Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003837

Physical Location & Seq

Genomic Coordinates Reverse (-)

31708935 .. 31712272

Gene Structure 3338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0196900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTACAGCAGGCTAATGGAAGAAGATCAAGCTAAATCGGTAGGCTTACCACGTGCTGCTGCCCTCCTCAAACCTGATAATATAGATTCAATGGAAGTGTGGTTGGATTTTGTAAAATCCAGAACCACAGAAGCATTTAGGGAAAAGTGTGAAAGATTCAGGTTGATGCGACAAGGCAGAACCTTATTGCATAGAACAAGTAGAAAGAGTTTTGCATGTCTTGAAGAAGAGCTGAAGCAACAAAGTGAGACACCAGATGCAATATCAAGGTCCGATATTTGGCTTCGTGCCTATGAAGTGAAGAAAAAAGCAGGTGAAGAAGTTGAGGATCCGGAAATAGTGAAACTAGTACGAAAGTACAAGGAAGAAGAAGAAGTAACACAACCATTTTCGATAAAAACTGATGTTGTTGCCAAGGCACTTGGTCCTGACCCACGAGGAAGAGTTAGAGGACTTAGGTTTGGTGCACTCTCTTCAAAAGTGGATGGTCAGACACACGTTTCTAATAAGGTCACTATGCTAGAGAACGCTCTTGCTGCTCAAACACAACAGGTGGACCGATTGACAGAGTTAGTGCAAGGTCTCGTTGCTCGGCTAGACAAAGGAGAGAATGTCAATGAAAACACAAGCAGTGTGCAACATTCTGCTAATTGGATTGCACAGAGAAAACGAAAAGAGAATCTGAACTGCTCTAGTGATATAGCACAAAGCAAGCAGAAAGATGCTAGTGTTATAAGTTCTAACGGGGAGAGGGGCAGTAGAGAGCAAATCAAACAAAATACCTACGGAAAGGAGCCACATTTGGGAAATGGTAGGCCAAAAAAGAGCCAAAAGACAGATGCAGCGGAAAAAGTGTACTTGCTAAGTTGGTTTGCTAAAGAAGAAGAAGTCGTTGCTACTGGTGGGATTTTGTCAAAAGATCCAGAAGCTTTGGTGCATCATGTGCCTCTAGGCCATGATTGTTGGAAAATTTCAGTGCATGAAGTTTTTTATGATATAGCTTTGTATCCACTGACAAGTGAGTTCAATAAGCTTGATGCATCTAGAGGAAGTGTAATCGCATGGCCTATCAAATATATCAAGGTGAATTCGCCTGTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

367

Amino Acids

41.46

Weight (kDa)

