pycom10g15970

Chromatin modification-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0006357
Physical Location & Seq
Reverse (-)
19124380 .. 19127355
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 651 bp
ATGTTTCTATTGCACTCAAATGTGAAAATCTCTCCACCAACAAAGAGCCGGAGCATCCGCAACCCAAACCCGAAACATCGACTGCTTTCCTGGATCGAAATTTTGTGCCCTAAATTTTGGGGTTTTTGGGTTTTTCCAAATTTGGTTCCTGGGCAGCTGCTAAACGATTCCCTGATGAAAATGGATTCAGAAGCAGCGCAAAAGGCGTCGAGCAATAATCCGTCGGTAATGCTCGCTTCTCTTCTGAGTAGGAGAGCCAAGCTTCAAGATGAACTCCGAGGCATTGAAAAACAGGTCTATGATTTGGAGACTAGTTATCTGCAGGATCCAACTCAATGTGGAAATGTACTAAAAGGTTTTGAAGGGTTTCTATCGTCATCCAAGAACACTAACCTCTTGAAGCGATCTAGGAAATTTCAGCCTGAAGATAGAATGTTTTCATTATCTTCTGTTACATCACCAGCAGCTGAGGAACTTGCGGCTGCACGAGATGATGGGAGATCAGACTTTGGTCCAGGTCGGTCCAAAGGCGGTATATATGCAAATGGGCAAGGAAAACCGAAGAAGGGAAGACCTGCACCGAGGGACGTGAAGAGAATCAGGCCAAGCGAACAAGATTACGACTATGAAGATGATGCCGAGATGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NuA4

Protein Analysis

217

Amino Acids

24.27

Weight (kDa)

9.41

Isoelectric Point (pI)

