Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003837

Physical Location & Seq

Genomic Coordinates Reverse (-)

18223352 .. 18228808

Gene Structure 5457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2184 bp

ATGGGTACTGACTTGCACCATGTGCTGAGAAGCCTCTGTTTCAATACGGAGTGGAACTACGCCATTTTCTGGAAACTGAAGCATCGGGCTCGAATGGTGCTGACTTGGGAGGACGCTTACTATGACAACTGTGAGCAACATGATAATTTAGGGAATATATGCTTTATTAAGACACTGGAGGCATTGCATGGCAGCCATTATCCACATGATCCCCTTGGGCTAGCCGTGGCAAAAATGTCGTATCATGTATATACTCTGGGAGAAGGGATTGTCGGACAAGTGGCAGTTACTGGGAAGCATCAGTGGATCTTTGCAGATGATATTTTGAAGAATAACTGTTCACCGTCTGAGTACTGTGATGGATGGCAAAGTCAATTTTCAGCTGGCATAAGGACTATTGTCGTTGTAGCTGTTGTTCCGCATGGAGTTGTACAGCTTGGTTCTTTAAATAAAATCACTGAAAATGTGAAGCTGGTATCTCATATCAAAGATGTTTTTATGGCTCAAGATTTCCCAGCAGGGCATATCCAATCTAGCATAGACAGTTCAGTATGTGAGGCAATATCTCCAAAAAATTTGGTTTCAGGAACTTTTCCGGATTGCTTGCAAAATTTAGATAAAGCCATAAATAGAGAAAAGTCAGATGTTTGGTTGTCCGCTTTTCCCCAGTCTGGGAAAGACAGTGATAGTTCTTACATTTTTCCATTGACTGGCATTCTGAAGAATGCAGTTGAAGTGGTCAATAAGCATGGAGAACTTGAGTCATCCAACATGGGAGGTGATGAGAGTCCCAAACTACATCAGTCAAAATCAAGTATCTTCAAGTTGGAAAATTGCAAATTAGGAGTGGAATTACCTGATAGCAGGAAATGTACAGGGGAGAGTAGTGGCTGCAAAGATATGGGGATGTCTTCCACAAACAATGCCAATCCATTATCTCATGCTAATGATTGTGCAGACTTATCTTCAACGTTTGTCAACTCTGCTGTAAATGACAGGGTTAATTTGGACAGTATAGATCTTTACCATAATGAGGTGTTGCACGTAAGTGAACCCTTGGATGTTAAGTTTCAGAGCAACCTTGAAAACTTGAAGTTTCCAACTGAACCAGGTCACGTGGACACATCCAGTACATCTTTGATGTTCCCTGCTGGCTGTGAGTTGCATGAAGCACTTGGACCAGCTTTTATGAATAAGAGTAACTTTTTTGATTGGGAAGCAGGGAAGATTGGAGATAGAATTACTACTGAGATGCCTGAGGGAATGAACTCTAGCCAGTTGACGTCTGATTCTTGCCCAGAGCATCTTCTTGAAGCTGTAGTGGCTAAAGTTTGCCATAGTGGCAGTCATGTTAAAAGTGAAAAATCATTCTGTAAATCAATGCAGTCTCTGTTGACAACTGAAAAGTATCCAGAGCCTTCTAGCCATACTACACATACGATTGATTCAGAAAATTATTCCATTGATCAGCCGTCTATGAGAGGAGAGGACACACAGCAATGTTTGAGCTCATCAGGAATTTGTGGGGTGATATCCCCAAAATGGTTTTCGTCACCTTGTCCTAGTGCTTGTAGTGAACAGCAGGAGAGGTCTTCAGGACCAGTTAAAAACAACAAGAAGAGGGCTAGACCTGGTGAGACTTCTAGACCTAGGCCGAGGGACAGACAATTAATCCAGGATCGTATTAAGGAACTGCGGGAGCTAACACCAAATGGAGCAAAGTGCAGTATTGATTCACTGCTGGAACGCACAATCAAGCACATGTTATTTCTTCAAAGCATCACTAAACATGCGGATAAACTAAATAAGTGTGCTGATGCAAAGTTGTGTCCCAAGGAAACAAGCATGCTAGGATCTTCTAACTATGAAAGGGGATCGAGCTGGGCAGTGGAGGTGGGAGGCAATCTAAAAGTCTGTTCAATAGTGGTAGAGAATCTGAACAAGAGTGGGCAGATGGTTGTGGAGATGATGTGTGAAGAATGCAGCCATTTCCTTGAGATCGCAGAAGCTATAAGGAGCTTGGGTCTGACAATCTTAAAAGGTGTAACGGAGGCCCGTGGTGACAAGACATGGATATGTTTTATAGTTGAGGGGCAGAACAACAGAAACATACACAGGATGGATATCTTGTGGTCCCTTGTTCAGATACTGCAGCCCAAGAACCCTATGCAACAACAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

