Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06150 AT1G06150 AT2G31280 AT2G31280 AT2G31280 |
| fragaria_vesca | FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 |
| malus_domestica | MD05G1200100.v1.1 MD10G1186300.v1.1 |
| prunus_persica | Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1 |
| pyrus_communis | pycom05g18670 pycom10g16110 pycom10g16120 |
| rosa_chinensis | RchiOBHm_Chr6g0288541 |
| rosa_laevigata | RLG00000012390 |
| rosa_multiflora | Rmu_sc0002058.1_g000016 |
| rosa_roxburghii | Rroxscaffold_7G00180000 |
| rosa_rugosa | Rorug06G0196800 Rorug06G0196900 |
| rosa_samantha | Rh6AG308800 Rh6BG314200 Rh6CG321500 Rh6DG307300 |
| rosa_wichuraiana | Rw6G026670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 251 |
| Acc65I | GGTACC | 1 cut(s) | 758 |
| AccB1I | GGYRCC | 4 cut(s) | 98, 393, 434, 758 |
| AccI | GTMKAC | 4 cut(s) | 81, 165, 279, 743 |
| AccII | CGCG | 4 cut(s) | 354, 710, 730, 755 |
| AciI | CCGC | 9 cut(s) | 36, 124, 127, 264, 352, 695, 755, 776, 818 |
| AclWI | GGATC | 5 cut(s) | 179, 323, 382, 959, 972 |
| AcoI | YGGCCR | 1 cut(s) | 869 |
| AcsI | RAATTY | 1 cut(s) | 874 |
| AcvI | CACGTG | 1 cut(s) | 739 |
| AcyI | GRCGYC | 3 cut(s) | 99, 336, 435 |
| AfaI | GTAC | 4 cut(s) | 680, 760, 770, 785 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 694, 867, 945, 952 |
| AflIII | ACRYGT | 2 cut(s) | 531, 738 |
| AgsI | TTSAA | 5 cut(s) | 238, 344, 978, 1019, 1050 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 502 |
| AjiI | CACGTC | 2 cut(s) | 534, 1104 |
| AluBI | AGCT | 7 cut(s) | 48, 148, 292, 325, 618, 1084, 1096 |
| AluI | AGCT | 7 cut(s) | 48, 148, 292, 325, 618, 1084, 1096 |
| Alw21I | GWGCWC | 1 cut(s) | 1039 |
| Alw26I | GTCTC | 2 cut(s) | 205, 1037 |
| AlwI | GGATC | 5 cut(s) | 179, 323, 382, 959, 972 |
| Ama87I | CYCGRG | 1 cut(s) | 779 |
| AoxI | GGCC | 9 cut(s) | 222, 271, 285, 301, 363, 603, 869, 936, 1058 |
| ApoI | RAATTY | 1 cut(s) | 874 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 251, 283 |
| Asp718I | GGTACC | 1 cut(s) | 758 |
| AspA2I | CCTAGG | 1 cut(s) | 379 |
| AspLEI | GCGC | 4 cut(s) | 101, 176, 437, 730 |
| AspS9I | GGNCC | 6 cut(s) | 244, 286, 363, 481, 937, 1059 |
| AsuHPI | GGTGA | 3 cut(s) | 142, 151, 1040 |
| AsuNHI | GCTAGC | 1 cut(s) | 653 |
| AvaI | CYCGRG | 1 cut(s) | 779 |
| AvaII | GGWCC | 2 cut(s) | 244, 481 |
| AvrII | CCTAGG | 1 cut(s) | 379 |
