pycom10g17780

Belongs to the DEAD box helicase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
20957887 .. 20960887
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g17780.1

Sequence Viewer

Length: 1467 bp
ATGAAGATTCGTATGCTCAAATGCAAAAGTGGTTTAAATTGGTTAAAATTTAATTCTTTGTGGACTAGCCCTTATTTTAATTTTGGCGCTAATAATTGGCAACCAAGCGGTGTCGTTTCTGTCACACCCTACTCAAAGGTTAAAACTTTCGGCCGCCACCTTCCGCGAAACCAAAACACGATGGCTGAAGAAGAAAACACTGTGTCCGTCGGCTTCCCTCTCTTCAAACCCGCCGCACCCAAATCCCCAAAACCCTCCAAAAACCCTAATCCCGCCGCAACTGCTGCCCCCTCCGCCCCTGACTTCCAAATAGAAAAATCCACAAACCCTAACCCCGACTCCGCCGCTACATTCGCCGACCTCGGCCTCGCCGACTGGGTCCTCCGAACATGCGACGAGCTTGGTATGAAAAAGCCTACGGCGGTCCAATCCCACTGCATCCCCGAAATCCTAGCGGGCCGGGACGTGCTGGGCATCGCCCAGACCGGTAGCGGCAAGACGGCGGCGTTCGCTCTGCCGATTCTGCAGCGGCTCTCCGAGAACCCTTTCGGGGTTTTCGCGCTGGTGGTCACGCCGACGAGGGAGCTGGCGTACCAGTTGGCCGAGCAGTTTAGGGCTCTGGGGGCGTCTTTGCACTTGCGATGCTCTGTGGTTGTCGGAGGCATGGATAGCTTGACTCAAACTCAGAGCTTGACGGCTAGACCGCATGTGGTGATCGCCACGCCGGGGAGGATTAAGGTCATGCTTAGCCAGAAGGATATTCGTCCTGTGTTCTCTAACACCAAGTTTCTAGTTCTGGATGAAGCAGATAGATTATTGGATGTTGGCTTTGAAGAGGAGCTGAGAGCGGTGTTTGAGTGCTTGCCAAAGAGTCGGCAAACTCTGTTATTTTCTGCAACTATGACAAGTGAACTCCGAGCACTGAATAGACCTTCTGCAAATAAGGCATACAAGTACGAGGCATATGAAGGTTTCAGAACAGTTGACACTCTAAAGCAGCAATATGTTTACAAACCCAAAAGTGTGAAGGATGTTTATCTGGTTCCTGTGTTGCTCGCAACTGATGTTGCCAATCGTGGTTTGGACATTCCGACAGTCGACCTAGTTATCAATTACGACATTCCAAGGGATCCAACGGATTATGTTCACCGTGTGGGGCGTACTGCAAGAGCAGGCAGAGGAGGTTTAGCCATAAGCTTCATTACCCAAAAAGAGGTAAACCTCGTTAAGAAAATAGAAGAAGTTGTAGGGAAACAAATGGAGGAATTTGAATGCAAGGAAAACGACGCTCTTGCTGATATTACCAAGGTTTTCAAGGCCAGGCGTGTTGCAAAGATGAAGATGCTGGATGATGGGTTTGAAGAGAAGGAACAAGAACGGAAGAAACAAAAGCTGAAGATGCTAGAAGAGAAAGGTTTACTGAAGAAAAGGAGCAAGAAGAGGAAAAGGGAAAAATCTGACAAGTAA

Protein Analysis

489

Amino Acids

54.53

Weight (kDa)

