Rorug06G0196800
BHLH Family

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
31704385 .. 31705803
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0196800.1

Sequence Viewer

Length: 1107 bp
ATGGCAATGGACAAGACTCTCCAAGCCGTTCTCGCCGCCACCGGAAGCTTCTTCGCCATAACCGTAATCTTCGCCTCCGTCTACTTACTCTGCAAGGGCGCCAAGTCCAAGTCCACCGGCTCCCGCCGCACGAACCGGACGACCCAGCTCACCAGAATCACCGTCGACGAGAGCGCCTCCTTCGATCCCTCTCTCAAGGTCTCCATGGATGAAGTGGTCAAGGCCACCAAGAACTTCAACAAGGACCTCGTAGTCGGCGACGGCGGCTTCGGCCTCGTCTACAAGGCCCAGCTCTCCGACGGCCTCAAGGTCGCCATCAAGAAGCTCGATCCCGACGCCTTTCAAGGCTTCCGCGAGTTTCGGGCCGAGATGGAAACCCTAGGTCAGATCCGGCACCCCAATCTTGTTAAGATTCTCGGATATTGCGTGTCCGGCGCCGATAGGATTCTGATTTACGAGTTTATGGAGAGGGGAAATCTGGACCGTTGGCTTCACGACTCCTCGTCAACGGACTTTGATGGCTATGATGACACGTCTGGGTGTAAATTACCGTTATCTTGGAAAACGAGGAATAAGATCGTTAGGGGCGTGGCTAATGCGTTGGCCTTTTTGCACAGCTTGGAGAAGCCTATAATCCATAGGGATATCAAGGCTAGCAATGTTTTGTTGGACAGGGAGTACGAAGCCCATATTGCGGATTTCGGGCTCGCGAGGAGCATCGACACGGCGCGTTCCCACGTGTCGACGCAATTCGCGGGTACCATGGGGTACATGCCGCCCGAGTACAAAGAAGGGTTCACGGGGGCGACCGTGAAGGCGGATGTGTTTAGTTTTGGGATTTTAATGTTGGAGGTTGCGACCGGAAGACGGCCAAATTTGCCGAGCGTGTTTGACGGAAAAGAGATGGGATTGGTGGAATGGGCGAGGAAAATGGTGGCCCAAAACCGGCAAATGGAAATGGTGGATCCGAGTATTTCAAGGGAGGATTTAGATGAAGGAAATGTCAAGAAGTATTTTGAAATTGCTGGTGAATGTGCTCATGAGACTTCAAGGCAAAGGCCCCTAATGAAAGATGTCATTGAGCTGTTAAAGGAGCTTCCGACGTGA

Protein Analysis

368

Amino Acids

41.0

Weight (kDa)

7.06

Isoelectric Point (pI)

