pycom10g15920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014610
Physical Location & Seq
Forward (+)
19084389 .. 19084940
552 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 552 bp
ATGTCCTGCTTGAGATTGAGGCTTCCACCAGCCAGAAGGGCCTGGAAGAGCTTCACCTCCAAACTACAGAGAAAACTCCACAAGCCTAAAGGCATCGCGAAACCCGGAAAAAATCGTGTTAAGGCCATTACTGCCGCCGCTTCATCTTCTGCTTCTACTTTTGCTTTTTCTTCTGTTGGACGGAAACCCTACAAGTTTCTCCAGGTGGGTTTTAAACTCAAGGGGCGTCGCTACAAGCACCGCCAGCTTCTTCAGAACCGTGGTAGTGATGCGCATGTCTACGTTGACAAGCTTTTTAAAGAGCCTGCTGTGACTGAGCTGGTGAGGAGTTCTGAGCCTCCGGTAGCGAAGTGCAAGCAAGCTACCACTGCCGCCGCGGCTGCTGAAGGTGGGGCTAAGAGAGGATGTTCTGCGACGGCGGATGATATGTGGGAGTCATTGGGATTTGCTTCCCCAATGATGCATGGGATTGATGAAAGAGCTGAGGAGTTCATAGCCAAGTTTAGAAGGGAAATGGAGGTTCAGGAGAGGTTGGCACGTGATCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

184

Amino Acids

20.43

Weight (kDa)