| BamHI | GGATCC | 1 cut(s) | 964 |
| BanI | GGYRCC | 4 cut(s) | 98, 393, 434, 758 |
| BanII | GRGCYC | 1 cut(s) | 708 |
| BbrPI | CACGTG | 1 cut(s) | 739 |
| BbsI | GAAGAC | 1 cut(s) | 871 |
| Bbv12I | GWGCWC | 1 cut(s) | 1039 |
| BccI | CCATC | 4 cut(s) | 323, 364, 512, 898 |
| BceAI | ACGGC | 5 cut(s) | 11, 277, 316, 741, 884 |
| BcoDI | GTCTC | 2 cut(s) | 205, 1037 |
| BfaI | CTAG | 2 cut(s) | 380, 654 |
| BfoI | RGCGCY | 3 cut(s) | 102, 177, 438 |
| BisI | GCNGC | 4 cut(s) | 36, 127, 265, 776 |
| BlnI | CCTAGG | 1 cut(s) | 379 |
| BlsI | GCNGC | 4 cut(s) | 37, 128, 266, 777 |
| Bme18I | GGWCC | 2 cut(s) | 244, 481 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 502 |
| BmeT110I | CYCGRG | 1 cut(s) | 779 |
| BmgBI | CACGTC | 2 cut(s) | 534, 1104 |
| BmgT120I | GGNCC | 6 cut(s) | 244, 286, 363, 481, 937, 1059 |
| BmiI | GGNNCC | 7 cut(s) | 100, 121, 395, 436, 760, 966, 1061 |
| BmsI | GCATC | 1 cut(s) | 726 |
| BmtI | GCTAGC | 1 cut(s) | 657 |
| BpiI | GAAGAC | 1 cut(s) | 871 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 161, 193 |
| BpuEI | CTTGAG | 2 cut(s) | 179, 290 |
| BsaAI | YACGTR | 1 cut(s) | 739 |
| BsaHI | GRCGYC | 3 cut(s) | 99, 336, 435 |
| BsaI | GGTCTC | 1 cut(s) | 205 |
| BsaJI | CCNNGG | 3 cut(s) | 204, 379, 762 |
| BsaWI | WCCGGW | 3 cut(s) | 41, 135, 860 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 694, 867, 945, 952 |
| Bse118I | RCCGGY | 2 cut(s) | 116, 945 |
| Bse3DI | GCAATG | 2 cut(s) | 12, 664 |
| BseDI | CCNNGG | 3 cut(s) | 204, 379, 762 |
| BseGI | GGATG | 2 cut(s) | 214, 826 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 694, 867, 945, 952 |
| BseMI | GCAATG | 2 cut(s) | 12, 664 |
| BseRI | GAGGAG | 2 cut(s) | 490, 727 |
| BseYI | CCCAGC | 2 cut(s) | 144, 288 |
| Bsh1236I | CGCG | 4 cut(s) | 354, 710, 730, 755 |
| Bsh1285I | CGRYCG | 2 cut(s) | 810, 861 |
| BshFI | GGCC | 9 cut(s) | 224, 273, 287, 303, 365, 605, 871, 938, 1060 |
| BshNI | GGYRCC | 4 cut(s) | 98, 393, 434, 758 |
| BsiEI | CGRYCG | 2 cut(s) | 810, 861 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1039 |
| BsiHKCI | CYCGRG | 1 cut(s) | 779 |
| BsiSI | CCGG | 7 cut(s) | 42, 117, 136, 391, 432, 861, 946 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 694, 867, 945, 952 |
| BsmAI | GTCTC | 2 cut(s) | 205, 1037 |
| BsnI | GGCC | 9 cut(s) | 224, 273, 287, 303, 365, 605, 871, 938, 1060 |
| Bso31I | GGTCTC | 1 cut(s) | 205 |