728

Amino Acids

80.55

Weight (kDa)

5.92

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	5 - 166	5.4e-39	bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH_LHW	PF23176	548 - 609	2.9e-38	Transcription factor LHW bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06150 AT1G06150 AT2G31280 AT2G31280 AT2G31280
fragaria_vesca	FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810
malus_domestica	MD05G1200100.v1.1 MD10G1186300.v1.1
prunus_persica	Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1
pyrus_communis	pycom05g18670 pycom10g16110 pycom10g16120
rosa_chinensis	RchiOBHm_Chr6g0288541
rosa_laevigata	RLG00000012390
rosa_multiflora	Rmu_sc0002058.1_g000016
rosa_roxburghii	Rroxscaffold_7G00180000
rosa_rugosa	Rorug06G0196800 Rorug06G0196900
rosa_samantha	Rh6AG308800 Rh6BG314200 Rh6CG321500 Rh6DG307300
rosa_wichuraiana	Rw6G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1286
AccB7I	CCANNNNNTGG	2 cut(s)	69, 710
AccIII	TCCGGA	1 cut(s)	595
AciI	CCGC	4 cut(s)	419, 657, 1696, 1793
AclI	AACGTT	1 cut(s)	971
AclWI	GGATC	5 cut(s)	203, 314, 1686, 1861, 1882
AcsI	RAATTY	3 cut(s)	574, 610, 1518
AcuI	CTGAAG	3 cut(s)	98, 740, 1578
AcvI	CACGTG	1 cut(s)	1117
AcyI	GRCGYC	1 cut(s)	1283
AdeI	CACNNNGTG	1 cut(s)	22
AfaI	GTAC	5 cut(s)	7, 353, 432, 874, 1132
AfiI	CCNNNNNNNGG	6 cut(s)	69, 671, 672, 710, 1033, 1542
AflIII	ACRYGT	1 cut(s)	1761
AjnI	CCWGG	3 cut(s)	1108, 1630, 1674
AjuI	GAANNNNNNNTTGG	2 cut(s)	1531, 1563
AleI	CACNNNNGTG	1 cut(s)	1047
Alw21I	GWGCWC	1 cut(s)	1511
Alw26I	GTCTC	2 cut(s)	1392, 1631
AlwI	GGATC	5 cut(s)	203, 314, 1686, 1861, 1882
AlwNI	CAGNNNCTG	3 cut(s)	290, 1390, 2149
Aor13HI	TCCGGA	1 cut(s)	595
AoxI	GGCC	2 cut(s)	1652, 2052
ApeKI	GCWGC	4 cut(s)	192, 891, 1983, 2152
ApoI	RAATTY	3 cut(s)	574, 610, 1518
AseI	ATTAAT	1 cut(s)	1670
AspA2I	CCTAGG	1 cut(s)	1649
AspS9I	GGNCC	4 cut(s)	1178, 1598, 2053, 2133
AsuHPI	GGTGA	6 cut(s)	333, 791, 1540, 1545, 1646, 2072
AsuNHI	GCTAGC	1 cut(s)	220
AvaII	GGWCC	3 cut(s)	1178, 1598, 2133
AvrII	CCTAGG	1 cut(s)	1649
AxyI	CCTNAGG	1 cut(s)	1257
BanII	GRGCYC	2 cut(s)	91, 1511