9.56

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 140 - 306 1.8e-48 DEAD/DEAH box helicase
ResIII PF04851 154 - 301 6.3e-08 Type III restriction enzyme, res subunit
Helicase_C PF00271 290 - 392 5.6e-17 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 848
AccI GTMKAC 1 cut(s) 1098
AccII CGCG 2 cut(s) 166, 560
AclWI GGATC 2 cut(s) 1124, 1137
AcoI YGGCCR 2 cut(s) 151, 600
AcsI RAATTY 2 cut(s) 47, 1265
AcuI CTGAAG 3 cut(s) 207, 1415, 1442
AcyI GRCGYC 1 cut(s) 626
AdeI CACNNNGTG 1 cut(s) 1153
AfaI GTAC 3 cut(s) 593, 956, 1162
AfiI CCNNNNNNNGG 3 cut(s) 550, 726, 1213
AgeI ACCGGT 1 cut(s) 485
AgsI TTSAA 5 cut(s) 226, 833, 1271, 1315, 1361
AjiI CACGTC 1 cut(s) 466
AjnI CCWGG 1 cut(s) 1319
AluBI AGCT 7 cut(s) 400, 586, 672, 690, 841, 1197, 1393
AluI AGCT 7 cut(s) 400, 586, 672, 690, 841, 1197, 1393
Alw21I GWGCWC 1 cut(s) 922
AlwI GGATC 2 cut(s) 1124, 1137
AoxI GGCC 5 cut(s) 151, 364, 457, 600, 1317
ApeKI GCWGC 3 cut(s) 284, 526, 997
ApoI RAATTY 2 cut(s) 47, 1265
AsiGI ACCGGT 1 cut(s) 485
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 2 cut(s) 89, 562
AspS9I GGNCC 3 cut(s) 379, 424, 457
AsuC2I CCSGG 2 cut(s) 461, 726
AsuHPI GGTGA 2 cut(s) 724, 1139
AvaII GGWCC 2 cut(s) 379, 424
BamHI GGATCC 1 cut(s) 1129
BanII GRGCYC 1 cut(s) 619
Bbv12I GWGCWC 1 cut(s) 922
BbvI GCAGC 3 cut(s) 271, 538, 1009
BccI CCATC 2 cut(s) 175, 1346
BceAI ACGGC 3 cut(s) 435, 516, 711
BcgI CGANNNNNNTGC 2 cut(s) 1274, 1308
BciT130I CCWGG 1 cut(s) 1321
BcnI CCSGG 2 cut(s) 461, 726
BfaI CTAG 6 cut(s) 66, 452, 699, 791, 1103, 1403
BfmI CTRYAG 1 cut(s) 524
BfoI RGCGCY 1 cut(s) 90
BlpI GCTNAGC 1 cut(s) 746
Bme1390I CCNGG 3 cut(s) 461, 726, 1321
Bme18I GGWCC 2 cut(s) 379, 424
BmgBI CACGTC 1 cut(s) 466
BmgT120I GGNCC 3 cut(s) 379, 424, 457
BmiI GGNNCC 3 cut(s) 380, 1044, 1131
BmrFI CCNGG 3 cut(s) 461, 726, 1321
BmrI ACTGGG 1 cut(s) 385
BmsI GCATC 5 cut(s) 447, 483, 632, 1332, 1389
BmuI ACTGGG 1 cut(s) 385
Bpu1102I GCTNAGC 1 cut(s) 746
BpuMI CCSGG 2 cut(s) 461, 726
BsaBI GATNNNNATC 1 cut(s) 1035
BsaHI GRCGYC 1 cut(s) 626
BsaJI CCNNGG 4 cut(s) 361, 725, 1124, 1305
BsaWI WCCGGW 1 cut(s) 485
BsaXI ACNNNNNCTCC 4 cut(s) 323, 353, 575, 605
Bsc4I CCNNNNNNNGG 3 cut(s) 550, 726, 1213
Bse118I RCCGGY 1 cut(s) 485
Bse1I ACTGG 2 cut(s) 380, 595
Bse8I GATNNNNATC 1 cut(s) 1035
BseBI CCWGG 1 cut(s) 1321
BseDI CCNNGG 4 cut(s) 361, 725, 1124, 1305
BseGI GGATG 5 cut(s) 438, 805, 826, 1036, 1354
BseJI GATNNNNATC 1 cut(s) 1035
BseLI CCNNNNNNNGG 3 cut(s) 550, 726, 1213
BseMII CTCAG 2 cut(s) 698, 833
BseNI ACTGG 2 cut(s) 380, 595
BseRI GAGGAG 2 cut(s) 851, 1194