| BsoBI | CYCGRG | 1 cut(s) | 779 |
| Bsp1286I | GDGCHC | 2 cut(s) | 708, 1039 |
| Bsp143I | GATC | 5 cut(s) | 184, 328, 387, 576, 964 |
| Bsp19I | CCATGG | 2 cut(s) | 204, 762 |
| Bsp68I | TCGCGA | 1 cut(s) | 710 |
| BspACI | CCGC | 9 cut(s) | 36, 124, 127, 264, 352, 695, 755, 776, 818 |
| BspANI | GGCC | 9 cut(s) | 224, 273, 287, 303, 365, 605, 871, 938, 1060 |
| BspFNI | CGCG | 4 cut(s) | 354, 710, 730, 755 |
| BspHI | TCATGA | 1 cut(s) | 1039 |
| BspLI | GGNNCC | 7 cut(s) | 100, 121, 395, 436, 760, 966, 1061 |
| BspOI | GCTAGC | 1 cut(s) | 657 |
| BspPI | GGATC | 5 cut(s) | 179, 323, 382, 959, 972 |
| BspT107I | GGYRCC | 4 cut(s) | 98, 393, 434, 758 |
| BspTNI | GGTCTC | 1 cut(s) | 205 |
| BsrDI | GCAATG | 2 cut(s) | 12, 664 |
| BsrFI | RCCGGY | 2 cut(s) | 116, 945 |
| BssAI | RCCGGY | 2 cut(s) | 116, 945 |
| BssECI | CCNNGG | 3 cut(s) | 204, 379, 762 |
| BssMI | GATC | 5 cut(s) | 184, 328, 387, 576, 964 |
| BssNI | GRCGYC | 3 cut(s) | 99, 336, 435 |
| BssT1I | CCWWGG | 3 cut(s) | 204, 379, 762 |
| Bst4CI | ACNGT | 5 cut(s) | 64, 163, 485, 552, 811 |
| BstACI | GRCGYC | 3 cut(s) | 99, 336, 435 |
| BstBAI | YACGTR | 1 cut(s) | 739 |
| BstC8I | GCNNGC | 2 cut(s) | 655, 708 |
| BstDSI | CCRYGG | 2 cut(s) | 204, 762 |
| BstF5I | GGATG | 2 cut(s) | 214, 826 |
| BstFNI | CGCG | 4 cut(s) | 354, 710, 730, 755 |
| BstH2I | RGCGCY | 3 cut(s) | 102, 177, 438 |
| BstHHI | GCGC | 4 cut(s) | 101, 176, 437, 730 |
| BstKTI | GATC | 5 cut(s) | 187, 331, 390, 579, 967 |
| BstMAI | GTCTC | 2 cut(s) | 205, 1037 |
| BstMBI | GATC | 5 cut(s) | 184, 328, 387, 576, 964 |
| BstMCI | CGRYCG | 2 cut(s) | 810, 861 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 32, 126, 264, 270, 432, 692, 877 |
| BstNSI | RCATGY | 1 cut(s) | 775 |
| BstUI | CGCG | 4 cut(s) | 354, 710, 730, 755 |
| BstV2I | GAAGAC | 1 cut(s) | 871 |
| BstX2I | RGATCY | 2 cut(s) | 387, 964 |
| BstYI | RGATCY | 2 cut(s) | 387, 964 |
| BsuRI | GGCC | 9 cut(s) | 224, 273, 287, 303, 365, 605, 871, 938, 1060 |
| BtgI | CCRYGG | 2 cut(s) | 204, 762 |
| BtrI | CACGTC | 2 cut(s) | 534, 1104 |
| BtsCI | GGATG | 2 cut(s) | 214, 826 |
| BtuMI | TCGCGA | 1 cut(s) | 710 |
| Cac8I | GCNNGC | 2 cut(s) | 655, 708 |
| CciI | TCATGA | 1 cut(s) | 1039 |
| CfoI | GCGC | 4 cut(s) | 101, 176, 437, 730 |
| Cfr10I | RCCGGY | 2 cut(s) | 116, 945 |
| Cfr13I | GGNCC | 6 cut(s) | 244, 286, 363, 481, 937, 1059 |
