Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010462

Physical Location & Seq

Genomic Coordinates Reverse (-)

77452053 .. 77455947

Gene Structure 3895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00055760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1911 bp

ATGGACGGAGAAGAAGAGACCACTGTATCTATAGACTTCCCTCTCTTCAAACCCAGAGCATCTAAACCCGACCCGGATCCGATAACCCATGCCGCCGCCGAACCGGACCTTGAGAGGTCCACAGACCCGGACGCGAACTCCGACGCCAAGTTCACCGACCTCGGCCTCGCCGACTGGCTGCTCCGGACGCTGGCCGAGCTCGGTCTGAAGAAGCCGACGCCGGTCCAGGCCAACTGCATCCCCAAAATCCTGGAGGGCCGGGACGTGCTGGGCCTGGCCCAGACCGGTAGCGGCAAGACGGCGGCGTTCGCGCTGCCGATTCTGCAGCGGCTGGCGGAGGGGCCTTATGGGGTTTTCGCGCTGGTGATGACGCCGACGCATGAGCTGGCGTACCAGCTCGCCGAGCAGTTCAGGGCTTTCGGGTCGTCGCTGCATTTGAGGTGCTCGGTGATTGTTGGAGGTATGGATAAGCTGAAGCAAGCTCAGAGCTTGATGGGTAGGCCCCATGTGGTGATTGCCACTCCCGGTAGGGTTAGGGATTTGCTTCAGGAGGACCCTGATTTTCCCTCTGTTTTCTCCAAGGCCAAGTTCCTAGTGCTGGATGAGGCAGATAGGTTATTGAATGCTGAATTTGAGGCCGATTTGAGAGTGGTGTTTCAGTGCTTGCCGAAGAATCGGCAGACCCTGTTGTTTTCTGCAACAATGACTAGTGACCTGCAAGCACTGATTGAAGTTTCTGCAAATAAGGCGTACTTTTACCAGGCTTATGAAGGTCTCAGGACGGTTGGCACTCTTGCGCAGAAATATGTTTTCATACCCCGTGAAGCGAAAGAAGTTTATTTGGTGTATATTTTGTCGAAAATGAAAGATATGGGTATTCGTTCAGCCATCGTGTTTGTCTCAACCCTATGGAATTGTCACTTGTTGAATTTTTTACTGGAGGAGCTTGGTCAAAGTGTTTCAGCGTTGCACTCATCCAAATCCCAGCCTCTTAGACTTTCTGCATTACATAAGTTCAAATCTGGACAGGTTCCAGTGTTGATTGCAACTGATCTTGCCAATCGTGGTTTGGATATTCCTACGGTTGACCTAGTAATCAATTATGATATTCCAAGTGATCCAAAGGATTATGTTCACCGTGTGGGACGTACTGCAAGAGCAGGCAGAGGAGGTTTAGCTGTCAGCGTTGTTACCCAACTTGATGTAAAGCTGCTTCATAAAATAGAAGAAGAAGTTGGGGAACAGTTGGTAGAATTTGAATGCAAGGAGAACGAGGTTCTTGAGGATATCCGTAAGGTTTACACAGCCAGGCGTGTCGCAAAGATGAAGATGATGGAATCCAACTTTGTAGAAAGAGAGAAAAAACGGAAAGAACGAACACTAAAGACGCTAGAAGCGAAAGAGGAGGACACCATTCAAGAAAAGAAGACGATCTCCCTGAAGACCTCCGACGATGAGATCTTCGAATTGGAGGAGGACGTAGCGATGGAGTTCGGAACCGTCAAGGCCTTCTTTGGAGACGATGGGGTCTCCCGAGACATGGTGATGCCTATACCTAACGTGCACAGCAAGGAACTGACGAGGATCATTGACTTCTGCACCAAGCATCTCGCCTTGAAGCCGAAAGCGGAGCACGACGAGGCCGGGAAGAAGGAGCTGAGGAAGTTCTATGCTGAGTACGTGAAGGAGGACACCACAGAACGCATAATGGAGCTCATTCTGGCAGCTGATTATTTGAATGTGAATGACTTGCTGGACTTGTTGAACCAGTCCGTGGCGGACCGGATCAAGAACAAGAGTGTGGAGTATGTAAGGAAGTTGTTTGGGATTGAGAGCGATTTTACTCCCGAGGAGGAGGCAGCGCTCCGGGAGGAGTATGCCTGGGCTTTTGAGGGGGTTGATGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009553 GO:0009561 GO:0009791 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0090406 GO:0120025 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

