Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003837

Physical Location & Seq

Genomic Coordinates Forward (+)

19301756 .. 19303508

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCTGATCGATCTTGTTAATAATAACTGGGTGACCATTGTTGTTGTGGGTGTTGTTCCGCATGGAGTTATACAGCTTGGTTCTTTGAATAAAGTAGCTGAAAATGTGAAGCTGATATCTCAAATCACAGATGCTTTTAAGACTCTTCAAGATTTCCCAATAGACCATATCCCTAATCCAAAGCAATATAGCATAAACAGTTCAGTATGCTCGACAAATATATCTCTGGAACGTTTGGCTTCAGGGGTTCTTCCTGATTGCGTAAATAATTTAGATACAGCCACAAACAGAGAAAGCTCCGATATTTGGTCGTCCATTTTCCCACATCTTGGGAAAGATAATGATAGTTCTTACATTTCTTCACTGACCGAAAATTGTCTGAAAGAGGAAGTTGAACTGGCTAATAAGCATGGAGGACTTGAGTCATCCAACTTCAGGTGTGTTGAGATTGGCAAACTGCCTCAGTCAAAATCAAGCGCTCTCAGTATGGAGCATCGCAAACTAGTAGGTGTAGAATTACTTGATAGCAGGAAGTGTAAAGGGGAGAGTAGTGGCTGCAAAGATACTGGAATGGCCTCGATGATCTATGCCCATCCATTATCACATCGATCCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

206

Amino Acids

22.37

Weight (kDa)

