Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003837

Physical Location & Seq

Genomic Coordinates Forward (+)

19303696 .. 19305391

Gene Structure 1696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16120.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGACACATCTAGTACATCAATGGCCTTCCCTGCTGGCTGTGAGCTGCATGAAGCACTTGGACCAGCTTTTCTGAATCAGGGTAACTATTTTGATTGGGTAGCGGGGAAGAATGGAGATAGAATTACTCCTGAGATACCTGAGGGGATGAACACTAGCCAGTTGACATCCGATTCTTGTCAAGAGCATCTTCTTGAAGCAGTAGTGGCTAATGTTTGCCAAAGTGGCAGTCTTGTTAAAAATGAAAAATCATTCTGTAAATCAAAGCAGTCCCTTTTGACAACTGAAAAATATCCAGAGCCTTCTGGCCGTATTACCCATACAATTGATTCTGAAAATTTTTCTATTGATCAGCCTTCTCTTACTGGAGAGGACATGCAGCAATGCTTGAGCTCATCAGGGGTTTGCGGGGTGATATCTCCAAAATGGTTTTCATCACCTTGTCCTAGTGCTTGTAGTGAGCAGCCGGAGAGGTCTTCTGGACTGTCCAAAAATAGCAAGAAGAGGGCAAGACCTGGTGAAAGTTCTAGACCTAGGCCAAGGGACCGGCAATTGATCCAAGATCGTATTAAGGAACTGCGGGAGCTAATACCTACTGGAGCAAAGTGCAGTATTGATTCACTGCTGGAGCGCACAATCAAGCACATGCTCTTTCTACAAAGCGTCACTAAGCATGCTGACAAACTAAATAAATGTGCTGATGCAAAGTTGTGTCCGAAGGAAGCAAGCATGCTAGGATCCTCCAATTATGAACGTGGATCAAGCTGGGCAGTGGAGGTGGGTGGCAATCTGAAAGTTTGTTCAATAATAGTGGAGAATCTCAACAAGAATGGACAGATGGTTGTAGAGCTGATGTGTGAAGAATGCAGTCATTTTCTAGAGATAGCTGAGGCTATCAGGTGCTCAGGTCTGACAATCTTAAAAGGTGTGACGGAAGCCCGTGGTGACAAGACATGGATATGTTTTGTGGTTGAGGGGCAAAACAACAGAAGCATACACAGAATGGATATCTTATGGTCTCTTGTTCAGATATTACAGCCCAAGAATCCTACGCAACAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

355

Amino Acids

39.01

Weight (kDa)