8.8

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	31 - 154	9.9e-11	Plant transposase (Ptta/En/Spm family)
DUF8039	PF26133	292 - 362	4.1e-08	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06150 AT1G06150 AT2G31280 AT2G31280 AT2G31280
fragaria_vesca	FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810 FvH4_2g21810
malus_domestica	MD05G1200100.v1.1 MD10G1186300.v1.1
prunus_persica	Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1 Prupe.8G225900_v2.0.a1
pyrus_communis	pycom05g18670 pycom10g16110 pycom10g16120
rosa_chinensis	RchiOBHm_Chr6g0288541
rosa_laevigata	RLG00000012390
rosa_multiflora	Rmu_sc0002058.1_g000016
rosa_roxburghii	Rroxscaffold_7G00180000
rosa_rugosa	Rorug06G0196800 Rorug06G0196900
rosa_samantha	Rh6AG308800 Rh6BG314200 Rh6CG321500 Rh6DG307300
rosa_wichuraiana	Rw6G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AarI	CACCTGC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	302
AccIII	TCCGGA	1 cut(s)	331
AciI	CCGC	1 cut(s)	845
AclWI	GGATC	3 cut(s)	323, 336, 914
AcsI	RAATTY	2 cut(s)	969, 1087
AcuI	CTGAAG	1 cut(s)	254
AcvI	CACGTG	1 cut(s)	53
AfaI	GTAC	4 cut(s)	5, 351, 359, 857
AfiI	CCNNNNNNNGG	2 cut(s)	279, 803
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	4 cut(s)	90, 224, 477, 1027
AhlI	ACTAGT	1 cut(s)	346
AluBI	AGCT	5 cut(s)	32, 232, 929, 1001, 1033
AluI	AGCT	5 cut(s)	32, 232, 929, 1001, 1033
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	2 cut(s)	242, 587
Alw44I	GTGCAC	1 cut(s)	465
AlwI	GGATC	3 cut(s)	323, 336, 914
Aor13HI	TCCGGA	1 cut(s)	331
AoxI	GGCC	3 cut(s)	815, 952, 1064
ApaLI	GTGCAC	1 cut(s)	465
ApeKI	GCWGC	4 cut(s)	56, 59, 536, 842
ApoI	RAATTY	2 cut(s)	969, 1087
AspS9I	GGNCC	3 cut(s)	270, 425, 556
AsuHPI	GGTGA	2 cut(s)	326, 1096
AvaII	GGWCC	3 cut(s)	270, 425, 556
BaeGI	GKGCMC	1 cut(s)	469
BamHI	GGATCC	1 cut(s)	328
BauI	CACGAG	1 cut(s)	435
BbrPI	CACGTG	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	4 cut(s)	43, 46, 523, 854
BccI	CCATC	1 cut(s)	479
BciVI	GTATCC	1 cut(s)	1017
BcoDI	GTCTC	2 cut(s)	242, 587
BcuI	ACTAGT	1 cut(s)	346
BfaI	CTAG	7 cut(s)	347, 521, 596, 693, 726, 950, 1044
BfuAI	ACCTGC	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	1017
BisI	GCNGC	4 cut(s)	57, 60, 537, 843
BlsI	GCNGC	4 cut(s)	58, 61, 538, 844
Bme18I	GGWCC	3 cut(s)	270, 425, 556
BmgT120I	GGNCC	3 cut(s)	270, 425, 556
BmiI	GGNNCC	2 cut(s)	330, 795
BmsI	GCATC	7 cut(s)	156, 247, 712, 829, 946, 1027, 1049
BsaAI	YACGTR	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	587
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 803
Bse1I	ACTGG	1 cut(s)	904
BseAI	TCCGGA	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	2 cut(s)	279, 803
BseNI	ACTGG	1 cut(s)	904
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	4 cut(s)	43, 46, 523, 854
BshFI	GGCC	3 cut(s)	817, 954, 1066
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	279, 803
BsmAI	GTCTC	2 cut(s)	242, 587
BsnI	GGCC	3 cut(s)	817, 954, 1066
Bso31I	GGTCTC	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp13I	TCCGGA	1 cut(s)	331
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	25, 328, 919
BspACI	CCGC	1 cut(s)	845
BspANI	GGCC	3 cut(s)	817, 954, 1066
BspEI	TCCGGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	330, 795
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	3 cut(s)	323, 336, 914
BspQI	GCTCTTC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	587
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	904
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	3 cut(s)	25, 328, 919
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	435
Bst6I	CTCTTC	3 cut(s)	222, 436, 478
BstAPI	GCANNNNNTGC	1 cut(s)	943
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	11, 713
BstDEI	CTNAG	2 cut(s)	455, 863
BstF5I	GGATG	1 cut(s)	490
BstKTI	GATC	3 cut(s)	28, 331, 922
BstMAI	GTCTC	2 cut(s)	242, 587
BstMBI	GATC	3 cut(s)	25, 328, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 943
BstNSI	RCATGY	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	4 cut(s)	43, 46, 523, 854
BstX2I	RGATCY	2 cut(s)	328, 919
BstYI	RGATCY	2 cut(s)	328, 919
BsuI	GTATCC	1 cut(s)	1017
BsuRI	GGCC	3 cut(s)	817, 954, 1066
BtsCI	GGATG	1 cut(s)	490
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	3 cut(s)	637, 981, 1010