636

Amino Acids

71.54

Weight (kDa)

5.21

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	71 - 235	3.1e-06	Type III restriction enzyme, res subunit
DEAD	PF00270	73 - 241	1.5e-47	DEAD/DEAH box helicase
Helicase_C	PF00271	290 - 388	2e-26	Helicase conserved C-terminal domain
Skp1_POZ	PF03931	477 - 537	6.3e-13	Skp1 family, tetramerisation domain
Skp1	PF01466	583 - 629	4.3e-20	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16280
fragaria_vesca	FvH4_3g14750 FvH4_3g14750 FvH4_3g14750
malus_domestica	MD10G1209000.v1.1
prunus_persica	Prupe.4G132500_v2.0.a1
pyrus_communis	pycom10g17780 pycom13g14880
rosa_chinensis	RchiOBHm_Chr5g0024261
rosa_laevigata	RLG00000032788
rosa_multiflora	Rmu_sc0002344.1_g000004 Rmu_sc0018255.1_g000002
rosa_roxburghii	Rroxscaffold_1G00054920 Rroxscaffold_1G00055760
rosa_rugosa	Rorug05G0082900
rosa_samantha	Rh5AG173300 Rh5BG170200 Rh5CG186300 Rh5DG172800
rosa_wichuraiana	Rw0G000850 Rw5G015650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1526
Acc16I	TGCGCA	1 cut(s)	798
Acc36I	ACCTGC	1 cut(s)	723
AccB7I	CCANNNNNTGG	1 cut(s)	1774
AccII	CGCG	3 cut(s)	134, 311, 359
AccIII	TCCGGA	1 cut(s)	183
AciI	CCGC	8 cut(s)	93, 96, 291, 302, 328, 335, 1628, 1778
AclWI	GGATC	5 cut(s)	71, 84, 1112, 1592, 1793
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	3 cut(s)	629, 928, 1253
AcuI	CTGAAG	4 cut(s)	227, 494, 530, 1460
AcyI	GRCGYC	3 cut(s)	144, 218, 371
AdeI	CACNNNGTG	1 cut(s)	1141
AfaI	GTAC	4 cut(s)	392, 752, 1150, 1679
AfeI	AGCGCT	1 cut(s)	1863
AfiI	CCNNNNNNNGG	4 cut(s)	190, 598, 1540, 1774
AgeI	ACCGGT	1 cut(s)	284
AhlI	ACTAGT	1 cut(s)	707
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	6 cut(s)	225, 249, 273, 759, 1307, 1880
AjuI	GAANNNNNNNTTGG	4 cut(s)	572, 604, 1218, 1250
Alw21I	GWGCWC	5 cut(s)	201, 446, 1566, 1635, 1716
Alw26I	GTCTC	6 cut(s)	11, 779, 904, 1512, 1530, 1534
Alw44I	GTGCAC	1 cut(s)	1562
AlwI	GGATC	5 cut(s)	71, 84, 1112, 1592, 1793
AlwNI	CAGNNNCTG	2 cut(s)	331, 685
Ama87I	CYCGRG	2 cut(s)	1533, 1847
Aor13HI	TCCGGA	1 cut(s)	183
Aor51HI	AGCGCT	1 cut(s)	1863
ApaLI	GTGCAC	1 cut(s)	1562
ApeKI	GCWGC	7 cut(s)	178, 313, 325, 430, 1210, 1724, 1859
ApoI	RAATTY	3 cut(s)	629, 928, 1253
AsiGI	ACCGGT	1 cut(s)	284
AspLEI	GCGC	4 cut(s)	313, 361, 799, 1864