BbrPI	CACGTG	1 cut(s)	1117
BbsI	GAAGAC	2 cut(s)	903, 1584
Bbv12I	GWGCWC	1 cut(s)	1511
BbvI	GCAGC	4 cut(s)	204, 878, 1995, 2164
BccI	CCATC	4 cut(s)	353, 357, 1948, 2113
BceAI	ACGGC	2 cut(s)	209, 1456
BcgI	CGANNNNNNTGC	4 cut(s)	71, 105, 219, 253
BciT130I	CCWGG	3 cut(s)	1110, 1632, 1676
BciVI	GTATCC	1 cut(s)	1419
BclI	TGATCA	1 cut(s)	1465
BcoDI	GTCTC	2 cut(s)	1392, 1631
BfaI	CTAG	9 cut(s)	221, 534, 1272, 1422, 1563, 1626, 1644, 1650, 1850
BfmI	CTRYAG	2 cut(s)	1317, 2150
BfuI	GTATCC	1 cut(s)	1419
BglI	GCCNNNNNGGC	1 cut(s)	1341
BglII	AGATCT	1 cut(s)	1018
BisI	GCNGC	4 cut(s)	193, 892, 1984, 2153
BlnI	CCTAGG	1 cut(s)	1649
BlsI	GCNGC	4 cut(s)	194, 893, 1985, 2154
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	3 cut(s)	1110, 1632, 1676
Bme18I	GGWCC	3 cut(s)	1178, 1598, 2133
BmgT120I	GGNCC	4 cut(s)	1178, 1598, 2053, 2133
BmiI	GGNNCC	1 cut(s)	2135
BmrFI	CCNGG	3 cut(s)	1110, 1632, 1676
BmrI	ACTGGG	2 cut(s)	300, 661
BmsI	GCATC	6 cut(s)	91, 307, 1242, 1312, 1788, 1807
BmtI	GCTAGC	1 cut(s)	224
BmuI	ACTGGG	2 cut(s)	300, 661
BoxI	GACNNNNGTC	1 cut(s)	398
BpiI	GAAGAC	2 cut(s)	903, 1584
BpmI	CTGGAG	1 cut(s)	197
BpuEI	CTTGAG	3 cut(s)	489, 779, 2015
BsaAI	YACGTR	2 cut(s)	1045, 1117
BsaBI	GATNNNNATC	1 cut(s)	2123
BsaHI	GRCGYC	1 cut(s)	1283
BsaJI	CCNNGG	7 cut(s)	214, 225, 1056, 1649, 1655, 1833, 2056
BsaWI	WCCGGW	1 cut(s)	595
BsaXI	ACNNNNNCTCC	4 cut(s)	1955, 1985, 2008, 2038
Bsc4I	CCNNNNNNNGG	6 cut(s)	69, 671, 672, 710, 1033, 1542
Bse1I	ACTGG	7 cut(s)	180, 295, 667, 715, 1128, 1276, 1601
Bse21I	CCTNAGG	1 cut(s)	1257
Bse3DI	GCAATG	2 cut(s)	182, 1505
Bse8I	GATNNNNATC	1 cut(s)	2123
BseAI	TCCGGA	1 cut(s)	595
BseBI	CCWGG	3 cut(s)	1110, 1632, 1676
BseDI	CCNNGG	7 cut(s)	214, 225, 1056, 1649, 1655, 1833, 2056
BseGI	GGATG	6 cut(s)	368, 764, 912, 1066, 1124, 2124
BseJI	GATNNNNATC	1 cut(s)	2123
BseLI	CCNNNNNNNGG	6 cut(s)	69, 671, 672, 710, 1033, 1542
BseMI	GCAATG	2 cut(s)	182, 1505
BseMII	CTCAG	4 cut(s)	17, 339, 1239, 1248
BseNI	ACTGG	7 cut(s)	180, 295, 667, 715, 1128, 1276, 1601
BseRI	GAGGAG	1 cut(s)	1497
BseXI	GCAGC	4 cut(s)	204, 878, 1995, 2164
BseYI	CCCAGC	2 cut(s)	514, 1881
BsgI	GTGCAG	2 cut(s)	975, 1744
BshFI	GGCC	2 cut(s)	1654, 2054
BsiHKAI	GWGCWC	1 cut(s)	1511
BsiSI	CCGG	1 cut(s)	596
BslFI	GGGAC	4 cut(s)	774, 1673, 1815, 2119