6.41

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06150 AT1G06150 AT2G31280 AT2G31280 AT2G31280
fragaria_vesca	FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810
malus_domestica	MD05G1200100.v1.1 MD10G1186300.v1.1
prunus_persica	Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1
pyrus_communis	pycom05g18670 pycom10g16110 pycom10g16120
rosa_chinensis	RchiOBHm_Chr6g0288541
rosa_laevigata	RLG00000012390
rosa_multiflora	Rmu_sc0002058.1_g000016
rosa_roxburghii	Rroxscaffold_7G00180000
rosa_rugosa	Rorug06G0196800 Rorug06G0196900
rosa_samantha	Rh6AG308800 Rh6BG314200 Rh6CG321500 Rh6DG307300
rosa_wichuraiana	Rw6G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	104, 408, 580
AclWI	GGATC	4 cut(s)	550, 732, 745, 766
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	197, 804
AjnI	CCWGG	1 cut(s)	514
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	8 cut(s)	46, 68, 393, 586, 765, 850, 887, 1060
AluI	AGCT	8 cut(s)	46, 68, 393, 586, 765, 850, 887, 1060
Alw21I	GWGCWC	2 cut(s)	395, 905
Alw26I	GTCTC	1 cut(s)	1023
AlwI	GGATC	4 cut(s)	550, 732, 745, 766
AoxI	GGCC	3 cut(s)	24, 307, 536
ApeKI	GCWGC	3 cut(s)	46, 379, 463
ApoI	RAATTY	1 cut(s)	337
ArsI	GACNNNNNNTTYG	2 cut(s)	214, 246
AspA2I	CCTAGG	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	2 cut(s)	62, 544
AsuHPI	GGTGA	4 cut(s)	424, 429, 530, 956
AvaII	GGWCC	2 cut(s)	62, 544
AvrII	CCTAGG	1 cut(s)	533
AxyI	CCTNAGG	1 cut(s)	141
BamHI	GGATCC	1 cut(s)	737
BanII	GRGCYC	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	468
Bbv12I	GWGCWC	2 cut(s)	395, 905
BbvCI	CCTCAGC	1 cut(s)	888
BbvI	GCAGC	3 cut(s)	33, 391, 475
BccI	CCATC	1 cut(s)	832
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	516
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	1023
BfaI	CTAG	7 cut(s)	12, 156, 447, 528, 534, 734, 878
BglI	GCCNNNNNGGC	1 cut(s)	225
BisI	GCNGC	3 cut(s)	47, 380, 464
BlnI	CCTAGG	1 cut(s)	533
BlsI	GCNGC	3 cut(s)	48, 381, 465
Bme1390I	CCNGG	1 cut(s)	516
Bme18I	GGWCC	2 cut(s)	62, 544
BmgT120I	GGNCC	2 cut(s)	62, 544
BmiI	GGNNCC	2 cut(s)	545, 739
BmrFI	CCNGG	1 cut(s)	516
BmsI	GCATC	2 cut(s)	196, 691
BpiI	GAAGAC	1 cut(s)	468
BpmI	CTGGAG	3 cut(s)	387, 618, 647
Bpu10I	CCTNAGC	2 cut(s)	888, 904
BpuEI	CTTGAG	1 cut(s)	409
BsaI	GGTCTC	1 cut(s)	1023
BsaJI	CCNNGG	3 cut(s)	533, 539, 940
Bse118I	RCCGGY	1 cut(s)	546
Bse1I	ACTGG	3 cut(s)	160, 370, 601
Bse21I	CCTNAGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	3 cut(s)	533, 539, 940
BseGI	GGATG	2 cut(s)	153, 167
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	4 cut(s)	123, 132, 879, 918
BseNI	ACTGG	3 cut(s)	160, 370, 601
BseXI	GCAGC	3 cut(s)	33, 391, 475
BseYI	CCCAGC	1 cut(s)	765
BsgI	GTGCAG	1 cut(s)	628
BshFI	GGCC	3 cut(s)	26, 309, 538
BsiHKAI	GWGCWC	2 cut(s)	395, 905
BsiSI	CCGG	2 cut(s)	467, 547
BslFI	GGGAC	2 cut(s)	256, 557
BsmAI	GTCTC	1 cut(s)	1023
BsmFI	GGGAC	2 cut(s)	256, 557
BsmI	GAATGC	1 cut(s)	869
BsnI	GGCC	3 cut(s)	26, 309, 538
Bso31I	GGTCTC	1 cut(s)	1023
Bsp1286I	GDGCHC	2 cut(s)	395, 905
Bsp143I	GATC	5 cut(s)	349, 555, 562, 737, 758
BspACI	CCGC	3 cut(s)	104, 408, 580
BspANI	GGCC	3 cut(s)	26, 309, 538
BspCNI	CTCAG	4 cut(s)	124, 133, 880, 917
BspLI	GGNNCC	2 cut(s)	545, 739
BspPI	GGATC	4 cut(s)	550, 732, 745, 766