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	11, 713
Cfr13I	GGNCC	3 cut(s)	270, 425, 556
Csp6I	GTAC	4 cut(s)	4, 350, 358, 856
CviAII	CATG	5 cut(s)	216, 941, 956, 980, 1062
CviQI	GTAC	4 cut(s)	4, 350, 358, 856
DdeI	CTNAG	2 cut(s)	455, 863
DpnI	GATC	3 cut(s)	27, 330, 921
DpnII	GATC	3 cut(s)	25, 328, 919
Eam1104I	CTCTTC	3 cut(s)	222, 436, 478
EarI	CTCTTC	3 cut(s)	222, 436, 478
Eco130I	CCWWGG	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	587
Eco47I	GGWCC	3 cut(s)	270, 425, 556
Eco57I	CTGAAG	1 cut(s)	254
Eco72I	CACGTG	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	1087
EcoT14I	CCWWGG	1 cut(s)	414
EcoT22I	ATGCAT	1 cut(s)	1042
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	5 cut(s)	219, 944, 959, 983, 1065
FatI	CATG	5 cut(s)	215, 940, 955, 979, 1061
Fnu4HI	GCNGC	4 cut(s)	57, 60, 537, 843
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	4 cut(s)	57, 60, 537, 843
FspBI	CTAG	7 cut(s)	347, 521, 596, 693, 726, 950, 1044
GluI	GCNGC	4 cut(s)	57, 60, 537, 843
HaeIII	GGCC	3 cut(s)	817, 954, 1066
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	5 cut(s)	219, 944, 959, 983, 1065
HindIII	AAGCTT	2 cut(s)	927, 1031
HinfI	GANTC	3 cut(s)	86, 156, 679
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	2 cut(s)	326, 1096
Hpy166II	GTNNAC	3 cut(s)	467, 556, 856
Hpy188I	TCNGA	3 cut(s)	274, 492, 684
Hpy188III	TCNNGA	6 cut(s)	120, 221, 332, 428, 923, 1044
Hpy8I	GTNNAC	3 cut(s)	467, 556, 856
HpyCH4IV	ACGT	2 cut(s)	52, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 943
HpyF3I	CTNAG	2 cut(s)	455, 863
HpySE526I	ACGT	2 cut(s)	52, 498
Hsp92II	CATG	5 cut(s)	219, 944, 959, 983, 1065
Kpn2I	TCCGGA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	25, 328, 919
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	793
Lsp1109I	GCAGC	4 cut(s)	43, 46, 523, 854
LweI	GCATC	7 cut(s)	156, 247, 712, 829, 946, 1027, 1049
MaeI	CTAG	7 cut(s)	347, 521, 596, 693, 726, 950, 1044
MaeII	ACGT	2 cut(s)	52, 498
MaeIII	GTNAC	2 cut(s)	376, 511
MalI	GATC	3 cut(s)	27, 330, 921
MboI	GATC	3 cut(s)	25, 328, 919
MfeI	CAATTG	1 cut(s)	1099
MflI	RGATCY	2 cut(s)	328, 919
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	4 cut(s)	649, 969, 1087, 1099
MmeI	TCCRAC	2 cut(s)	84, 944
MnlI	CCTC	8 cut(s)	74, 77, 319, 431, 443, 744, 957, 1040
Mph1103I	ATGCAT	1 cut(s)	1042
MroI	TCCGGA	1 cut(s)	331
MspA1I	CMGCKG	1 cut(s)	845
MspI	CCGG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	1099
MwoI	GCNNNNNNNGC	2 cut(s)	536, 943
NdeII	GATC	3 cut(s)	25, 328, 919
NlaIII	CATG	5 cut(s)	219, 944, 959, 983, 1065
NlaIV	GGNNCC	2 cut(s)	330, 795
NmeAIII	GCCGAG	1 cut(s)	571
NmuCI	GTSAC	1 cut(s)	511
NsiI	ATGCAT	1 cut(s)	1042
NspI	RCATGY	1 cut(s)	219
PaqCI	CACCTGC	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	86, 156, 679
PkrI	GCNGC	4 cut(s)	58, 61, 538, 844
PmaCI	CACGTG	1 cut(s)	53
PmlI	CACGTG	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	734
PspCI	CACGTG	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	330, 795
PspPI	GGNCC	3 cut(s)	270, 425, 556
PsuI	RGATCY	2 cut(s)	328, 919
RsaI	GTAC	4 cut(s)	5, 351, 359, 857
RsaNI	GTAC	4 cut(s)	4, 350, 358, 856
SapI	GCTCTTC	1 cut(s)	222
SatI	GCNGC	4 cut(s)	57, 60, 537, 843
Sau3AI	GATC	3 cut(s)	25, 328, 919
Sau96I	GGNCC	3 cut(s)	270, 425, 556
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	7 cut(s)	156, 247, 712, 829, 946, 1027, 1049
SinI	GGWCC	3 cut(s)	270, 425, 556
SpeI	ACTAGT	1 cut(s)	346
Sse9I	AATT	4 cut(s)	649, 969, 1087, 1099
SsiI	CCGC	1 cut(s)	845
SspMI	CTAG	7 cut(s)	347, 521, 596, 693, 726, 950, 1044
StyI	CCWWGG	1 cut(s)	414
TaiI	ACGT	2 cut(s)	55, 501
TaqI	TCGA	1 cut(s)	392
TaqII	GACCGA	1 cut(s)	573
TasI	AATT	4 cut(s)	649, 969, 1087, 1099
TatI	WGTACW	3 cut(s)	3, 357, 855
TfiI	GAWTC	3 cut(s)	86, 156, 679
TscAI	CASTG	3 cut(s)	637, 981, 1017
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	4 cut(s)	56, 59, 536, 842
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	3 cut(s)	309, 633, 996
TspGWI	ACGGA	1 cut(s)	801
TspRI	CASTG	3 cut(s)	637, 981, 1017
VneI	GTGCAC	1 cut(s)	465
VpaK11BI	GGWCC	3 cut(s)	270, 425, 556
XapI	RAATTY	2 cut(s)	969, 1087
XbaI	TCTAGA	1 cut(s)	1043
XceI	RCATGY	1 cut(s)	219
XspI	CTAG	7 cut(s)	347, 521, 596, 693, 726, 950, 1044
Zsp2I	ATGCAT	1 cut(s)	1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.