BslI	CCNNNNNNNGG	6 cut(s)	69, 671, 672, 710, 1033, 1542
BsmAI	GTCTC	2 cut(s)	1392, 1631
BsmFI	GGGAC	4 cut(s)	774, 1673, 1815, 2119
BsmI	GAATGC	3 cut(s)	714, 730, 1985
BsnI	GGCC	2 cut(s)	1654, 2054
Bsp1286I	GDGCHC	2 cut(s)	91, 1511
Bsp13I	TCCGGA	1 cut(s)	595
Bsp1407I	TGTACA	2 cut(s)	430, 872
Bsp143I	GATC	8 cut(s)	208, 306, 1018, 1465, 1678, 1853, 1874, 1998
BspACI	CCGC	4 cut(s)	419, 657, 1696, 1793
BspANI	GGCC	2 cut(s)	1654, 2054
BspCNI	CTCAG	4 cut(s)	18, 340, 1240, 1249
BspEI	TCCGGA	1 cut(s)	595
BspLI	GGNNCC	1 cut(s)	2135
BspMAI	CTGCAG	1 cut(s)	2154
BspOI	GCTAGC	1 cut(s)	224
BspPI	GGATC	5 cut(s)	203, 314, 1686, 1861, 1882
BsrDI	GCAATG	2 cut(s)	182, 1505
BsrGI	TGTACA	2 cut(s)	430, 872
BsrI	ACTGG	7 cut(s)	180, 295, 667, 715, 1128, 1276, 1601
BssECI	CCNNGG	7 cut(s)	214, 225, 1056, 1649, 1655, 1833, 2056
BssMI	GATC	8 cut(s)	208, 306, 1018, 1465, 1678, 1853, 1874, 1998
BssNI	GRCGYC	1 cut(s)	1283
BssT1I	CCWWGG	4 cut(s)	214, 1056, 1649, 1833
Bst2UI	CCWGG	3 cut(s)	1110, 1632, 1676
Bst4CI	ACNGT	7 cut(s)	131, 338, 345, 356, 545, 683, 1013
Bst6I	CTCTTC	1 cut(s)	1613
BstACI	GRCGYC	1 cut(s)	1283
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstAUI	TGTACA	2 cut(s)	430, 872
BstBAI	YACGTR	2 cut(s)	1045, 1117
BstC8I	GCNNGC	5 cut(s)	222, 385, 605, 1153, 1847
BstDEI	CTNAG	4 cut(s)	26, 348, 1248, 1257
BstDSI	CCRYGG	2 cut(s)	225, 2056
BstF5I	GGATG	6 cut(s)	368, 764, 912, 1066, 1124, 2124
BstKTI	GATC	8 cut(s)	211, 309, 1021, 1468, 1681, 1856, 1877, 2001
BstMAI	GTCTC	2 cut(s)	1392, 1631
BstMBI	GATC	8 cut(s)	208, 306, 1018, 1465, 1678, 1853, 1874, 1998
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 1322, 1341
BstNI	CCWGG	3 cut(s)	1110, 1632, 1676
BstNSI	RCATGY	3 cut(s)	1765, 1793, 1849
BstPAI	GACNNNNGTC	1 cut(s)	398
BstSCI	CCNGG	3 cut(s)	1108, 1630, 1674
BstSFI	CTRYAG	2 cut(s)	1317, 2150
BstV1I	GCAGC	4 cut(s)	204, 878, 1995, 2164
BstV2I	GAAGAC	2 cut(s)	903, 1584
BstX2I	RGATCY	3 cut(s)	306, 1018, 1853
BstYI	RGATCY	3 cut(s)	306, 1018, 1853
Bsu36I	CCTNAGG	1 cut(s)	1257
BsuI	GTATCC	1 cut(s)	1419
BsuRI	GGCC	2 cut(s)	1654, 2054
BtgI	CCRYGG	2 cut(s)	225, 2056
BtsCI	GGATG	6 cut(s)	368, 764, 912, 1066, 1124, 2124
BtsI	GCAGTG	2 cut(s)	1736, 1893
BtsIMutI	CAGTG	6 cut(s)	173, 308, 456, 688, 1736, 1893