| CseI | GACGC | 2 cut(s) | 344, 754 |
| Csp6I | GTAC | 4 cut(s) | 679, 759, 769, 784 |
| CviAII | CATG | 4 cut(s) | 205, 763, 772, 1040 |
| CviQI | GTAC | 4 cut(s) | 679, 759, 769, 784 |
| DinI | GGCGCC | 2 cut(s) | 100, 436 |
| DpnI | GATC | 5 cut(s) | 186, 330, 389, 578, 966 |
| DpnII | GATC | 5 cut(s) | 184, 328, 387, 576, 964 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 251 |
| DriI | GACNNNNNGTC | 1 cut(s) | 502 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 251 |
| EaeI | YGGCCR | 1 cut(s) | 869 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 502 |
| EciI | GGCGGA | 1 cut(s) | 833 |
| Eco130I | CCWWGG | 3 cut(s) | 204, 379, 762 |
| Eco24I | GRGCYC | 1 cut(s) | 708 |
| Eco31I | GGTCTC | 1 cut(s) | 205 |
| Eco32I | GATATC | 1 cut(s) | 646 |
| Eco47I | GGWCC | 2 cut(s) | 244, 481 |
| Eco72I | CACGTG | 1 cut(s) | 739 |
| Eco88I | CYCGRG | 1 cut(s) | 779 |
| EcoO109I | RGGNCCY | 2 cut(s) | 244, 1059 |
| EcoRV | GATATC | 1 cut(s) | 646 |
| EcoT14I | CCWWGG | 3 cut(s) | 204, 379, 762 |
| EcoT38I | GRGCYC | 1 cut(s) | 708 |
| EgeI | GGCGCC | 2 cut(s) | 100, 436 |
| EheI | GGCGCC | 2 cut(s) | 100, 436 |
| ErhI | CCWWGG | 3 cut(s) | 204, 379, 762 |
| FaeI | CATG | 4 cut(s) | 208, 766, 775, 1043 |
| FatI | CATG | 4 cut(s) | 204, 762, 771, 1039 |
| FauI | CCCGC | 2 cut(s) | 131, 748 |
| FblI | GTMKAC | 4 cut(s) | 81, 165, 279, 743 |
| Fnu4HI | GCNGC | 4 cut(s) | 36, 127, 265, 776 |
| FokI | GGATG | 2 cut(s) | 221, 833 |
| FriOI | GRGCYC | 1 cut(s) | 708 |
| Fsp4HI | GCNGC | 4 cut(s) | 36, 127, 265, 776 |
| FspBI | CTAG | 2 cut(s) | 380, 654 |
| GlaI | GCGC | 4 cut(s) | 100, 175, 436, 729 |
| GluI | GCNGC | 4 cut(s) | 36, 127, 265, 776 |
| GsaI | CCCAGC | 2 cut(s) | 148, 292 |
| HaeII | RGCGCY | 3 cut(s) | 102, 177, 438 |
| HaeIII | GGCC | 9 cut(s) | 224, 273, 287, 303, 365, 605, 871, 938, 1060 |
| HapII | CCGG | 7 cut(s) | 42, 117, 136, 391, 432, 861, 946 |
| HgaI | GACGC | 2 cut(s) | 344, 754 |
| HhaI | GCGC | 4 cut(s) | 101, 176, 437, 730 |
| Hin1I | GRCGYC | 3 cut(s) | 99, 336, 435 |
| Hin1II | CATG | 4 cut(s) | 208, 766, 775, 1043 |
| Hin6I | GCGC | 4 cut(s) | 99, 174, 435, 728 |
| HinP1I | GCGC | 4 cut(s) | 99, 174, 435, 728 |
| HincII | GTYRAC | 3 cut(s) | 166, 507, 744 |
| HindII | GTYRAC | 3 cut(s) | 166, 507, 744 |
| HindIII | AAGCTT | 1 cut(s) | 46 |
| HinfI | GANTC | 5 cut(s) | 16, 156, 412, 445, 497 |
