pycom10g15630

Pleckstrin homology domain-containing family A member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0012657
Physical Location & Seq
Reverse (-)
18865048 .. 18866179
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 615 bp
ATGGCAGGAACAGGAACTGTTTTCGCTTCTGCTCTGGAAGGGATGAACCACGTTAAATCCGACTCCAGCGAGATGCTTGCCAAGCCTTTCTTGGATGTCTGCAACCACTTGCTGCCTGTTTTAGATAAGTTTGGAGCTGCCTTCGCACCTGTGAAATCTGATATTGGTAATAACATATCGAGGTTGGATTCGAAGTATTCGTCGAGCCCGTCAGAGTTTAACCATTTGTACAGCATAATTCGAGTTGAGATTGAAGCGAAAACTGCGAAATCCTCATCTAGTTGCACGAATGCTCTACTCTGGCTAACAAGGGCTATGGATTACTTGGTGGAGCTGTTTCGCAATCTGCATGATAATCCGGACTGGCCAATGTCGAAGGCTTGTAACGAAGCGTACGGCAAGACGCTGAAGAAATGGCATAACTGGCTGGCTAGCTCAAGTTTTAGTGTTGGGATTAAGCTTGCTCCGGAGAGGAAGAAATTCATGGACATATTAGGTGGTGAAACTCCTGAATTAAACTCTGATATGGGGAAATTCTGCGCGAACTTCTCTCCGCTCCTCGAAGAGAATCATAGGTTCTTGGACTCTGTTGGATTGGACAGTTTGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

205

Amino Acids

22.58

Weight (kDa)