26.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 82 - 293 9.7e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 84 - 362 7.7e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
Acc65I GGTACC 1 cut(s) 758
AccB1I GGYRCC 4 cut(s) 98, 393, 434, 758
AccI GTMKAC 4 cut(s) 81, 165, 279, 743
AccII CGCG 4 cut(s) 354, 710, 730, 755
AciI CCGC 9 cut(s) 36, 124, 127, 264, 352, 695, 755, 776, 818
AclWI GGATC 5 cut(s) 179, 323, 382, 959, 972
AcoI YGGCCR 1 cut(s) 869
AcsI RAATTY 1 cut(s) 874
AcvI CACGTG 1 cut(s) 739
AcyI GRCGYC 3 cut(s) 99, 336, 435
AfaI GTAC 4 cut(s) 680, 760, 770, 785
AfiI CCNNNNNNNGG 4 cut(s) 694, 867, 945, 952
AflIII ACRYGT 2 cut(s) 531, 738
AgsI TTSAA 5 cut(s) 238, 344, 978, 1019, 1050
AhdI GACNNNNNGTC 1 cut(s) 502
AjiI CACGTC 2 cut(s) 534, 1104
AluBI AGCT 7 cut(s) 48, 148, 292, 325, 618, 1084, 1096
AluI AGCT 7 cut(s) 48, 148, 292, 325, 618, 1084, 1096
Alw21I GWGCWC 1 cut(s) 1039
Alw26I GTCTC 2 cut(s) 205, 1037
AlwI GGATC 5 cut(s) 179, 323, 382, 959, 972
Ama87I CYCGRG 1 cut(s) 779
AoxI GGCC 9 cut(s) 222, 271, 285, 301, 363, 603, 869, 936, 1058
ApoI RAATTY 1 cut(s) 874
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
Asp718I GGTACC 1 cut(s) 758
AspA2I CCTAGG 1 cut(s) 379
AspLEI GCGC 4 cut(s) 101, 176, 437, 730
AspS9I GGNCC 6 cut(s) 244, 286, 363, 481, 937, 1059
AsuHPI GGTGA 3 cut(s) 142, 151, 1040
AsuNHI GCTAGC 1 cut(s) 653
AvaI CYCGRG 1 cut(s) 779
AvaII GGWCC 2 cut(s) 244, 481
AvrII CCTAGG 1 cut(s) 379
BamHI GGATCC 1 cut(s) 964
BanI GGYRCC 4 cut(s) 98, 393, 434, 758
BanII GRGCYC 1 cut(s) 708
BbrPI CACGTG 1 cut(s) 739
BbsI GAAGAC 1 cut(s) 871
Bbv12I GWGCWC 1 cut(s) 1039
BccI CCATC 4 cut(s) 323, 364, 512, 898
BceAI ACGGC 5 cut(s) 11, 277, 316, 741, 884
BcoDI GTCTC 2 cut(s) 205, 1037
BfaI CTAG 2 cut(s) 380, 654
BfoI RGCGCY 3 cut(s) 102, 177, 438
BisI GCNGC 4 cut(s) 36, 127, 265, 776
BlnI CCTAGG 1 cut(s) 379
BlsI GCNGC 4 cut(s) 37, 128, 266, 777
Bme18I GGWCC 2 cut(s) 244, 481
BmeRI GACNNNNNGTC 1 cut(s) 502
BmeT110I CYCGRG 1 cut(s) 779
BmgBI CACGTC 2 cut(s) 534, 1104
BmgT120I GGNCC 6 cut(s) 244, 286, 363, 481, 937, 1059
BmiI GGNNCC 7 cut(s) 100, 121, 395, 436, 760, 966, 1061
BmsI GCATC 1 cut(s) 726
BmtI GCTAGC 1 cut(s) 657
BpiI GAAGAC 1 cut(s) 871
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpuEI CTTGAG 2 cut(s) 179, 290
BsaAI YACGTR 1 cut(s) 739
BsaHI GRCGYC 3 cut(s) 99, 336, 435
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 3 cut(s) 204, 379, 762
BsaWI WCCGGW 3 cut(s) 41, 135, 860
Bsc4I CCNNNNNNNGG 4 cut(s) 694, 867, 945, 952
Bse118I RCCGGY 2 cut(s) 116, 945
Bse3DI GCAATG 2 cut(s) 12, 664
BseDI CCNNGG 3 cut(s) 204, 379, 762
BseGI GGATG 2 cut(s) 214, 826
BseLI CCNNNNNNNGG 4 cut(s) 694, 867, 945, 952
