BseGI GGATG 4 cut(s) 182, 505, 553, 757
BseLI CCNNNNNNNGG 5 cut(s) 173, 306, 563, 614, 733
BseNI ACTGG 3 cut(s) 164, 625, 727
BseXI GCAGC 2 cut(s) 19, 263
BsgI GTGCAG 1 cut(s) 18
BshFI GGCC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 769
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 5 cut(s) 173, 306, 563, 614, 733
BsmAI GTCTC 1 cut(s) 467
BsmBI CGTCTC 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 631
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 1 cut(s) 310
BsoBI CYCGRG 1 cut(s) 769
Bsp1286I GDGCHC 1 cut(s) 770
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 4 cut(s) 108, 331, 604, 649
BspACI CCGC 1 cut(s) 52
BspANI GGCC 1 cut(s) 310
BspLI GGNNCC 2 cut(s) 128, 333
BspPI GGATC 4 cut(s) 326, 339, 599, 644
BsrGI TGTACA 1 cut(s) 81
BsrI ACTGG 3 cut(s) 164, 625, 727
BssMI GATC 4 cut(s) 108, 331, 604, 649
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 539
BstAUI TGTACA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 50
BstF5I GGATG 4 cut(s) 182, 505, 553, 757
BstH2I RGCGCY 1 cut(s) 679
BstHHI GCGC 1 cut(s) 678
BstKTI GATC 4 cut(s) 111, 334, 607, 652
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 4 cut(s) 108, 331, 604, 649
BstMWI GCNNNNNNNGC 1 cut(s) 774
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 548
BstSCI CCNGG 1 cut(s) 373
BstV1I GCAGC 2 cut(s) 19, 263
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 1 cut(s) 310
BtsCI GGATG 4 cut(s) 182, 505, 553, 757
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 507
Cac8I GCNNGC 1 cut(s) 50
CfoI GCGC 1 cut(s) 678
Csp6I GTAC 1 cut(s) 82
CviAII CATG 2 cut(s) 545, 647
CviJI RGCY 7 cut(s) 87, 194, 275, 297, 310, 768, 777
CviKI_1 RGCY 7 cut(s) 87, 194, 275, 297, 310, 768, 777
CviQI GTAC 1 cut(s) 82
DpnI GATC 4 cut(s) 110, 333, 606, 651
DpnII GATC 4 cut(s) 108, 331, 604, 649
Eco147I AGGCCT 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 770
Eco57I CTGAAG 1 cut(s) 746
Eco88I CYCGRG 1 cut(s) 769
EcoRII CCWGG 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 770
Esp3I CGTCTC 1 cut(s) 467
FaeI CATG 2 cut(s) 548, 650
FaqI GGGAC 1 cut(s) 631
FatI CATG 2 cut(s) 544, 646
Fnu4HI GCNGC 2 cut(s) 33, 252
FokI GGATG 4 cut(s) 189, 492, 540, 764
FriOI GRGCYC 1 cut(s) 770
Fsp4HI GCNGC 2 cut(s) 33, 252
FspBI CTAG 3 cut(s) 131, 203, 365
GlaI GCGC 1 cut(s) 677
GluI GCNGC 2 cut(s) 33, 252
HaeII RGCGCY 1 cut(s) 679
HaeIII GGCC 1 cut(s) 310
HapII CCGG 1 cut(s) 146
HhaI GCGC 1 cut(s) 678
Hin1II CATG 2 cut(s) 548, 650
Hin6I GCGC 1 cut(s) 676
HinP1I GCGC 1 cut(s) 676
HinfI GANTC 3 cut(s) 139, 151, 574
HpaII CCGG 1 cut(s) 146
HphI GGTGA 3 cut(s) 209, 455, 497
Hpy166II GTNNAC 3 cut(s) 82, 200, 542
Hpy188I TCNGA 3 cut(s) 168, 301, 765
Hpy188III TCNNGA 5 cut(s) 155, 509, 608, 631, 686
Hpy8I GTNNAC 3 cut(s) 82, 200, 542
HpyAV CCTTC 2 cut(s) 117, 564
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4V TGCA 4 cut(s) 35, 419, 505, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 774
Hsp92II CATG 2 cut(s) 548, 650
HspAI GCGC 1 cut(s) 676
Kzo9I GATC 4 cut(s) 108, 331, 604, 649
LmnI GCTCC 2 cut(s) 302, 737
Lsp1109I GCAGC 2 cut(s) 19, 263
LweI GCATC 4 cut(s) 468, 514, 538, 742
MaeI CTAG 3 cut(s) 131, 203, 365
MaeIII GTNAC 1 cut(s) 779
MalI GATC 4 cut(s) 110, 333, 606, 651
MboI GATC 4 cut(s) 108, 331, 604, 649
MboII GAAGA 7 cut(s) 132, 193, 218, 443, 446, 524, 579
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 770
MluCI AATT 3 cut(s) 339, 395, 594
MlyI GAGTC 1 cut(s) 160
MnlI CCTC 5 cut(s) 6, 241, 300, 345, 767
MseI TTAA 1 cut(s) 561
MslI CAYNNNNRTG 2 cut(s) 72, 510
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 99
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 774
NdeII GATC 4 cut(s) 108, 331, 604, 649
NlaIII CATG 2 cut(s) 548, 650
NlaIV GGNNCC 2 cut(s) 128, 333
NmuCI GTSAC 1 cut(s) 779
NspI RCATGY 1 cut(s) 548
OliI CACNNNNGTG 1 cut(s) 72
PceI AGGCCT 1 cut(s) 310
PctI GAATGC 1 cut(s) 99
PfeI GAWTC 2 cut(s) 139, 574
PflMI CCANNNNNTGG 2 cut(s) 563, 614
PfoI TCCNGGA 1 cut(s) 373
PkrI GCNGC 2 cut(s) 34, 253
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 2 cut(s) 128, 333
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 2 cut(s) 72, 510
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 2 cut(s) 33, 252
Sau3AI GATC 4 cut(s) 108, 331, 604, 649
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 375
SduI GDGCHC 1 cut(s) 770
SetI ASST 8 cut(s) 89, 118, 132, 138, 196, 277, 299, 445
SfaNI GCATC 4 cut(s) 468, 514, 538, 742
SmiMI CAYNNNNRTG 2 cut(s) 72, 510
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
Sse9I AATT 3 cut(s) 339, 395, 594
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 1 cut(s) 52
SspMI CTAG 3 cut(s) 131, 203, 365
StuI AGGCCT 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 539
TasI AATT 3 cut(s) 339, 395, 594
TatI WGTACW 1 cut(s) 81
TfiI GAWTC 2 cut(s) 139, 574
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 1 cut(s) 507
TseFI GTSAC 1 cut(s) 779
TseI GCWGC 2 cut(s) 32, 251
Tsp45I GTSAC 1 cut(s) 779
TspDTI ATGAA 2 cut(s) 249, 606
TspRI CASTG 1 cut(s) 507
Van91I CCANNNNNTGG 2 cut(s) 563, 614
XapI RAATTY 2 cut(s) 395, 594
XceI RCATGY 1 cut(s) 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XspI CTAG 3 cut(s) 131, 203, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.