63.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NuA4 PF09340 78 - 154 1.2e-26 Histone acetyltransferase subunit NuA4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 583
AciI CCGC 3 cut(s) 58, 479, 531
AclWI GGATC 3 cut(s) 101, 320, 333
AcsI RAATTY 4 cut(s) 99, 113, 139, 413
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 566
AgsI TTSAA 4 cut(s) 266, 287, 362, 400
AhlI ACTAGT 1 cut(s) 311
AjiI CACGTC 1 cut(s) 589
AjnI CCWGG 3 cut(s) 89, 148, 514
AluBI AGCT 3 cut(s) 157, 262, 467
AluI AGCT 3 cut(s) 157, 262, 467
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 3 cut(s) 101, 320, 333
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 1 cut(s) 602
ApeKI GCWGC 5 cut(s) 154, 157, 194, 464, 482
ApoI RAATTY 4 cut(s) 99, 113, 139, 413
Asp700I GAANNNNTTC 2 cut(s) 366, 436
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 512, 522
AsuHPI GGTGA 1 cut(s) 450
AvaII GGWCC 2 cut(s) 512, 522
BaeGI GKGCMC 1 cut(s) 110
BamHI GGATCC 1 cut(s) 325
BauI CACGAG 1 cut(s) 486
BbsI GAAGAC 1 cut(s) 577
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 5 cut(s) 144, 166, 206, 469, 476
BccI CCATC 1 cut(s) 488
BciT130I CCWGG 3 cut(s) 91, 150, 516
BcoDI GTCTC 1 cut(s) 302
BcuI ACTAGT 1 cut(s) 311
BfaI CTAG 2 cut(s) 312, 408
BfmI CTRYAG 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 6 cut(s) 155, 158, 195, 465, 480, 483
BlsI GCNGC 6 cut(s) 156, 159, 196, 466, 481, 484
Bme1390I CCNGG 3 cut(s) 91, 150, 516
Bme18I GGWCC 2 cut(s) 512, 522
BmgBI CACGTC 1 cut(s) 589
BmgT120I GGNCC 2 cut(s) 512, 522
BmiI GGNNCC 2 cut(s) 147, 327
BmrFI CCNGG 3 cut(s) 91, 150, 516
BmsI GCATC 2 cut(s) 63, 625
BoxI GACNNNNGTC 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 577
Bpu10I CCTNAGC 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 3 cut(s) 149, 277, 581
Bsc4I CCNNNNNNNGG 1 cut(s) 566
BseBI CCWGG 3 cut(s) 91, 150, 516
BseDI CCNNGG 3 cut(s) 149, 277, 581
BseGI GGATG 2 cut(s) 54, 377
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMII CTCAG 2 cut(s) 236, 459
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 5 cut(s) 144, 166, 206, 469, 476
BsgI GTGCAG 2 cut(s) 468, 561
BshFI GGCC 1 cut(s) 604
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 1 cut(s) 566
BsmAI GTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 1 cut(s) 604
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 4 cut(s) 93, 325, 404, 500
BspACI CCGC 3 cut(s) 58, 479, 531
BspANI GGCC 1 cut(s) 604
BspCNI CTCAG 2 cut(s) 237, 460
BspLI GGNNCC 2 cut(s) 147, 327
BspMAI CTGCAG 1 cut(s) 324
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 3 cut(s) 101, 320, 333
BssECI CCNNGG 3 cut(s) 149, 277, 581
BssMI GATC 4 cut(s) 93, 325, 404, 500
BssNI GRCGYC 1 cut(s) 206
BssSI CACGAG 1 cut(s) 486
Bst2BI CACGAG 1 cut(s) 486
Bst2UI CCWGG 3 cut(s) 91, 150, 516
Bst6I CTCTTC 2 cut(s) 246, 587
BstACI GRCGYC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 245, 468
BstF5I GGATG 2 cut(s) 54, 377
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 4 cut(s) 96, 328, 407, 503
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 4 cut(s) 93, 325, 404, 500
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 3 cut(s) 91, 150, 516
BstPAI GACNNNNGTC 1 cut(s) 510
BstSCI CCNGG 3 cut(s) 89, 148, 514
BstSFI CTRYAG 1 cut(s) 320
BstSLI GKGCMC 1 cut(s) 110
BstV1I GCAGC 5 cut(s) 144, 166, 206, 469, 476
BstV2I GAAGAC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 1 cut(s) 604
BtrI CACGTC 1 cut(s) 589
BtsCI GGATG 2 cut(s) 54, 377
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 1 cut(s) 234
CaiI CAGNNNCTG 1 cut(s) 467
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 512, 522
CseI GACGC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 347
CviJI RGCY 8 cut(s) 48, 157, 257, 262, 421, 467, 482, 604