BseX3I CGGCCG 1 cut(s) 151
BseXI GCAGC 3 cut(s) 271, 538, 1009
BseYI CCCAGC 1 cut(s) 469
Bsh1236I CGCG 2 cut(s) 166, 560
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 5 cut(s) 153, 366, 459, 602, 1319
BshTI ACCGGT 1 cut(s) 485
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 922
BsiSI CCGG 3 cut(s) 460, 486, 725
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 3 cut(s) 550, 726, 1213
BsmFI GGGAC 1 cut(s) 476
BsmI GAATGC 1 cut(s) 1277
BsnI GGCC 5 cut(s) 153, 366, 459, 602, 1319
Bsp1286I GDGCHC 2 cut(s) 619, 922
Bsp143I GATC 2 cut(s) 714, 1129
Bsp1720I GCTNAGC 1 cut(s) 746
BspANI GGCC 5 cut(s) 153, 366, 459, 602, 1319
BspCNI CTCAG 2 cut(s) 697, 834
BspFNI CGCG 2 cut(s) 166, 560
BspLI GGNNCC 3 cut(s) 380, 1044, 1131
BspMAI CTGCAG 1 cut(s) 528
BspPI GGATC 2 cut(s) 1124, 1137
BsrBI CCGCTC 1 cut(s) 848
BsrFI RCCGGY 1 cut(s) 485
BsrI ACTGG 2 cut(s) 380, 595
BssAI RCCGGY 1 cut(s) 485
BssECI CCNNGG 4 cut(s) 361, 725, 1124, 1305
BssMI GATC 2 cut(s) 714, 1129
BssNI GRCGYC 1 cut(s) 626
BssT1I CCWWGG 2 cut(s) 1124, 1305
Bst2UI CCWGG 1 cut(s) 1321
Bst4CI ACNGT 4 cut(s) 202, 982, 1096, 1151
Bst6I CTCTTC 5 cut(s) 227, 828, 1356, 1401, 1433
BstACI GRCGYC 1 cut(s) 626
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 5 cut(s) 457, 588, 863, 1056, 1174
BstDEI CTNAG 3 cut(s) 684, 746, 842
BstF5I GGATG 5 cut(s) 438, 805, 826, 1036, 1354
BstFNI CGCG 2 cut(s) 166, 560
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 2 cut(s) 89, 562
BstKTI GATC 2 cut(s) 717, 1132
BstMBI GATC 2 cut(s) 714, 1129
BstMCI CGRYCG 1 cut(s) 154
BstNI CCWGG 1 cut(s) 1321
BstNSI RCATGY 2 cut(s) 393, 710
BstSCI CCNGG 3 cut(s) 459, 724, 1319
BstSFI CTRYAG 1 cut(s) 524
BstUI CGCG 2 cut(s) 166, 560
BstV1I GCAGC 3 cut(s) 271, 538, 1009
BstX2I RGATCY 1 cut(s) 1129
BstYI RGATCY 1 cut(s) 1129
BstZI CGGCCG 1 cut(s) 151
BsuRI GGCC 5 cut(s) 153, 366, 459, 602, 1319
BtgZI GCGATG 2 cut(s) 460, 655
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 5 cut(s) 438, 805, 826, 1036, 1354
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 3 cut(s) 198, 433, 920
Cac8I GCNNGC 5 cut(s) 457, 588, 863, 1056, 1174
CfoI GCGC 2 cut(s) 89, 562
Cfr10I RCCGGY 1 cut(s) 485
Cfr13I GGNCC 3 cut(s) 379, 424, 457
CseI GACGC 2 cut(s) 615, 1295
Csp6I GTAC 3 cut(s) 592, 955, 1161
CspAI ACCGGT 1 cut(s) 485
CviAII CATG 4 cut(s) 390, 664, 707, 742
CviQI GTAC 3 cut(s) 592, 955, 1161
DdeI CTNAG 3 cut(s) 684, 746, 842
DpnI GATC 2 cut(s) 716, 1131
DpnII GATC 2 cut(s) 714, 1129
DraI TTTAAA 1 cut(s) 36
DraIII CACNNNGTG 1 cut(s) 1153
EaeI YGGCCR 2 cut(s) 151, 600
EagI CGGCCG 1 cut(s) 151