Cac8I	GCNNGC	5 cut(s)	222, 385, 605, 1153, 1847
CaiI	CAGNNNCTG	3 cut(s)	290, 1390, 2149
Cfr13I	GGNCC	4 cut(s)	1178, 1598, 2053, 2133
CseI	GACGC	1 cut(s)	122
CsiI	ACCWGGT	2 cut(s)	1108, 1630
Csp6I	GTAC	5 cut(s)	6, 352, 431, 873, 1131
CviQI	GTAC	5 cut(s)	6, 352, 431, 873, 1131
DdeI	CTNAG	4 cut(s)	26, 348, 1248, 1257
DpnI	GATC	8 cut(s)	210, 308, 1020, 1467, 1680, 1855, 1876, 2000
DpnII	GATC	8 cut(s)	208, 306, 1018, 1465, 1678, 1853, 1874, 1998
DraI	TTTAAA	1 cut(s)	447
DraIII	CACNNNGTG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	1613
EarI	CTCTTC	1 cut(s)	1613
Ecl136II	GAGCTC	1 cut(s)	1509
Eco130I	CCWWGG	4 cut(s)	214, 1056, 1649, 1833
Eco24I	GRGCYC	2 cut(s)	91, 1511
Eco32I	GATATC	2 cut(s)	1533, 2125
Eco47I	GGWCC	3 cut(s)	1178, 1598, 2133
Eco53kI	GAGCTC	1 cut(s)	1509
Eco57I	CTGAAG	3 cut(s)	98, 740, 1578
Eco72I	CACGTG	1 cut(s)	1117
Eco81I	CCTNAGG	1 cut(s)	1257
EcoICRI	GAGCTC	1 cut(s)	1509
EcoRII	CCWGG	3 cut(s)	1108, 1630, 1674
EcoRV	GATATC	2 cut(s)	1533, 2125
EcoT14I	CCWWGG	4 cut(s)	214, 1056, 1649, 1833
EcoT38I	GRGCYC	2 cut(s)	91, 1511
ErhI	CCWWGG	4 cut(s)	214, 1056, 1649, 1833
FalI	AAGNNNNNCTT	2 cut(s)	1187, 1219
FaqI	GGGAC	4 cut(s)	774, 1673, 1815, 2119
FauI	CCCGC	1 cut(s)	1689
FbaI	TGATCA	1 cut(s)	1465
Fnu4HI	GCNGC	4 cut(s)	193, 892, 1984, 2153
FokI	GGATG	6 cut(s)	375, 751, 919, 1073, 1111, 2131
FriOI	GRGCYC	2 cut(s)	91, 1511
Fsp4HI	GCNGC	4 cut(s)	193, 892, 1984, 2153
FspBI	CTAG	9 cut(s)	221, 534, 1272, 1422, 1563, 1626, 1644, 1650, 1850
GluI	GCNGC	4 cut(s)	193, 892, 1984, 2153
GsaI	CCCAGC	2 cut(s)	518, 1885
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	1654, 2054
HapII	CCGG	1 cut(s)	596
HgaI	GACGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	1283
HincII	GTYRAC	3 cut(s)	979, 1281, 1395
HindII	GTYRAC	3 cut(s)	979, 1281, 1395
HinfI	GANTC	6 cut(s)	761, 787, 1289, 1445, 1733, 1933
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	6 cut(s)	333, 791, 1540, 1545, 1646, 2072
Hpy166II	GTNNAC	7 cut(s)	341, 979, 1052, 1120, 1281, 1395, 1577
Hpy188III	TCNNGA	9 cut(s)	70, 506, 585, 596, 1310, 1412, 1515, 1596, 1644
Hpy8I	GTNNAC	7 cut(s)	341, 979, 1052, 1120, 1281, 1395, 1577
HpyAV	CCTTC	2 cut(s)	257, 1428
HpyCH4III	ACNGT	7 cut(s)	131, 338, 345, 356, 545, 683, 1013
HpyCH4IV	ACGT	4 cut(s)	971, 1044, 1116, 1283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 1322, 1341