| HpaII | CCGG | 7 cut(s) | 42, 117, 136, 391, 432, 861, 946 |
| HphI | GGTGA | 3 cut(s) | 142, 151, 1040 |
| Hpy166II | GTNNAC | 7 cut(s) | 82, 114, 166, 280, 507, 744, 798 |
| Hpy188I | TCNGA | 6 cut(s) | 298, 387, 419, 450, 969, 1101 |
| Hpy188III | TCNNGA | 7 cut(s) | 319, 332, 479, 494, 709, 1006, 1040 |
| Hpy8I | GTNNAC | 7 cut(s) | 82, 114, 166, 280, 507, 744, 798 |
| Hpy99I | CGWCG | 7 cut(s) | 167, 170, 263, 302, 338, 748, 1105 |
| HpyAV | CCTTC | 4 cut(s) | 190, 785, 808, 989 |
| HpyCH4III | ACNGT | 5 cut(s) | 64, 163, 485, 552, 811 |
| HpyCH4IV | ACGT | 3 cut(s) | 533, 738, 1103 |
| HpyCH4V | TGCA | 2 cut(s) | 93, 613 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 32, 126, 264, 270, 432, 692, 877 |
| HpySE526I | ACGT | 3 cut(s) | 533, 738, 1103 |
| Hsp92I | GRCGYC | 3 cut(s) | 99, 336, 435 |
| Hsp92II | CATG | 4 cut(s) | 208, 766, 775, 1043 |
| HspAI | GCGC | 4 cut(s) | 99, 174, 435, 728 |
| KasI | GGCGCC | 2 cut(s) | 98, 434 |
| KpnI | GGTACC | 1 cut(s) | 762 |
| Kzo9I | GATC | 5 cut(s) | 184, 328, 387, 576, 964 |
| LmnI | GCTCC | 3 cut(s) | 125, 714, 1093 |
| LweI | GCATC | 1 cut(s) | 726 |
| MaeI | CTAG | 2 cut(s) | 380, 654 |
| MaeII | ACGT | 3 cut(s) | 533, 738, 1103 |
| MalI | GATC | 5 cut(s) | 186, 330, 389, 578, 966 |
| MboI | GATC | 5 cut(s) | 184, 328, 387, 576, 964 |
| MboII | GAAGA | 3 cut(s) | 43, 61, 876 |
| MflI | RGATCY | 2 cut(s) | 387, 964 |
| MhlI | GDGCHC | 2 cut(s) | 708, 1039 |
| MluCI | AATT | 4 cut(s) | 545, 749, 874, 1020 |
| Mly113I | GGCGCC | 2 cut(s) | 99, 435 |
| MlyI | GAGTC | 2 cut(s) | 10, 491 |
| MmeI | TCCRAC | 3 cut(s) | 321, 648, 828 |
| MseI | TTAA | 3 cut(s) | 408, 842, 1088 |
| MspI | CCGG | 7 cut(s) | 42, 117, 136, 391, 432, 861, 946 |
| MvnI | CGCG | 4 cut(s) | 354, 710, 730, 755 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 32, 126, 264, 270, 432, 692, 877 |
| NarI | GGCGCC | 2 cut(s) | 99, 435 |
| NcoI | CCATGG | 2 cut(s) | 204, 762 |
| NdeII | GATC | 5 cut(s) | 184, 328, 387, 576, 964 |
| NheI | GCTAGC | 1 cut(s) | 653 |
| NlaIII | CATG | 4 cut(s) | 208, 766, 775, 1043 |
| NlaIV | GGNNCC | 7 cut(s) | 100, 121, 395, 436, 760, 966, 1061 |
| NmeAIII | GCCGAG | 2 cut(s) | 391, 906 |
| NruI | TCGCGA | 1 cut(s) | 710 |
| NspI | RCATGY | 1 cut(s) | 775 |
| PagI | TCATGA | 1 cut(s) | 1039 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 60, 137, 255, 423, 585 |
| PfeI | GAWTC | 3 cut(s) | 156, 412, 445 |