CviKI_1 RGCY 8 cut(s) 48, 157, 257, 262, 421, 467, 482, 604
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 2 cut(s) 245, 468
DpnI GATC 4 cut(s) 95, 327, 406, 502
DpnII GATC 4 cut(s) 93, 325, 404, 500
Eam1104I CTCTTC 2 cut(s) 246, 587
EarI CTCTTC 2 cut(s) 246, 587
Eco47I GGWCC 2 cut(s) 512, 522
Eco57I CTGAAG 1 cut(s) 444
EcoRII CCWGG 3 cut(s) 89, 148, 514
FaiI YATR 6 cut(s) 300, 536, 538, 540, 627, 649
FaqI GGGAC 1 cut(s) 599
Fnu4HI GCNGC 6 cut(s) 155, 158, 195, 465, 480, 483
FokI GGATG 2 cut(s) 41, 364
Fsp4HI GCNGC 6 cut(s) 155, 158, 195, 465, 480, 483
FspBI CTAG 2 cut(s) 312, 408
GlaI GCGC 1 cut(s) 198
GluI GCNGC 6 cut(s) 155, 158, 195, 465, 480, 483
HaeIII GGCC 1 cut(s) 604
HapII CCGG 1 cut(s) 49
HgaI GACGC 1 cut(s) 195
HhaI GCGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 206
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 3 cut(s) 167, 185, 597
HpaII CCGG 1 cut(s) 49
HphI GGTGA 1 cut(s) 450
Hpy188I TCNGA 4 cut(s) 190, 246, 278, 505
Hpy188III TCNNGA 2 cut(s) 266, 397
Hpy99I CGWCG 2 cut(s) 211, 226
HpyAV CCTTC 2 cut(s) 356, 559
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 5 cut(s) 13, 322, 485, 542, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 2 cut(s) 245, 468
HpySE526I ACGT 1 cut(s) 588
Hsp92I GRCGYC 1 cut(s) 206
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 4 cut(s) 93, 325, 404, 500
LmnI GCTCC 1 cut(s) 51
Lsp1109I GCAGC 5 cut(s) 144, 166, 206, 469, 476
LweI GCATC 2 cut(s) 63, 625
MaeI CTAG 2 cut(s) 312, 408
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 1 cut(s) 451
MalI GATC 4 cut(s) 95, 327, 406, 502
MboI GATC 4 cut(s) 93, 325, 404, 500
MboII GAAGA 7 cut(s) 233, 437, 438, 574, 582, 604, 641
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 4 cut(s) 99, 113, 139, 413
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 4 cut(s) 272, 404, 463, 576
MroXI GAANNNNTTC 2 cut(s) 366, 436
MslI CAYNNNNRTG 1 cut(s) 18
MspA1I CMGCKG 2 cut(s) 157, 467
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 3 cut(s) 91, 150, 516
MvaI CCWGG 3 cut(s) 91, 150, 516
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 4 cut(s) 93, 325, 404, 500
NlaIV GGNNCC 2 cut(s) 147, 327
PdmI GAANNNNTTC 2 cut(s) 366, 436
PfeI GAWTC 3 cut(s) 167, 185, 597
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 6 cut(s) 156, 159, 196, 466, 481, 484
PshAI GACNNNNGTC 1 cut(s) 510
Psp6I CCWGG 3 cut(s) 89, 148, 514
PspGI CCWGG 3 cut(s) 89, 148, 514
PspN4I GGNNCC 2 cut(s) 147, 327
PspPI GGNCC 2 cut(s) 512, 522
PstI CTGCAG 1 cut(s) 324
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 1 cut(s) 325
PvuII CAGCTG 2 cut(s) 157, 467
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
RseI CAYNNNNRTG 1 cut(s) 18
SatI GCNGC 6 cut(s) 155, 158, 195, 465, 480, 483
Sau3AI GATC 4 cut(s) 93, 325, 404, 500
Sau96I GGNCC 2 cut(s) 512, 522
ScrFI CCNGG 3 cut(s) 91, 150, 516
SduI GDGCHC 1 cut(s) 110
SetI ASST 9 cut(s) 159, 264, 297, 358, 396, 469, 520, 577, 591
SfaNI GCATC 2 cut(s) 63, 625
SfcI CTRYAG 1 cut(s) 320
SinI GGWCC 2 cut(s) 512, 522
SmiMI CAYNNNNRTG 1 cut(s) 18
SpeI ACTAGT 1 cut(s) 311
Sse9I AATT 4 cut(s) 99, 113, 139, 413
SsiI CCGC 3 cut(s) 58, 479, 531
SspMI CTAG 2 cut(s) 312, 408
StyD4I CCNGG 3 cut(s) 89, 148, 514
TaiI ACGT 1 cut(s) 591
TaqI TCGA 3 cut(s) 79, 96, 209
TaqII GACCGA 1 cut(s) 510
TasI AATT 4 cut(s) 99, 113, 139, 413
TatI WGTACW 1 cut(s) 346
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 3 cut(s) 167, 185, 597
TseI GCWGC 5 cut(s) 154, 157, 194, 464, 482
TspDTI ATGAA 4 cut(s) 191, 285, 429, 642
TspGWI ACGGA 1 cut(s) 210
VpaK11BI GGWCC 2 cut(s) 512, 522
XapI RAATTY 4 cut(s) 99, 113, 139, 413
XmnI GAANNNNTTC 2 cut(s) 366, 436
XspI CTAG 2 cut(s) 312, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.