10.39

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 157 - 175 4.7e-06 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20500
fragaria_vesca FvH4_2g21490
malus_domestica MD05G1197200.v1.1
prunus_persica Prupe.8G223700_v2.0.a1
pyrus_communis pycom05g18430 pycom10g15920
rosa_chinensis RchiOBHm_Chr6g0288121
rosa_laevigata RLG00000012436
rosa_multiflora Rmu_sc0001851.1_g000029 Rmu_sc0010766.1_g000005
rosa_roxburghii Rroxscaffold_7G00180480
rosa_rugosa Rorug06G0194400.1
rosa_samantha Rh6AG304600 Rh6BG310600 Rh6CG318700 Rh6DG303600
rosa_wichuraiana Rw6G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 273
AccI GTMKAC 1 cut(s) 279
AccII CGCG 2 cut(s) 98, 377
AciI CCGC 7 cut(s) 135, 138, 241, 372, 375, 377, 419
AcuI CTGAAG 2 cut(s) 236, 405
AcvI CACGTG 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 226
AjnI CCWGG 2 cut(s) 41, 201
AluBI AGCT 6 cut(s) 51, 247, 292, 319, 362, 482
AluI AGCT 6 cut(s) 51, 247, 292, 319, 362, 482
AoxI GGCC 2 cut(s) 39, 123
ApeKI GCWGC 1 cut(s) 380
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 46, 334
BbrPI CACGTG 1 cut(s) 539
BbvCI CCTCAGC 1 cut(s) 483
BbvI GCAGC 1 cut(s) 367
BceAI ACGGC 1 cut(s) 432
BciT130I CCWGG 2 cut(s) 43, 203
BclI TGATCA 1 cut(s) 541
BcnI CCSGG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 65
BglI GCCNNNNNGGC 2 cut(s) 38, 377
BisI GCNGC 6 cut(s) 135, 138, 372, 375, 378, 381
BlsI GCNGC 6 cut(s) 136, 139, 373, 376, 379, 382
Bme1390I CCNGG 3 cut(s) 43, 105, 203
BmgT120I GGNCC 1 cut(s) 39
BmrFI CCNGG 3 cut(s) 43, 105, 203
BmsI GCATC 3 cut(s) 102, 259, 450
BpmI CTGGAG 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 483
BpuEI CTTGAG 2 cut(s) 31, 203
BpuMI CCSGG 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 539
BsaHI GRCGYC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 259, 375
BsaWI WCCGGW 1 cut(s) 340
BseBI CCWGG 2 cut(s) 43, 203
BseDI CCNNGG 2 cut(s) 259, 375
BseGI GGATG 2 cut(s) 410, 427
BseMII CTCAG 3 cut(s) 306, 324, 474
BseRI GAGGAG 2 cut(s) 340, 500
BseXI GCAGC 1 cut(s) 367
Bsh1236I CGCG 2 cut(s) 98, 377
BshFI GGCC 2 cut(s) 41, 125
BsiSI CCGG 2 cut(s) 105, 341
BsnI GGCC 2 cut(s) 41, 125
Bsp143I GATC 1 cut(s) 541
Bsp68I TCGCGA 1 cut(s) 98
BspACI CCGC 7 cut(s) 135, 138, 241, 372, 375, 377, 419
BspANI GGCC 2 cut(s) 41, 125
BspCNI CTCAG 3 cut(s) 307, 325, 475
BspFNI CGCG 2 cut(s) 98, 377
BspQI GCTCTTC 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 259, 375
BssMI GATC 1 cut(s) 541
BssNI GRCGYC 1 cut(s) 226
Bst2UI CCWGG 2 cut(s) 43, 203
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 226
BstBAI YACGTR 1 cut(s) 539
BstC8I GCNNGC 4 cut(s) 245, 306, 356, 360
BstDEI CTNAG 4 cut(s) 315, 333, 396, 483
BstDSI CCRYGG 2 cut(s) 259, 375
BstF5I GGATG 2 cut(s) 410, 427
BstFNI CGCG 2 cut(s) 98, 377
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 1 cut(s) 544
BstMBI GATC 1 cut(s) 541
BstMWI GCNNNNNNNGC 6 cut(s) 38, 131, 244, 368, 377, 380
BstNI CCWGG 2 cut(s) 43, 203
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 41, 103, 201
BstSFI CTRYAG 1 cut(s) 65
BstUI CGCG 2 cut(s) 98, 377
BstV1I GCAGC 1 cut(s) 367
BsuRI GGCC 2 cut(s) 41, 125
BtgI CCRYGG 2 cut(s) 259, 375
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 2 cut(s) 410, 427
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 1 cut(s) 366
BtuMI TCGCGA 1 cut(s) 98
Cac8I GCNNGC 4 cut(s) 245, 306, 356, 360
CfoI GCGC 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 39
Cfr42I CCGCGG 1 cut(s) 378
CseI GACGC 1 cut(s) 215
CviAII CATG 2 cut(s) 275, 464
DdeI CTNAG 4 cut(s) 315, 333, 396, 483
DpnI GATC 1 cut(s) 543
DpnII GATC 1 cut(s) 541
DraI TTTAAA 2 cut(s) 214, 298
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 434