BseMI GCAATG 2 cut(s) 12, 664
BseRI GAGGAG 2 cut(s) 490, 727
BseYI CCCAGC 2 cut(s) 144, 288
Bsh1236I CGCG 4 cut(s) 354, 710, 730, 755
Bsh1285I CGRYCG 2 cut(s) 810, 861
BshFI GGCC 9 cut(s) 224, 273, 287, 303, 365, 605, 871, 938, 1060
BshNI GGYRCC 4 cut(s) 98, 393, 434, 758
BsiEI CGRYCG 2 cut(s) 810, 861
BsiHKAI GWGCWC 1 cut(s) 1039
BsiHKCI CYCGRG 1 cut(s) 779
BsiSI CCGG 7 cut(s) 42, 117, 136, 391, 432, 861, 946
BslI CCNNNNNNNGG 4 cut(s) 694, 867, 945, 952
BsmAI GTCTC 2 cut(s) 205, 1037
BsnI GGCC 9 cut(s) 224, 273, 287, 303, 365, 605, 871, 938, 1060
Bso31I GGTCTC 1 cut(s) 205
BsoBI CYCGRG 1 cut(s) 779
Bsp1286I GDGCHC 2 cut(s) 708, 1039
Bsp143I GATC 5 cut(s) 184, 328, 387, 576, 964
Bsp19I CCATGG 2 cut(s) 204, 762
Bsp68I TCGCGA 1 cut(s) 710
BspACI CCGC 9 cut(s) 36, 124, 127, 264, 352, 695, 755, 776, 818
BspANI GGCC 9 cut(s) 224, 273, 287, 303, 365, 605, 871, 938, 1060
BspFNI CGCG 4 cut(s) 354, 710, 730, 755
BspHI TCATGA 1 cut(s) 1039
BspLI GGNNCC 7 cut(s) 100, 121, 395, 436, 760, 966, 1061
BspOI GCTAGC 1 cut(s) 657
BspPI GGATC 5 cut(s) 179, 323, 382, 959, 972
BspT107I GGYRCC 4 cut(s) 98, 393, 434, 758
BspTNI GGTCTC 1 cut(s) 205
BsrDI GCAATG 2 cut(s) 12, 664
BsrFI RCCGGY 2 cut(s) 116, 945
BssAI RCCGGY 2 cut(s) 116, 945
BssECI CCNNGG 3 cut(s) 204, 379, 762
BssMI GATC 5 cut(s) 184, 328, 387, 576, 964
BssNI GRCGYC 3 cut(s) 99, 336, 435
BssT1I CCWWGG 3 cut(s) 204, 379, 762
Bst4CI ACNGT 5 cut(s) 64, 163, 485, 552, 811
BstACI GRCGYC 3 cut(s) 99, 336, 435
BstBAI YACGTR 1 cut(s) 739
BstC8I GCNNGC 2 cut(s) 655, 708
BstDSI CCRYGG 2 cut(s) 204, 762
BstF5I GGATG 2 cut(s) 214, 826
BstFNI CGCG 4 cut(s) 354, 710, 730, 755
BstH2I RGCGCY 3 cut(s) 102, 177, 438
BstHHI GCGC 4 cut(s) 101, 176, 437, 730
BstKTI GATC 5 cut(s) 187, 331, 390, 579, 967
BstMAI GTCTC 2 cut(s) 205, 1037
BstMBI GATC 5 cut(s) 184, 328, 387, 576, 964
BstMCI CGRYCG 2 cut(s) 810, 861
BstMWI GCNNNNNNNGC 7 cut(s) 32, 126, 264, 270, 432, 692, 877
BstNSI RCATGY 1 cut(s) 775
BstUI CGCG 4 cut(s) 354, 710, 730, 755
BstV2I GAAGAC 1 cut(s) 871
BstX2I RGATCY 2 cut(s) 387, 964
BstYI RGATCY 2 cut(s) 387, 964
BsuRI GGCC 9 cut(s) 224, 273, 287, 303, 365, 605, 871, 938, 1060
BtgI CCRYGG 2 cut(s) 204, 762
BtrI CACGTC 2 cut(s) 534, 1104
BtsCI GGATG 2 cut(s) 214, 826
BtuMI TCGCGA 1 cut(s) 710
Cac8I GCNNGC 2 cut(s) 655, 708
CciI TCATGA 1 cut(s) 1039
CfoI GCGC 4 cut(s) 101, 176, 437, 730
Cfr10I RCCGGY 2 cut(s) 116, 945
Cfr13I GGNCC 6 cut(s) 244, 286, 363, 481, 937, 1059
CseI GACGC 2 cut(s) 344, 754
Csp6I GTAC 4 cut(s) 679, 759, 769, 784
CviAII CATG 4 cut(s) 205, 763, 772, 1040
CviQI GTAC 4 cut(s) 679, 759, 769, 784
DinI GGCGCC 2 cut(s) 100, 436
DpnI GATC 5 cut(s) 186, 330, 389, 578, 966
DpnII GATC 5 cut(s) 184, 328, 387, 576, 964