HpyF3I	CTNAG	4 cut(s)	26, 348, 1248, 1257
HpySE526I	ACGT	4 cut(s)	971, 1044, 1116, 1283
Hsp92I	GRCGYC	1 cut(s)	1283
Kpn2I	TCCGGA	1 cut(s)	595
Ksp22I	TGATCA	1 cut(s)	1465
Kzo9I	GATC	8 cut(s)	208, 306, 1018, 1465, 1678, 1853, 1874, 1998
LmnI	GCTCC	3 cut(s)	1699, 1715, 2016
Lsp1109I	GCAGC	4 cut(s)	204, 878, 1995, 2164
LweI	GCATC	6 cut(s)	91, 307, 1242, 1312, 1788, 1807
MabI	ACCWGGT	2 cut(s)	1108, 1630
MaeI	CTAG	9 cut(s)	221, 534, 1272, 1422, 1563, 1626, 1644, 1650, 1850
MaeII	ACGT	4 cut(s)	971, 1044, 1116, 1283
MaeIII	GTNAC	6 cut(s)	286, 1112, 1199, 1551, 2044, 2060
MalI	GATC	8 cut(s)	210, 308, 1020, 1467, 1680, 1855, 1876, 2000
MboI	GATC	8 cut(s)	208, 306, 1018, 1465, 1678, 1853, 1874, 1998
MflI	RGATCY	3 cut(s)	306, 1018, 1853
MhlI	GDGCHC	2 cut(s)	91, 1511
MlyI	GAGTC	2 cut(s)	770, 796
MmeI	TCCRAC	4 cut(s)	253, 792, 807, 1124
MroI	TCCGGA	1 cut(s)	595
MseI	TTAA	9 cut(s)	168, 446, 1002, 1065, 1353, 1605, 1670, 1686, 2036
MslI	CAYNNNNRTG	4 cut(s)	945, 1047, 1498, 2074
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	596
MspR9I	CCNGG	3 cut(s)	1110, 1632, 1676
Mva1269I	GAATGC	3 cut(s)	714, 730, 1985
MvaI	CCWGG	3 cut(s)	1110, 1632, 1676
MwoI	GCNNNNNNNGC	3 cut(s)	22, 1322, 1341
NdeII	GATC	8 cut(s)	208, 306, 1018, 1465, 1678, 1853, 1874, 1998
NheI	GCTAGC	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	2135
NmeAIII	GCCGAG	1 cut(s)	1680
NmuCI	GTSAC	3 cut(s)	1112, 1551, 2060
NspI	RCATGY	3 cut(s)	1765, 1793, 1849
OliI	CACNNNNGTG	1 cut(s)	1047
PaeI	GCATGC	1 cut(s)	1849
PciI	ACATGT	1 cut(s)	1761
PctI	GAATGC	3 cut(s)	714, 730, 1985
PfeI	GAWTC	4 cut(s)	1289, 1445, 1733, 1933
PflMI	CCANNNNNTGG	2 cut(s)	69, 710
PfoI	TCCNGGA	1 cut(s)	1674
PkrI	GCNGC	4 cut(s)	194, 893, 1985, 2154
PleI	GAGTC	2 cut(s)	769, 795
PmaCI	CACGTG	1 cut(s)	1117
PmlI	CACGTG	1 cut(s)	1117
PpsI	GAGTC	2 cut(s)	769, 795
Ppu21I	YACGTR	2 cut(s)	1045, 1117
PscI	ACATGT	1 cut(s)	1761
PshAI	GACNNNNGTC	1 cut(s)	398
PshBI	ATTAAT	1 cut(s)	1670
Psp124BI	GAGCTC	1 cut(s)	1511
Psp1406I	AACGTT	1 cut(s)	971
Psp6I	CCWGG	3 cut(s)	1108, 1630, 1674
PspCI	CACGTG	1 cut(s)	1117
PspFI	CCCAGC	2 cut(s)	514, 1881
PspGI	CCWGG	3 cut(s)	1108, 1630, 1674
PspN4I	GGNNCC	1 cut(s)	2135
PspPI	GGNCC	4 cut(s)	1178, 1598, 2053, 2133