Eco57I CTGAAG 2 cut(s) 236, 405
Eco72I CACGTG 1 cut(s) 539
EcoO109I RGGNCCY 1 cut(s) 39
EcoRII CCWGG 2 cut(s) 41, 201
EcoT22I ATGCAT 1 cut(s) 465
FaeI CATG 2 cut(s) 278, 467
FaiI YATR 4 cut(s) 276, 428, 465, 494
FatI CATG 2 cut(s) 274, 463
FbaI TGATCA 1 cut(s) 541
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 6 cut(s) 135, 138, 372, 375, 378, 381
FokI GGATG 2 cut(s) 417, 434
Fsp4HI GCNGC 6 cut(s) 135, 138, 372, 375, 378, 381
FspAI RTGCGCAY 1 cut(s) 273
FspI TGCGCA 1 cut(s) 273
GlaI GCGC 1 cut(s) 273
GluI GCNGC 6 cut(s) 135, 138, 372, 375, 378, 381
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 2 cut(s) 41, 125
HapII CCGG 2 cut(s) 105, 341
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 226
Hin1II CATG 2 cut(s) 278, 467
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 1 cut(s) 434
HpaII CCGG 2 cut(s) 105, 341
HphI GGTGA 2 cut(s) 46, 334
Hpy166II GTNNAC 2 cut(s) 280, 286
Hpy188I TCNGA 2 cut(s) 255, 334
Hpy188III TCNNGA 2 cut(s) 97, 524
Hpy8I GTNNAC 2 cut(s) 280, 286
Hpy99I CGWCG 2 cut(s) 231, 418
HpyAV CCTTC 3 cut(s) 30, 380, 501
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 2 cut(s) 282, 538
HpyCH4V TGCA 2 cut(s) 354, 463
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 131, 244, 368, 377, 380
HpyF3I CTNAG 4 cut(s) 315, 333, 396, 483
HpySE526I ACGT 2 cut(s) 282, 538
Hsp92I GRCGYC 1 cut(s) 226
Hsp92II CATG 2 cut(s) 278, 467
HspAI GCGC 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 541
KspI CCGCGG 1 cut(s) 378
Kzo9I GATC 1 cut(s) 541
LguI GCTCTTC 1 cut(s) 41
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 3 cut(s) 102, 259, 450
MaeII ACGT 2 cut(s) 282, 538
MaeIII GTNAC 1 cut(s) 310
MalI GATC 1 cut(s) 543
MboI GATC 1 cut(s) 541
MboII GAAGA 4 cut(s) 58, 138, 162, 242
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 8 cut(s) 12, 67, 318, 348, 395, 478, 511, 522
Mph1103I ATGCAT 1 cut(s) 465
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 3 cut(s) 120, 213, 297
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 2 cut(s) 105, 341
MspR9I CCNGG 3 cut(s) 43, 105, 203
MvaI CCWGG 2 cut(s) 43, 203
MvnI CGCG 2 cut(s) 98, 377
MwoI GCNNNNNNNGC 6 cut(s) 38, 131, 244, 368, 377, 380
NciI CCSGG 1 cut(s) 105
NdeII GATC 1 cut(s) 541
NlaIII CATG 2 cut(s) 278, 467
NmuCI GTSAC 1 cut(s) 310
NruI TCGCGA 1 cut(s) 98
NsbI TGCGCA 1 cut(s) 273
NsiI ATGCAT 1 cut(s) 465
NspI RCATGY 1 cut(s) 278
PciSI GCTCTTC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 50
PkrI GCNGC 6 cut(s) 136, 139, 373, 376, 379, 382
PleI GAGTC 1 cut(s) 442
PmaCI CACGTG 1 cut(s) 539
PmlI CACGTG 1 cut(s) 539
PpsI GAGTC 1 cut(s) 442
Ppu21I YACGTR 1 cut(s) 539
Psp6I CCWGG 2 cut(s) 41, 201
PspCI CACGTG 1 cut(s) 539
PspGI CCWGG 2 cut(s) 41, 201
PspPI GGNCC 1 cut(s) 39
RruI TCGCGA 1 cut(s) 98
SacII CCGCGG 1 cut(s) 378
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 3 cut(s) 120, 213, 297
SatI GCNGC 6 cut(s) 135, 138, 372, 375, 378, 381
Sau3AI GATC 1 cut(s) 541
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 3 cut(s) 43, 105, 203
SfaNI GCATC 3 cut(s) 102, 259, 450
SfcI CTRYAG 1 cut(s) 65
Sfr303I CCGCGG 1 cut(s) 378
SgrBI CCGCGG 1 cut(s) 378
SmlI CTYRAG 2 cut(s) 10, 218
SmoI CTYRAG 2 cut(s) 10, 218
SsiI CCGC 7 cut(s) 135, 138, 241, 372, 375, 377, 419
StyD4I CCNGG 3 cut(s) 41, 103, 201
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 2 cut(s) 285, 541
TauI GCSGC 5 cut(s) 137, 140, 374, 377, 380
Tru1I TTAA 3 cut(s) 120, 213, 297
Tru9I TTAA 3 cut(s) 120, 213, 297
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 132, 481, 489
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 1 cut(s) 373
XceI RCATGY 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.