AsuC2I	CCSGG	6 cut(s)	74, 128, 260, 525, 1645, 1868
AsuHPI	GGTGA	6 cut(s)	145, 376, 460, 523, 1127, 1555
AsuII	TTCGAA	1 cut(s)	1464
AvaI	CYCGRG	2 cut(s)	1533, 1847
AvaII	GGWCC	5 cut(s)	106, 117, 223, 553, 1780
BaeGI	GKGCMC	1 cut(s)	1566
BaeI	ACNNNNGTAYC	2 cut(s)	9, 42
BamHI	GGATCC	1 cut(s)	76
BanII	GRGCYC	2 cut(s)	201, 1716
BarI	GAAGNNNNNNTAC	2 cut(s)	1197, 1229
BbsI	GAAGAC	2 cut(s)	1433, 1448
Bbv12I	GWGCWC	5 cut(s)	201, 446, 1566, 1635, 1716
BbvCI	CCTCAGC	1 cut(s)	1658
BbvI	GCAGC	7 cut(s)	165, 300, 337, 417, 1197, 1736, 1871
BccI	CCATC	5 cut(s)	487, 896, 1327, 1480, 1517
BceAI	ACGGC	1 cut(s)	315
BciT130I	CCWGG	6 cut(s)	227, 251, 275, 761, 1309, 1882
BcnI	CCSGG	6 cut(s)	74, 128, 260, 525, 1645, 1868
BcoDI	GTCTC	6 cut(s)	11, 779, 904, 1512, 1530, 1534
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	4 cut(s)	593, 708, 1091, 1391
BfmI	CTRYAG	2 cut(s)	30, 323
BfoI	RGCGCY	1 cut(s)	1865
BfuAI	ACCTGC	1 cut(s)	723
BglII	AGATCT	1 cut(s)	1458
Bme18I	GGWCC	5 cut(s)	106, 117, 223, 553, 1780
BmeT110I	CYCGRG	2 cut(s)	1533, 1847
BmgBI	CACGTC	1 cut(s)	265
BmiI	GGNNCC	6 cut(s)	78, 342, 503, 555, 1032, 1498
BmsI	GCATC	4 cut(s)	68, 246, 1536, 1615
BoxI	GACNNNNGTC	1 cut(s)	221
BpiI	GAAGAC	2 cut(s)	1433, 1448
BpmI	CTGGAG	2 cut(s)	272, 959
Bpu10I	CCTNAGC	1 cut(s)	1658
Bpu14I	TTCGAA	1 cut(s)	1464
BpuEI	CTTGAG	2 cut(s)	131, 1301
BpuMI	CCSGG	6 cut(s)	74, 128, 260, 525, 1645, 1868
BsaAI	YACGTR	1 cut(s)	1681
BsaHI	GRCGYC	3 cut(s)	144, 218, 371
BsaI	GGTCTC	3 cut(s)	11, 779, 1534
BsaJI	CCNNGG	5 cut(s)	160, 579, 1773, 1848, 1881
BsaWI	WCCGGW	4 cut(s)	103, 183, 284, 1782
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 598, 1540, 1774
Bse118I	RCCGGY	2 cut(s)	220, 284
Bse1I	ACTGG	4 cut(s)	179, 942, 1034, 1768
BseAI	TCCGGA	1 cut(s)	183
BseBI	CCWGG	6 cut(s)	227, 251, 275, 761, 1309, 1882
BseDI	CCNNGG	5 cut(s)	160, 579, 1773, 1848, 1881
BseGI	GGATG	3 cut(s)	237, 607, 974
BseLI	CCNNNNNNNGG	4 cut(s)	190, 598, 1540, 1774
BseMII	CTCAG	4 cut(s)	497, 790, 1649, 1665
BseNI	ACTGG	4 cut(s)	179, 942, 1034, 1768
BseRI	GAGGAG	7 cut(s)	956, 1182, 1418, 1487, 1865, 1868, 1886
BseSI	GKGCMC	1 cut(s)	1566
BseXI	GCAGC	7 cut(s)	165, 300, 337, 417, 1197, 1736, 1871
BseYI	CCCAGC	2 cut(s)	268, 984