BspTNI	GGTCTC	1 cut(s)	1023
BsrDI	GCAATG	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	546
BsrI	ACTGG	3 cut(s)	160, 370, 601
BssAI	RCCGGY	1 cut(s)	546
BssECI	CCNNGG	3 cut(s)	533, 539, 940
BssMI	GATC	5 cut(s)	349, 555, 562, 737, 758
BssT1I	CCWWGG	2 cut(s)	533, 539
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	1 cut(s)	486
Bst6I	CTCTTC	1 cut(s)	497
BstC8I	GCNNGC	4 cut(s)	37, 675, 727, 731
BstDEI	CTNAG	5 cut(s)	132, 141, 669, 888, 904
BstDSI	CCRYGG	1 cut(s)	940
BstF5I	GGATG	2 cut(s)	153, 167
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	5 cut(s)	352, 558, 565, 740, 761
BstMAI	GTCTC	1 cut(s)	1023
BstMBI	GATC	5 cut(s)	349, 555, 562, 737, 758
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 206, 225
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	4 cut(s)	379, 649, 677, 733
BstSCI	CCNGG	1 cut(s)	514
BstV1I	GCAGC	3 cut(s)	33, 391, 475
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	1 cut(s)	737
BstYI	RGATCY	1 cut(s)	737
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	26, 309, 538
BtgI	CCRYGG	1 cut(s)	940
BtsCI	GGATG	2 cut(s)	153, 167
BtsI	GCAGTG	2 cut(s)	620, 777
BtsIMutI	CAGTG	2 cut(s)	620, 777
Cac8I	GCNNGC	4 cut(s)	37, 675, 727, 731
CfoI	GCGC	1 cut(s)	633
Cfr10I	RCCGGY	1 cut(s)	546
Cfr13I	GGNCC	2 cut(s)	62, 544
CseI	GACGC	1 cut(s)	652
CsiI	ACCWGGT	1 cut(s)	514
Csp6I	GTAC	1 cut(s)	15
CspCI	CAANNNNNGTGG	2 cut(s)	792, 827
CviAII	CATG	6 cut(s)	50, 376, 646, 674, 730, 954
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	5 cut(s)	132, 141, 669, 888, 904
DpnI	GATC	5 cut(s)	351, 557, 564, 739, 760
DpnII	GATC	5 cut(s)	349, 555, 562, 737, 758
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Ecl136II	GAGCTC	1 cut(s)	393
Eco130I	CCWWGG	2 cut(s)	533, 539
Eco24I	GRGCYC	1 cut(s)	395
Eco31I	GGTCTC	1 cut(s)	1023
Eco32I	GATATC	2 cut(s)	417, 1009
Eco47I	GGWCC	2 cut(s)	62, 544
Eco53kI	GAGCTC	1 cut(s)	393
Eco81I	CCTNAGG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	514
EcoRV	GATATC	2 cut(s)	417, 1009
EcoT14I	CCWWGG	2 cut(s)	533, 539
EcoT38I	GRGCYC	1 cut(s)	395
ErhI	CCWWGG	2 cut(s)	533, 539
FaeI	CATG	6 cut(s)	53, 379, 649, 677, 733, 957
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	2 cut(s)	256, 557
FatI	CATG	6 cut(s)	49, 375, 645, 673, 729, 953
FauI	CCCGC	3 cut(s)	97, 401, 573
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	47, 380, 464
FokI	GGATG	2 cut(s)	154, 160
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	3 cut(s)	47, 380, 464
FspBI	CTAG	7 cut(s)	12, 156, 447, 528, 534, 734, 878
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	3 cut(s)	47, 380, 464
GsaI	CCCAGC	1 cut(s)	769
GsuI	CTGGAG	3 cut(s)	387, 618, 647
HaeIII	GGCC	3 cut(s)	26, 309, 538
HapII	CCGG	2 cut(s)	467, 547
HgaI	GACGC	1 cut(s)	652
HhaI	GCGC	1 cut(s)	633
Hin1II	CATG	6 cut(s)	53, 379, 649, 677, 733, 957
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	6 cut(s)	76, 173, 329, 617, 817, 1045
HpaII	CCGG	2 cut(s)	467, 547
HphI	GGTGA	4 cut(s)	424, 429, 530, 956
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	7 cut(s)	75, 172, 334, 717, 792, 912, 1029
Hpy188III	TCNNGA	7 cut(s)	131, 182, 194, 296, 480, 528, 878
Hpy8I	GTNNAC	1 cut(s)	165
HpyAV	CCTTC	4 cut(s)	37, 312, 366, 712