DrdI GACNNNNNNGTC 1 cut(s) 251
DriI GACNNNNNGTC 1 cut(s) 502
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 869
Eam1105I GACNNNNNGTC 1 cut(s) 502
EciI GGCGGA 1 cut(s) 833
Eco130I CCWWGG 3 cut(s) 204, 379, 762
Eco24I GRGCYC 1 cut(s) 708
Eco31I GGTCTC 1 cut(s) 205
Eco32I GATATC 1 cut(s) 646
Eco47I GGWCC 2 cut(s) 244, 481
Eco72I CACGTG 1 cut(s) 739
Eco88I CYCGRG 1 cut(s) 779
EcoO109I RGGNCCY 2 cut(s) 244, 1059
EcoRV GATATC 1 cut(s) 646
EcoT14I CCWWGG 3 cut(s) 204, 379, 762
EcoT38I GRGCYC 1 cut(s) 708
EgeI GGCGCC 2 cut(s) 100, 436
EheI GGCGCC 2 cut(s) 100, 436
ErhI CCWWGG 3 cut(s) 204, 379, 762
FaeI CATG 4 cut(s) 208, 766, 775, 1043
FatI CATG 4 cut(s) 204, 762, 771, 1039
FauI CCCGC 2 cut(s) 131, 748
FblI GTMKAC 4 cut(s) 81, 165, 279, 743
Fnu4HI GCNGC 4 cut(s) 36, 127, 265, 776
FokI GGATG 2 cut(s) 221, 833
FriOI GRGCYC 1 cut(s) 708
Fsp4HI GCNGC 4 cut(s) 36, 127, 265, 776
FspBI CTAG 2 cut(s) 380, 654
GlaI GCGC 4 cut(s) 100, 175, 436, 729
GluI GCNGC 4 cut(s) 36, 127, 265, 776
GsaI CCCAGC 2 cut(s) 148, 292
HaeII RGCGCY 3 cut(s) 102, 177, 438
HaeIII GGCC 9 cut(s) 224, 273, 287, 303, 365, 605, 871, 938, 1060
HapII CCGG 7 cut(s) 42, 117, 136, 391, 432, 861, 946
HgaI GACGC 2 cut(s) 344, 754
HhaI GCGC 4 cut(s) 101, 176, 437, 730
Hin1I GRCGYC 3 cut(s) 99, 336, 435
Hin1II CATG 4 cut(s) 208, 766, 775, 1043
Hin6I GCGC 4 cut(s) 99, 174, 435, 728
HinP1I GCGC 4 cut(s) 99, 174, 435, 728
HincII GTYRAC 3 cut(s) 166, 507, 744
HindII GTYRAC 3 cut(s) 166, 507, 744
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 5 cut(s) 16, 156, 412, 445, 497
HpaII CCGG 7 cut(s) 42, 117, 136, 391, 432, 861, 946
HphI GGTGA 3 cut(s) 142, 151, 1040
Hpy166II GTNNAC 7 cut(s) 82, 114, 166, 280, 507, 744, 798
Hpy188I TCNGA 6 cut(s) 298, 387, 419, 450, 969, 1101
Hpy188III TCNNGA 7 cut(s) 319, 332, 479, 494, 709, 1006, 1040
Hpy8I GTNNAC 7 cut(s) 82, 114, 166, 280, 507, 744, 798
Hpy99I CGWCG 7 cut(s) 167, 170, 263, 302, 338, 748, 1105
HpyAV CCTTC 4 cut(s) 190, 785, 808, 989
HpyCH4III ACNGT 5 cut(s) 64, 163, 485, 552, 811
HpyCH4IV ACGT 3 cut(s) 533, 738, 1103
HpyCH4V TGCA 2 cut(s) 93, 613
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 126, 264, 270, 432, 692, 877
HpySE526I ACGT 3 cut(s) 533, 738, 1103
Hsp92I GRCGYC 3 cut(s) 99, 336, 435
Hsp92II CATG 4 cut(s) 208, 766, 775, 1043
HspAI GCGC 4 cut(s) 99, 174, 435, 728
KasI GGCGCC 2 cut(s) 98, 434
KpnI GGTACC 1 cut(s) 762
Kzo9I GATC 5 cut(s) 184, 328, 387, 576, 964
LmnI GCTCC 3 cut(s) 125, 714, 1093
LweI GCATC 1 cut(s) 726
MaeI CTAG 2 cut(s) 380, 654
MaeII ACGT 3 cut(s) 533, 738, 1103
MalI GATC 5 cut(s) 186, 330, 389, 578, 966
MboI GATC 5 cut(s) 184, 328, 387, 576, 964
MboII GAAGA 3 cut(s) 43, 61, 876