6.3

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 27 - 166 9.1e-46 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 556
AccII CGCG 1 cut(s) 542
AccIII TCCGGA 2 cut(s) 358, 466
AciI CCGC 1 cut(s) 554
AcoI YGGCCR 1 cut(s) 365
AcsI RAATTY 2 cut(s) 479, 533
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 2 cut(s) 230, 395
AgsI TTSAA 2 cut(s) 254, 607
AluBI AGCT 5 cut(s) 137, 334, 435, 460, 611
AluI AGCT 5 cut(s) 137, 334, 435, 460, 611
AlwNI CAGNNNCTG 1 cut(s) 17
Aor13HI TCCGGA 2 cut(s) 358, 466
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 112, 137
ApoI RAATTY 2 cut(s) 479, 533
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
Asp700I GAANNNNTTC 1 cut(s) 479
AspLEI GCGC 1 cut(s) 542
AsuHPI GGTGA 1 cut(s) 512
AsuII TTCGAA 1 cut(s) 191
AsuNHI GCTAGC 1 cut(s) 431
BalI TGGCCA 1 cut(s) 367
BanII GRGCYC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 99, 124
BceAI ACGGC 1 cut(s) 412
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BfaI CTAG 2 cut(s) 279, 432
BisI GCNGC 2 cut(s) 113, 138
BlsI GCNGC 2 cut(s) 114, 139
BmsI GCATC 1 cut(s) 63
BmtI GCTAGC 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 49
Bpu14I TTCGAA 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 421
BsaWI WCCGGW 2 cut(s) 358, 466
Bse1I ACTGG 2 cut(s) 368, 428
BseAI TCCGGA 2 cut(s) 358, 466
BseGI GGATG 2 cut(s) 48, 100
BseNI ACTGG 2 cut(s) 368, 428
BseRI GAGGAG 1 cut(s) 548
BseXI GCAGC 2 cut(s) 99, 124
Bsh1236I CGCG 1 cut(s) 542
BshFI GGCC 1 cut(s) 367
BsiSI CCGG 2 cut(s) 359, 467
BsiWI CGTACG 1 cut(s) 393
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 1 cut(s) 367
Bsp119I TTCGAA 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 209
Bsp13I TCCGGA 2 cut(s) 358, 466
Bsp1407I TGTACA 1 cut(s) 228
BspACI CCGC 1 cut(s) 554
BspANI GGCC 1 cut(s) 367
BspEI TCCGGA 2 cut(s) 358, 466
BspFNI CGCG 1 cut(s) 542
BspOI GCTAGC 1 cut(s) 435
BspT104I TTCGAA 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 556
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 2 cut(s) 368, 428
Bst4CI ACNGT 2 cut(s) 19, 602
Bst6I CTCTTC 1 cut(s) 558
BstAUI TGTACA 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 191
BstC8I GCNNGC 4 cut(s) 78, 429, 433, 462
BstF5I GGATG 2 cut(s) 48, 100
BstFNI CGCG 1 cut(s) 542
BstHHI GCGC 1 cut(s) 542
BstMWI GCNNNNNNNGC 4 cut(s) 82, 143, 263, 424
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 2 cut(s) 99, 124
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 48, 100
Cac8I GCNNGC 4 cut(s) 78, 429, 433, 462
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 542
CseI GACGC 1 cut(s) 412
Csp6I GTAC 2 cut(s) 229, 394
CviAII CATG 2 cut(s) 350, 484
CviQI GTAC 2 cut(s) 229, 394
EaeI YGGCCR 1 cut(s) 365
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco24I GRGCYC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 428
EcoT38I GRGCYC 1 cut(s) 209
FaeI CATG 2 cut(s) 353, 487
FaiI YATR 9 cut(s) 176, 236, 317, 351, 420, 485, 491, 527, 573
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 2 cut(s) 349, 483
Fnu4HI GCNGC 2 cut(s) 113, 138
FokI GGATG 2 cut(s) 55, 107
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 2 cut(s) 113, 138
FspBI CTAG 2 cut(s) 279, 432
GlaI GCGC 1 cut(s) 541
GluI GCNGC 2 cut(s) 113, 138
GsuI CTGGAG 1 cut(s) 49
HaeIII GGCC 1 cut(s) 367
HapII CCGG 2 cut(s) 359, 467
HgaI GACGC 1 cut(s) 412
HhaI GCGC 1 cut(s) 542
Hin1II CATG 2 cut(s) 353, 487
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HindIII AAGCTT 2 cut(s) 458, 609
HinfI GANTC 4 cut(s) 62, 188, 568, 584
HpaII CCGG 2 cut(s) 359, 467
HphI GGTGA 1 cut(s) 512
Hpy188I TCNGA 4 cut(s) 61, 160, 214, 523
Hpy188III TCNNGA 4 cut(s) 35, 359, 467, 509
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 3 cut(s) 32, 151, 370
HpyCH4III ACNGT 2 cut(s) 19, 602
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 102, 285, 349
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 143, 263, 424
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 2 cut(s) 353, 487
HspAI GCGC 1 cut(s) 540
Kpn2I TCCGGA 2 cut(s) 358, 466
LmnI GCTCC 4 cut(s) 134, 331, 469, 561
Lsp1109I GCAGC 2 cut(s) 99, 124
LweI GCATC 1 cut(s) 63
MaeI CTAG 2 cut(s) 279, 432
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 383
MbiI CCGCTC 1 cut(s) 556
MboII GAAGA 3 cut(s) 421, 487, 575
MhlI GDGCHC 1 cut(s) 209
MlsI TGGCCA 1 cut(s) 367
MluCI AATT 4 cut(s) 237, 479, 512, 533
MluNI TGGCCA 1 cut(s) 367
MlyI GAGTC 2 cut(s) 56, 578
MmeI TCCRAC 3 cut(s) 84, 165, 571
MnlI CCTC 4 cut(s) 174, 283, 465, 569
Mox20I TGGCCA 1 cut(s) 367
MroI TCCGGA 2 cut(s) 358, 466
MroXI GAANNNNTTC 1 cut(s) 479
MscI TGGCCA 1 cut(s) 367
MseI TTAA 4 cut(s) 54, 219, 456, 515
Msp20I TGGCCA 1 cut(s) 367
MspI CCGG 2 cut(s) 359, 467
Mva1269I GAATGC 1 cut(s) 295
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 4 cut(s) 82, 143, 263, 424
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 2 cut(s) 353, 487
NspV TTCGAA 1 cut(s) 191
PcsI WCGNNNNNNNCGW 3 cut(s) 57, 197, 206
PctI GAATGC 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 2 cut(s) 188, 568
Pfl23II CGTACG 1 cut(s) 393
PkrI GCNGC 2 cut(s) 114, 139
PleI GAGTC 2 cut(s) 56, 578
PpsI GAGTC 2 cut(s) 56, 578
PspLI CGTACG 1 cut(s) 393
PstNI CAGNNNCTG 1 cut(s) 17
RsaI GTAC 2 cut(s) 230, 395
RsaNI GTAC 2 cut(s) 229, 394
SaqAI TTAA 4 cut(s) 54, 219, 456, 515
SatI GCNGC 2 cut(s) 113, 138
SchI GAGTC 2 cut(s) 56, 578
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 1 cut(s) 63
SfuI TTCGAA 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 4 cut(s) 237, 479, 512, 533
SsiI CCGC 1 cut(s) 554
SspMI CTAG 2 cut(s) 279, 432
TaaI ACNGT 2 cut(s) 19, 602
TaiI ACGT 1 cut(s) 54
TaqI TCGA 6 cut(s) 179, 191, 203, 241, 374, 561
TasI AATT 4 cut(s) 237, 479, 512, 533
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 2 cut(s) 188, 568
Tru1I TTAA 4 cut(s) 54, 219, 456, 515
Tru9I TTAA 4 cut(s) 54, 219, 456, 515
TseI GCWGC 2 cut(s) 112, 137
TspDTI ATGAA 2 cut(s) 59, 472
XapI RAATTY 2 cut(s) 479, 533
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 2 cut(s) 279, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.