PsrI	GAACNNNNNNTAC	2 cut(s)	399, 431
PstI	CTGCAG	1 cut(s)	2154
PstNI	CAGNNNCTG	3 cut(s)	290, 1390, 2149
PsuI	RGATCY	3 cut(s)	306, 1018, 1853
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	5 cut(s)	7, 353, 432, 874, 1132
RsaNI	GTAC	5 cut(s)	6, 352, 431, 873, 1131
RseI	CAYNNNNRTG	4 cut(s)	945, 1047, 1498, 2074
SacI	GAGCTC	1 cut(s)	1511
SaqAI	TTAA	9 cut(s)	168, 446, 1002, 1065, 1353, 1605, 1670, 1686, 2036
SatI	GCNGC	4 cut(s)	193, 892, 1984, 2153
Sau3AI	GATC	8 cut(s)	208, 306, 1018, 1465, 1678, 1853, 1874, 1998
Sau96I	GGNCC	4 cut(s)	1178, 1598, 2053, 2133
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	2 cut(s)	770, 796
ScrFI	CCNGG	3 cut(s)	1110, 1632, 1676
SduI	GDGCHC	2 cut(s)	91, 1511
SexAI	ACCWGGT	2 cut(s)	1108, 1630
SfaNI	GCATC	6 cut(s)	91, 307, 1242, 1312, 1788, 1807
SfcI	CTRYAG	2 cut(s)	1317, 2150
SinI	GGWCC	3 cut(s)	1178, 1598, 2133
SmiMI	CAYNNNNRTG	4 cut(s)	945, 1047, 1498, 2074
SmlI	CTYRAG	3 cut(s)	504, 758, 1994
SmoI	CTYRAG	3 cut(s)	504, 758, 1994
SphI	GCATGC	1 cut(s)	1849
SsiI	CCGC	4 cut(s)	419, 657, 1696, 1793
SspMI	CTAG	9 cut(s)	221, 534, 1272, 1422, 1563, 1626, 1644, 1650, 1850
SstI	GAGCTC	1 cut(s)	1511
StyD4I	CCNGG	3 cut(s)	1108, 1630, 1674
StyI	CCWWGG	4 cut(s)	214, 1056, 1649, 1833
TaaI	ACNGT	7 cut(s)	131, 338, 345, 356, 545, 683, 1013
TaiI	ACGT	4 cut(s)	974, 1047, 1119, 1286
TaqI	TCGA	2 cut(s)	91, 1877
TatI	WGTACW	4 cut(s)	351, 430, 872, 1130
TfiI	GAWTC	4 cut(s)	1289, 1445, 1733, 1933
Tru1I	TTAA	9 cut(s)	168, 446, 1002, 1065, 1353, 1605, 1670, 1686, 2036
Tru9I	TTAA	9 cut(s)	168, 446, 1002, 1065, 1353, 1605, 1670, 1686, 2036
TscAI	CASTG	6 cut(s)	180, 308, 463, 688, 1743, 1893
TseFI	GTSAC	3 cut(s)	1112, 1551, 2060
TseI	GCWGC	4 cut(s)	192, 891, 1983, 2152
Tsp45I	GTSAC	3 cut(s)	1112, 1551, 2060
TspDTI	ATGAA	4 cut(s)	1182, 1205, 1280, 1881
TspGWI	ACGGA	2 cut(s)	62, 2063
TspRI	CASTG	6 cut(s)	180, 308, 463, 688, 1743, 1893
Van91I	CCANNNNNTGG	2 cut(s)	69, 710
VpaK11BI	GGWCC	3 cut(s)	1178, 1598, 2133
VspI	ATTAAT	1 cut(s)	1670
XapI	RAATTY	3 cut(s)	574, 610, 1518
XbaI	TCTAGA	1 cut(s)	1643
XceI	RCATGY	3 cut(s)	1765, 1793, 1849
XmaJI	CCTAGG	1 cut(s)	1649
XspI	CTAG	9 cut(s)	221, 534, 1272, 1422, 1563, 1626, 1644, 1650, 1850
ZraI	GACGTC	1 cut(s)	1284
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.