Eam1104I CTCTTC 5 cut(s) 227, 828, 1356, 1401, 1433
EarI CTCTTC 5 cut(s) 227, 828, 1356, 1401, 1433
EciI GGCGGA 2 cut(s) 283, 331
EclXI CGGCCG 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 1124, 1305
Eco24I GRGCYC 1 cut(s) 619
Eco47I GGWCC 2 cut(s) 379, 424
Eco52I CGGCCG 1 cut(s) 151
Eco57I CTGAAG 3 cut(s) 207, 1415, 1442
EcoO109I RGGNCCY 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 1319
EcoT14I CCWWGG 2 cut(s) 1124, 1305
EcoT38I GRGCYC 1 cut(s) 619
ErhI CCWWGG 2 cut(s) 1124, 1305
FaeI CATG 4 cut(s) 393, 667, 710, 745
FaqI GGGAC 1 cut(s) 476
FatI CATG 4 cut(s) 389, 663, 706, 741
FauI CCCGC 3 cut(s) 238, 280, 448
FauNDI CATATG 1 cut(s) 964
FblI GTMKAC 1 cut(s) 1098
FokI GGATG 5 cut(s) 425, 812, 833, 1043, 1361
FriOI GRGCYC 1 cut(s) 619
FspBI CTAG 6 cut(s) 66, 452, 699, 791, 1103, 1403
GlaI GCGC 2 cut(s) 88, 561
GsaI CCCAGC 1 cut(s) 473
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 5 cut(s) 153, 366, 459, 602, 1319
HapII CCGG 3 cut(s) 460, 486, 725
HgaI GACGC 2 cut(s) 615, 1295
HhaI GCGC 2 cut(s) 89, 562
Hin1I GRCGYC 1 cut(s) 626
Hin1II CATG 4 cut(s) 393, 667, 710, 745
Hin6I GCGC 2 cut(s) 87, 560
HinP1I GCGC 2 cut(s) 87, 560
HincII GTYRAC 2 cut(s) 985, 1099
HindII GTYRAC 2 cut(s) 985, 1099
HindIII AAGCTT 1 cut(s) 1195
HinfI GANTC 5 cut(s) 7, 338, 520, 676, 871
HpaII CCGG 3 cut(s) 460, 486, 725
HphI GGTGA 2 cut(s) 724, 1139
Hpy166II GTNNAC 8 cut(s) 63, 911, 985, 1009, 1099, 1147, 1219, 1418
Hpy188I TCNGA 8 cut(s) 386, 538, 659, 687, 917, 977, 1092, 1459
Hpy188III TCNNGA 1 cut(s) 797
Hpy8I GTNNAC 8 cut(s) 63, 911, 985, 1009, 1099, 1147, 1219, 1418
Hpy99I CGWCG 4 cut(s) 212, 398, 580, 1289
HpyAV CCTTC 6 cut(s) 170, 748, 942, 962, 1021, 1360
HpyCH4III ACNGT 4 cut(s) 202, 982, 1096, 1151
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 9 cut(s) 24, 438, 526, 634, 896, 938, 1166, 1275, 1331
HpyF3I CTNAG 3 cut(s) 684, 746, 842
HpySE526I ACGT 1 cut(s) 465
Hsp92I GRCGYC 1 cut(s) 626
Hsp92II CATG 4 cut(s) 393, 667, 710, 745
HspAI GCGC 2 cut(s) 87, 560
Kzo9I GATC 2 cut(s) 714, 1129
LmnI GCTCC 3 cut(s) 583, 838, 1431
Lsp1109I GCAGC 3 cut(s) 271, 538, 1009
LweI GCATC 5 cut(s) 447, 483, 632, 1332, 1389
MaeI CTAG 6 cut(s) 66, 452, 699, 791, 1103, 1403
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 121, 568
MalI GATC 2 cut(s) 716, 1131
MbiI CCGCTC 1 cut(s) 848
MboI GATC 2 cut(s) 714, 1129
MflI RGATCY 1 cut(s) 1129
MhlI GDGCHC 2 cut(s) 619, 922
MluCI AATT 7 cut(s) 37, 47, 52, 79, 94, 1111, 1265
MlyI GAGTC 3 cut(s) 332, 670, 880
MmeI TCCRAC 3 cut(s) 637, 1115, 1157
MroXI GAANNNNTTC 1 cut(s) 545