5.96

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06150 AT1G06150 AT2G31280 AT2G31280 AT2G31280
fragaria_vesca	FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810
malus_domestica	MD05G1200100.v1.1 MD10G1186300.v1.1
prunus_persica	Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1
pyrus_communis	pycom05g18670 pycom10g16110 pycom10g16120
rosa_chinensis	RchiOBHm_Chr6g0288541
rosa_laevigata	RLG00000012390
rosa_multiflora	Rmu_sc0002058.1_g000016
rosa_roxburghii	Rroxscaffold_7G00180000
rosa_rugosa	Rorug06G0196800 Rorug06G0196900
rosa_samantha	Rh6AG308800 Rh6BG314200 Rh6CG321500 Rh6DG307300
rosa_wichuraiana	Rw6G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	329
AciI	CCGC	1 cut(s)	59
AclI	AACGTT	1 cut(s)	232
AclWI	GGATC	1 cut(s)	603
AcuI	CTGAAG	2 cut(s)	225, 418
AfeI	AGCGCT	1 cut(s)	478
AfiI	CCNNNNNNNGG	3 cut(s)	306, 329, 435
AgsI	TTSAA	3 cut(s)	88, 149, 395
AhlI	ACTAGT	1 cut(s)	502
AluBI	AGCT	4 cut(s)	76, 98, 112, 297
AluI	AGCT	4 cut(s)	76, 98, 112, 297
AlwI	GGATC	1 cut(s)	603
Aor51HI	AGCGCT	1 cut(s)	478
AoxI	GGCC	1 cut(s)	573
ApeKI	GCWGC	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	542
BccI	CCATC	1 cut(s)	600
BcuI	ACTAGT	1 cut(s)	502
BfaI	CTAG	1 cut(s)	503
BfoI	RGCGCY	1 cut(s)	480
BisI	GCNGC	1 cut(s)	556
BlsI	GCNGC	1 cut(s)	557
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	2 cut(s)	121, 502
BmuI	ACTGGG	1 cut(s)	37
BoxI	GACNNNNGTC	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	440
Bsa29I	ATCGAT	2 cut(s)	9, 607
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 329, 435
Bse1I	ACTGG	3 cut(s)	32, 402, 571
BseCI	ATCGAT	2 cut(s)	9, 607
BseGI	GGATG	2 cut(s)	425, 592
BseLI	CCNNNNNNNGG	3 cut(s)	306, 329, 435
BseMII	CTCAG	2 cut(s)	476, 496
BseNI	ACTGG	3 cut(s)	32, 402, 571
BseXI	GCAGC	1 cut(s)	542
BshFI	GGCC	1 cut(s)	575
BshVI	ATCGAT	2 cut(s)	9, 607
BslI	CCNNNNNNNGG	3 cut(s)	306, 329, 435
BsnI	GGCC	1 cut(s)	575
Bsp143I	GATC	4 cut(s)	6, 10, 582, 608
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	575
BspCNI	CTCAG	2 cut(s)	475, 495
BspDI	ATCGAT	2 cut(s)	9, 607
BspPI	GGATC	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	32, 402, 571
BssMI	GATC	4 cut(s)	6, 10, 582, 608
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	462, 482
BstEII	GGTNACC	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	425, 592
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	4 cut(s)	9, 13, 585, 611
BstMBI	GATC	4 cut(s)	6, 10, 582, 608
BstPAI	GACNNNNGTC	1 cut(s)	421
BstPI	GGTNACC	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	542
Bsu15I	ATCGAT	2 cut(s)	9, 607
BsuRI	GGCC	1 cut(s)	575
BsuTUI	ATCGAT	2 cut(s)	9, 607
BtgZI	GCGATG	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	425, 592
BtsIMutI	CAGTG	1 cut(s)	362
CfoI	GCGC	1 cut(s)	479
ClaI	ATCGAT	2 cut(s)	9, 607
CviAII	CATG	2 cut(s)	62, 410
CviJI	RGCY	9 cut(s)	76, 98, 112, 239, 281, 297, 401, 555, 575
CviKI_1	RGCY	9 cut(s)	76, 98, 112, 239, 281, 297, 401, 555, 575
DdeI	CTNAG	2 cut(s)	462, 482
DpnI	GATC	4 cut(s)	8, 12, 584, 610
DpnII	GATC	4 cut(s)	6, 10, 582, 608
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco32I	GATATC	1 cut(s)	117
Eco47III	AGCGCT	1 cut(s)	478
Eco57I	CTGAAG	2 cut(s)	225, 418
Eco91I	GGTNACC	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	117
FaeI	CATG	2 cut(s)	65, 413
FatI	CATG	2 cut(s)	61, 409
Fnu4HI	GCNGC	1 cut(s)	556
FokI	GGATG	2 cut(s)	412, 579
Fsp4HI	GCNGC	1 cut(s)	556
FspBI	CTAG	1 cut(s)	503
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	1 cut(s)	556
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	575
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	2 cut(s)	65, 413
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HinfI	GANTC	2 cut(s)	142, 422
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	301, 381
Hpy188III	TCNNGA	3 cut(s)	149, 227, 254
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	1 cut(s)	558
HpyF3I	CTNAG	2 cut(s)	462, 482
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	2 cut(s)	65, 413
HspAI	GCGC	1 cut(s)	477
Kzo9I	GATC	4 cut(s)	6, 10, 582, 608
LmnI	GCTCC	2 cut(s)	302, 490
LpnPI	CCDG	8 cut(s)	13, 212, 228, 267, 383, 421, 514, 552
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	2 cut(s)	121, 502
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	4 cut(s)	8, 12, 584, 610
MboI	GATC	4 cut(s)	6, 10, 582, 608
MboII	GAAGA	3 cut(s)	137, 242, 351
MluCI	AATT	3 cut(s)	268, 373, 515
MlyI	GAGTC	2 cut(s)	136, 431
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	4 cut(s)	379, 407, 471, 586
MseI	TTAA	3 cut(s)	18, 138, 616
NdeII	GATC	4 cut(s)	6, 10, 582, 608
NlaIII	CATG	2 cut(s)	65, 413
NmuCI	GTSAC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	557
PleI	GAGTC	2 cut(s)	136, 430
PpsI	GAGTC	2 cut(s)	136, 430
PshAI	GACNNNNGTC	1 cut(s)	421
Psp1406I	AACGTT	1 cut(s)	232
PspEI	GGTNACC	1 cut(s)	31
SaqAI	TTAA	3 cut(s)	18, 138, 616
SatI	GCNGC	1 cut(s)	556
Sau3AI	GATC	4 cut(s)	6, 10, 582, 608
SchI	GAGTC	2 cut(s)	136, 431
SetI	ASST	7 cut(s)	78, 100, 114, 235, 299, 440, 511
SfaNI	GCATC	2 cut(s)	121, 502
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SpeI	ACTAGT	1 cut(s)	502
Sse9I	AATT	3 cut(s)	268, 373, 515
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	1 cut(s)	503
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	4 cut(s)	9, 212, 578, 607
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	3 cut(s)	268, 373, 515
Tru1I	TTAA	3 cut(s)	18, 138, 616
Tru9I	TTAA	3 cut(s)	18, 138, 616
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	555
Tsp45I	GTSAC	1 cut(s)	31
TspRI	CASTG	1 cut(s)	369
Van91I	CCANNNNNTGG	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.