MflI RGATCY 2 cut(s) 387, 964
MhlI GDGCHC 2 cut(s) 708, 1039
MluCI AATT 4 cut(s) 545, 749, 874, 1020
Mly113I GGCGCC 2 cut(s) 99, 435
MlyI GAGTC 2 cut(s) 10, 491
MmeI TCCRAC 3 cut(s) 321, 648, 828
MseI TTAA 3 cut(s) 408, 842, 1088
MspI CCGG 7 cut(s) 42, 117, 136, 391, 432, 861, 946
MvnI CGCG 4 cut(s) 354, 710, 730, 755
MwoI GCNNNNNNNGC 7 cut(s) 32, 126, 264, 270, 432, 692, 877
NarI GGCGCC 2 cut(s) 99, 435
NcoI CCATGG 2 cut(s) 204, 762
NdeII GATC 5 cut(s) 184, 328, 387, 576, 964
NheI GCTAGC 1 cut(s) 653
NlaIII CATG 4 cut(s) 208, 766, 775, 1043
NlaIV GGNNCC 7 cut(s) 100, 121, 395, 436, 760, 966, 1061
NmeAIII GCCGAG 2 cut(s) 391, 906
NruI TCGCGA 1 cut(s) 710
NspI RCATGY 1 cut(s) 775
PagI TCATGA 1 cut(s) 1039
PcsI WCGNNNNNNNCGW 5 cut(s) 60, 137, 255, 423, 585
PfeI GAWTC 3 cut(s) 156, 412, 445
PkrI GCNGC 4 cut(s) 37, 128, 266, 777
PleI GAGTC 2 cut(s) 10, 491
PluTI GGCGCC 2 cut(s) 102, 438
PmaCI CACGTG 1 cut(s) 739
PmlI CACGTG 1 cut(s) 739
PpsI GAGTC 2 cut(s) 10, 491
Ppu21I YACGTR 1 cut(s) 739
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
PspCI CACGTG 1 cut(s) 739
PspFI CCCAGC 2 cut(s) 144, 288
PspN4I GGNNCC 7 cut(s) 100, 121, 395, 436, 760, 966, 1061
PspPI GGNCC 6 cut(s) 244, 286, 363, 481, 937, 1059
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 2 cut(s) 387, 964
RruI TCGCGA 1 cut(s) 710
RsaI GTAC 4 cut(s) 680, 760, 770, 785
RsaNI GTAC 4 cut(s) 679, 759, 769, 784
SalI GTCGAC 2 cut(s) 164, 742
SaqAI TTAA 3 cut(s) 408, 842, 1088
SatI GCNGC 4 cut(s) 36, 127, 265, 776
Sau3AI GATC 5 cut(s) 184, 328, 387, 576, 964
Sau96I GGNCC 6 cut(s) 244, 286, 363, 481, 937, 1059
SchI GAGTC 2 cut(s) 10, 491
SduI GDGCHC 2 cut(s) 708, 1039
SfaNI GCATC 1 cut(s) 726
SfoI GGCGCC 2 cut(s) 100, 436
SgrDI CGTCGACG 1 cut(s) 164
SinI GGWCC 2 cut(s) 244, 481
SmlI CTYRAG 2 cut(s) 194, 305
SmoI CTYRAG 2 cut(s) 194, 305
Sse9I AATT 4 cut(s) 545, 749, 874, 1020
SsiI CCGC 9 cut(s) 36, 124, 127, 264, 352, 695, 755, 776, 818
SspDI GGCGCC 2 cut(s) 98, 434
SspMI CTAG 2 cut(s) 380, 654
StyI CCWWGG 3 cut(s) 204, 379, 762
TaaI ACNGT 5 cut(s) 64, 163, 485, 552, 811
TaiI ACGT 3 cut(s) 536, 741, 1106
TaqI TCGA 5 cut(s) 165, 183, 327, 720, 743
TasI AATT 4 cut(s) 545, 749, 874, 1020
TatI WGTACW 1 cut(s) 783
TauI GCSGC 4 cut(s) 38, 129, 267, 778
TfiI GAWTC 3 cut(s) 156, 412, 445
Tru1I TTAA 3 cut(s) 408, 842, 1088
Tru9I TTAA 3 cut(s) 408, 842, 1088
TspDTI ATGAA 3 cut(s) 225, 1008, 1082
TspGWI ACGGA 3 cut(s) 67, 524, 909
VpaK11BI GGWCC 2 cut(s) 244, 481
XapI RAATTY 1 cut(s) 874
XceI RCATGY 1 cut(s) 775
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XmaJI CCTAGG 1 cut(s) 379
XmiI GTMKAC 4 cut(s) 81, 165, 279, 743
XspI CTAG 2 cut(s) 380, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.