BsgI	GTGCAG	1 cut(s)	1582
Bsh1236I	CGCG	3 cut(s)	134, 311, 359
BshTI	ACCGGT	1 cut(s)	284
BsiHKAI	GWGCWC	5 cut(s)	201, 446, 1566, 1635, 1716
BsiHKCI	CYCGRG	2 cut(s)	1533, 1847
BslFI	GGGAC	2 cut(s)	275, 1158
BslI	CCNNNNNNNGG	4 cut(s)	190, 598, 1540, 1774
BsmAI	GTCTC	6 cut(s)	11, 779, 904, 1512, 1530, 1534
BsmBI	CGTCTC	1 cut(s)	1512
BsmFI	GGGAC	2 cut(s)	275, 1158
BsmI	GAATGC	2 cut(s)	628, 1265
Bso31I	GGTCTC	3 cut(s)	11, 779, 1534
BsoBI	CYCGRG	2 cut(s)	1533, 1847
Bsp119I	TTCGAA	1 cut(s)	1464
Bsp1286I	GDGCHC	5 cut(s)	201, 446, 1566, 1635, 1716
Bsp13I	TCCGGA	1 cut(s)	183
Bsp143I	GATC	7 cut(s)	76, 1051, 1117, 1431, 1458, 1584, 1785
BspACI	CCGC	8 cut(s)	93, 96, 291, 302, 328, 335, 1628, 1778
BspCNI	CTCAG	4 cut(s)	496, 789, 1650, 1666
BspEI	TCCGGA	1 cut(s)	183
BspFNI	CGCG	3 cut(s)	134, 311, 359
BspLI	GGNNCC	6 cut(s)	78, 342, 503, 555, 1032, 1498
BspMAI	CTGCAG	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	723
BspPI	GGATC	5 cut(s)	71, 84, 1112, 1592, 1793
BspT104I	TTCGAA	1 cut(s)	1464
BspTNI	GGTCTC	3 cut(s)	11, 779, 1534
BsrFI	RCCGGY	2 cut(s)	220, 284
BsrI	ACTGG	4 cut(s)	179, 942, 1034, 1768
BssAI	RCCGGY	2 cut(s)	220, 284
BssECI	CCNNGG	5 cut(s)	160, 579, 1773, 1848, 1881
BssMI	GATC	7 cut(s)	76, 1051, 1117, 1431, 1458, 1584, 1785
BssNI	GRCGYC	3 cut(s)	144, 218, 371
BssT1I	CCWWGG	1 cut(s)	579
Bst2UI	CCWGG	6 cut(s)	227, 251, 275, 761, 1309, 1882
Bst4CI	ACNGT	6 cut(s)	25, 784, 1084, 1139, 1245, 1501
Bst6I	CTCTTC	2 cut(s)	9, 50
BstACI	GRCGYC	3 cut(s)	144, 218, 371
BstBAI	YACGTR	1 cut(s)	1681
BstBI	TTCGAA	1 cut(s)	1464
BstC8I	GCNNGC	8 cut(s)	192, 333, 387, 399, 480, 665, 720, 1162
BstDEI	CTNAG	5 cut(s)	483, 776, 992, 1658, 1674
BstDSI	CCRYGG	1 cut(s)	1773
BstF5I	GGATG	3 cut(s)	237, 607, 974
BstFNI	CGCG	3 cut(s)	134, 311, 359
BstH2I	RGCGCY	1 cut(s)	1865
BstHHI	GCGC	4 cut(s)	313, 361, 799, 1864
BstKTI	GATC	7 cut(s)	79, 1054, 1120, 1434, 1461, 1587, 1788
BstMAI	GTCTC	6 cut(s)	11, 779, 904, 1512, 1530, 1534
BstMBI	GATC	7 cut(s)	76, 1051, 1117, 1431, 1458, 1584, 1785
BstMWI	GCNNNNNNNGC	6 cut(s)	187, 196, 308, 322, 403, 746
BstNI	CCWGG	6 cut(s)	227, 251, 275, 761, 1309, 1882
BstPAI	GACNNNNGTC	1 cut(s)	221
BstSFI	CTRYAG	2 cut(s)	30, 323
BstSLI	GKGCMC	1 cut(s)	1566
BstUI	CGCG	3 cut(s)	134, 311, 359