| PkrI | GCNGC | 4 cut(s) | 37, 128, 266, 777 |
| PleI | GAGTC | 2 cut(s) | 10, 491 |
| PluTI | GGCGCC | 2 cut(s) | 102, 438 |
| PmaCI | CACGTG | 1 cut(s) | 739 |
| PmlI | CACGTG | 1 cut(s) | 739 |
| PpsI | GAGTC | 2 cut(s) | 10, 491 |
| Ppu21I | YACGTR | 1 cut(s) | 739 |
| PpuMI | RGGWCCY | 1 cut(s) | 244 |
| Psp5II | RGGWCCY | 1 cut(s) | 244 |
| PspCI | CACGTG | 1 cut(s) | 739 |
| PspFI | CCCAGC | 2 cut(s) | 144, 288 |
| PspN4I | GGNNCC | 7 cut(s) | 100, 121, 395, 436, 760, 966, 1061 |
| PspPI | GGNCC | 6 cut(s) | 244, 286, 363, 481, 937, 1059 |
| PspPPI | RGGWCCY | 1 cut(s) | 244 |
| PsuI | RGATCY | 2 cut(s) | 387, 964 |
| RruI | TCGCGA | 1 cut(s) | 710 |
| RsaI | GTAC | 4 cut(s) | 680, 760, 770, 785 |
| RsaNI | GTAC | 4 cut(s) | 679, 759, 769, 784 |
| SalI | GTCGAC | 2 cut(s) | 164, 742 |
| SaqAI | TTAA | 3 cut(s) | 408, 842, 1088 |
| SatI | GCNGC | 4 cut(s) | 36, 127, 265, 776 |
| Sau3AI | GATC | 5 cut(s) | 184, 328, 387, 576, 964 |
| Sau96I | GGNCC | 6 cut(s) | 244, 286, 363, 481, 937, 1059 |
| SchI | GAGTC | 2 cut(s) | 10, 491 |
| SduI | GDGCHC | 2 cut(s) | 708, 1039 |
| SfaNI | GCATC | 1 cut(s) | 726 |
| SfoI | GGCGCC | 2 cut(s) | 100, 436 |
| SgrDI | CGTCGACG | 1 cut(s) | 164 |
| SinI | GGWCC | 2 cut(s) | 244, 481 |
| SmlI | CTYRAG | 2 cut(s) | 194, 305 |
| SmoI | CTYRAG | 2 cut(s) | 194, 305 |
| Sse9I | AATT | 4 cut(s) | 545, 749, 874, 1020 |
| SsiI | CCGC | 9 cut(s) | 36, 124, 127, 264, 352, 695, 755, 776, 818 |
| SspDI | GGCGCC | 2 cut(s) | 98, 434 |
| SspMI | CTAG | 2 cut(s) | 380, 654 |
| StyI | CCWWGG | 3 cut(s) | 204, 379, 762 |
| TaaI | ACNGT | 5 cut(s) | 64, 163, 485, 552, 811 |
| TaiI | ACGT | 3 cut(s) | 536, 741, 1106 |
| TaqI | TCGA | 5 cut(s) | 165, 183, 327, 720, 743 |
| TasI | AATT | 4 cut(s) | 545, 749, 874, 1020 |
| TatI | WGTACW | 1 cut(s) | 783 |
| TauI | GCSGC | 4 cut(s) | 38, 129, 267, 778 |
| TfiI | GAWTC | 3 cut(s) | 156, 412, 445 |
| Tru1I | TTAA | 3 cut(s) | 408, 842, 1088 |
| Tru9I | TTAA | 3 cut(s) | 408, 842, 1088 |
| TspDTI | ATGAA | 3 cut(s) | 225, 1008, 1082 |
| TspGWI | ACGGA | 3 cut(s) | 67, 524, 909 |
| VpaK11BI | GGWCC | 2 cut(s) | 244, 481 |
| XapI | RAATTY | 1 cut(s) | 874 |
| XceI | RCATGY | 1 cut(s) | 775 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 211 |
| XmaJI | CCTAGG | 1 cut(s) | 379 |
| XmiI | GTMKAC | 4 cut(s) | 81, 165, 279, 743 |
| XspI | CTAG | 2 cut(s) | 380, 654 |