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4IV	ACGT	1 cut(s)	754
HpyCH4V	TGCA	5 cut(s)	49, 379, 609, 704, 867
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 206, 225
HpyF3I	CTNAG	5 cut(s)	132, 141, 669, 888, 904
HpySE526I	ACGT	1 cut(s)	754
Hsp92II	CATG	6 cut(s)	53, 379, 649, 677, 733, 957
HspAI	GCGC	1 cut(s)	631
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	5 cut(s)	349, 555, 562, 737, 758
LmnI	GCTCC	3 cut(s)	583, 599, 628
Lsp1109I	GCAGC	3 cut(s)	33, 391, 475
LweI	GCATC	2 cut(s)	196, 691
MabI	ACCWGGT	1 cut(s)	514
MaeI	CTAG	7 cut(s)	12, 156, 447, 528, 534, 734, 878
MaeII	ACGT	1 cut(s)	754
MaeIII	GTNAC	4 cut(s)	83, 664, 928, 944
MalI	GATC	5 cut(s)	351, 557, 564, 739, 760
MboI	GATC	5 cut(s)	349, 555, 562, 737, 758
MboII	GAAGA	5 cut(s)	121, 182, 468, 514, 872
MfeI	CAATTG	2 cut(s)	324, 551
MflI	RGATCY	1 cut(s)	737
MhlI	GDGCHC	2 cut(s)	395, 905
MluCI	AATT	5 cut(s)	123, 324, 337, 551, 745
MnlI	CCTC	8 cut(s)	136, 364, 465, 498, 751, 769, 883, 967
MseI	TTAA	3 cut(s)	237, 570, 920
MslI	CAYNNNNRTG	1 cut(s)	958
MspI	CCGG	2 cut(s)	467, 547
MspR9I	CCNGG	1 cut(s)	516
MunI	CAATTG	2 cut(s)	324, 551
Mva1269I	GAATGC	1 cut(s)	869
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	3 cut(s)	32, 206, 225
NdeII	GATC	5 cut(s)	349, 555, 562, 737, 758
NlaIII	CATG	6 cut(s)	53, 379, 649, 677, 733, 957
NlaIV	GGNNCC	2 cut(s)	545, 739
NmuCI	GTSAC	3 cut(s)	664, 928, 944
NspI	RCATGY	4 cut(s)	379, 649, 677, 733
PaeI	GCATGC	2 cut(s)	677, 733
PctI	GAATGC	1 cut(s)	869
PfeI	GAWTC	6 cut(s)	76, 173, 329, 617, 817, 1045
PkrI	GCNGC	3 cut(s)	48, 381, 465
Psp124BI	GAGCTC	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	514
PspFI	CCCAGC	1 cut(s)	765
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	2 cut(s)	545, 739
PspPI	GGNCC	2 cut(s)	62, 544
PsuI	RGATCY	1 cut(s)	737
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	958
SacI	GAGCTC	1 cut(s)	395
SaqAI	TTAA	3 cut(s)	237, 570, 920
SatI	GCNGC	3 cut(s)	47, 380, 464
Sau3AI	GATC	5 cut(s)	349, 555, 562, 737, 758
Sau96I	GGNCC	2 cut(s)	62, 544
ScrFI	CCNGG	1 cut(s)	516
SduI	GDGCHC	2 cut(s)	395, 905
SexAI	ACCWGGT	1 cut(s)	514
SfaNI	GCATC	2 cut(s)	196, 691
SinI	GGWCC	2 cut(s)	62, 544
SmiMI	CAYNNNNRTG	1 cut(s)	958
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
SphI	GCATGC	2 cut(s)	677, 733
Sse9I	AATT	5 cut(s)	123, 324, 337, 551, 745
SsiI	CCGC	3 cut(s)	104, 408, 580
SspMI	CTAG	7 cut(s)	12, 156, 447, 528, 534, 734, 878
SstI	GAGCTC	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	514
StyI	CCWWGG	2 cut(s)	533, 539
TaaI	ACNGT	1 cut(s)	486
TaiI	ACGT	1 cut(s)	757
TasI	AATT	5 cut(s)	123, 324, 337, 551, 745
TatI	WGTACW	1 cut(s)	14
TfiI	GAWTC	6 cut(s)	76, 173, 329, 617, 817, 1045
Tru1I	TTAA	3 cut(s)	237, 570, 920
Tru9I	TTAA	3 cut(s)	237, 570, 920
TscAI	CASTG	2 cut(s)	627, 777
TseFI	GTSAC	3 cut(s)	664, 928, 944
TseI	GCWGC	3 cut(s)	46, 379, 463
Tsp45I	GTSAC	3 cut(s)	664, 928, 944
TspDTI	ATGAA	5 cut(s)	66, 164, 258, 423, 765
TspGWI	ACGGA	1 cut(s)	947
TspRI	CASTG	2 cut(s)	627, 777
VpaK11BI	GGWCC	2 cut(s)	62, 544
XapI	RAATTY	1 cut(s)	337
XbaI	TCTAGA	2 cut(s)	527, 877
XceI	RCATGY	4 cut(s)	379, 649, 677, 733
XmaJI	CCTAGG	1 cut(s)	533
XspI	CTAG	7 cut(s)	12, 156, 447, 528, 534, 734, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.