MseI TTAA 7 cut(s) 35, 44, 51, 78, 141, 735, 1227
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 3 cut(s) 460, 486, 725
MspR9I CCNGG 3 cut(s) 461, 726, 1321
Mva1269I GAATGC 1 cut(s) 1277
MvaI CCWGG 1 cut(s) 1321
MvnI CGCG 2 cut(s) 166, 560
NciI CCSGG 2 cut(s) 461, 726
NdeI CATATG 1 cut(s) 964
NdeII GATC 2 cut(s) 714, 1129
NlaIII CATG 4 cut(s) 393, 667, 710, 745
NlaIV GGNNCC 3 cut(s) 380, 1044, 1131
NmeAIII GCCGAG 2 cut(s) 342, 628
NmuCI GTSAC 2 cut(s) 121, 568
NspI RCATGY 2 cut(s) 393, 710
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PctI GAATGC 1 cut(s) 1277
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 2 cut(s) 7, 520
PflFI GACNNNGTC 1 cut(s) 377
PinAI ACCGGT 1 cut(s) 485
PleI GAGTC 3 cut(s) 332, 670, 879
PpsI GAGTC 3 cut(s) 332, 670, 879
PpuMI RGGWCCY 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 1319
PspFI CCCAGC 1 cut(s) 469
PspGI CCWGG 1 cut(s) 1319
PspN4I GGNNCC 3 cut(s) 380, 1044, 1131
PspPI GGNCC 3 cut(s) 379, 424, 457
PspPPI RGGWCCY 1 cut(s) 379
PstI CTGCAG 1 cut(s) 528
PsuI RGATCY 1 cut(s) 1129
PsyI GACNNNGTC 1 cut(s) 377
RsaI GTAC 3 cut(s) 593, 956, 1162
RsaNI GTAC 3 cut(s) 592, 955, 1161
SalI GTCGAC 1 cut(s) 1097
SaqAI TTAA 7 cut(s) 35, 44, 51, 78, 141, 735, 1227
Sau3AI GATC 2 cut(s) 714, 1129
Sau96I GGNCC 3 cut(s) 379, 424, 457
SchI GAGTC 3 cut(s) 332, 670, 880
ScrFI CCNGG 3 cut(s) 461, 726, 1321
SduI GDGCHC 2 cut(s) 619, 922
SfaNI GCATC 5 cut(s) 447, 483, 632, 1332, 1389
SfcI CTRYAG 1 cut(s) 524
SinI GGWCC 2 cut(s) 379, 424
Sse9I AATT 7 cut(s) 37, 47, 52, 79, 94, 1111, 1265
SspMI CTAG 6 cut(s) 66, 452, 699, 791, 1103, 1403
StyD4I CCNGG 3 cut(s) 459, 724, 1319
StyI CCWWGG 2 cut(s) 1124, 1305
TaaI ACNGT 4 cut(s) 202, 982, 1096, 1151
TaiI ACGT 1 cut(s) 468
TaqI TCGA 1 cut(s) 1098
TasI AATT 7 cut(s) 37, 47, 52, 79, 94, 1111, 1265
TauI GCSGC 7 cut(s) 156, 236, 278, 347, 495, 506, 532
TfiI GAWTC 2 cut(s) 7, 520
Tru1I TTAA 7 cut(s) 35, 44, 51, 78, 141, 735, 1227
Tru9I TTAA 7 cut(s) 35, 44, 51, 78, 141, 735, 1227
TscAI CASTG 3 cut(s) 205, 440, 927
TseFI GTSAC 2 cut(s) 121, 568
TseI GCWGC 3 cut(s) 284, 526, 997
Tsp45I GTSAC 2 cut(s) 121, 568
TspDTI ATGAA 6 cut(s) 17, 422, 816, 981, 1189, 1352
TspGWI ACGGA 3 cut(s) 196, 1151, 1393
TspRI CASTG 3 cut(s) 205, 440, 927
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 379, 424
XapI RAATTY 2 cut(s) 47, 1265
XceI RCATGY 2 cut(s) 393, 710
XcmI CCANNNNNNNNNTGG 1 cut(s) 1078
XmiI GTMKAC 1 cut(s) 1098
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 6 cut(s) 66, 452, 699, 791, 1103, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.