BstV1I	GCAGC	7 cut(s)	165, 300, 337, 417, 1197, 1736, 1871
BstV2I	GAAGAC	2 cut(s)	1433, 1448
BstX2I	RGATCY	2 cut(s)	76, 1458
BstXI	CCANNNNNNTGG	1 cut(s)	250
BstYI	RGATCY	2 cut(s)	76, 1458
BtgI	CCRYGG	1 cut(s)	1773
BtgZI	GCGATG	1 cut(s)	1499
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	237, 607, 974
BtsIMutI	CAGTG	4 cut(s)	21, 665, 722, 1041
BveI	ACCTGC	1 cut(s)	723
Cac8I	GCNNGC	8 cut(s)	192, 333, 387, 399, 480, 665, 720, 1162
CaiI	CAGNNNCTG	2 cut(s)	331, 685
CfoI	GCGC	4 cut(s)	313, 361, 799, 1864
Cfr10I	RCCGGY	2 cut(s)	220, 284
CpoI	CGGWCCG	1 cut(s)	1780
CseI	GACGC	7 cut(s)	140, 152, 196, 226, 379, 385, 1396
Csp6I	GTAC	4 cut(s)	391, 751, 1149, 1678
CspAI	ACCGGT	1 cut(s)	284
CspI	CGGWCCG	1 cut(s)	1780
CviAII	CATG	4 cut(s)	89, 380, 506, 1540
CviQI	GTAC	4 cut(s)	391, 751, 1149, 1678
DdeI	CTNAG	5 cut(s)	483, 776, 992, 1658, 1674
DpnI	GATC	7 cut(s)	78, 1053, 1119, 1433, 1460, 1586, 1787
DpnII	GATC	7 cut(s)	76, 1051, 1117, 1431, 1458, 1584, 1785
DraIII	CACNNNGTG	1 cut(s)	1141
DrdI	GACNNNNNNGTC	1 cut(s)	1526
DseDI	GACNNNNNNGTC	1 cut(s)	1526
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	2 cut(s)	9, 50
EarI	CTCTTC	2 cut(s)	9, 50
EciI	GGCGGA	2 cut(s)	350, 1793
Ecl136II	GAGCTC	2 cut(s)	199, 1714
Eco130I	CCWWGG	1 cut(s)	579
Eco147I	AGGCCT	1 cut(s)	1508
Eco24I	GRGCYC	2 cut(s)	201, 1716
Eco31I	GGTCTC	3 cut(s)	11, 779, 1534
Eco32I	GATATC	1 cut(s)	1288
Eco47I	GGWCC	5 cut(s)	106, 117, 223, 553, 1780
Eco47III	AGCGCT	1 cut(s)	1863
Eco53kI	GAGCTC	2 cut(s)	199, 1714
Eco57I	CTGAAG	4 cut(s)	227, 494, 530, 1460
Eco88I	CYCGRG	2 cut(s)	1533, 1847
EcoICRI	GAGCTC	2 cut(s)	199, 1714
EcoO109I	RGGNCCY	3 cut(s)	341, 501, 553
EcoRII	CCWGG	6 cut(s)	225, 249, 273, 759, 1307, 1880
EcoRV	GATATC	1 cut(s)	1288
EcoT14I	CCWWGG	1 cut(s)	579
EcoT38I	GRGCYC	2 cut(s)	201, 1716
ErhI	CCWWGG	1 cut(s)	579
Esp3I	CGTCTC	1 cut(s)	1512
FaeI	CATG	4 cut(s)	92, 383, 509, 1543
FalI	AAGNNNNNCTT	4 cut(s)	737, 769, 1496, 1528
FaqI	GGGAC	2 cut(s)	275, 1158
FatI	CATG	4 cut(s)	88, 379, 505, 1539
FokI	GGATG	3 cut(s)	224, 614, 961
FriOI	GRGCYC	2 cut(s)	201, 1716
FspBI	CTAG	4 cut(s)	593, 708, 1091, 1391
FspI	TGCGCA	1 cut(s)	798
GlaI	GCGC	4 cut(s)	312, 360, 798, 1863
GsaI	CCCAGC	2 cut(s)	272, 988
GsuI	CTGGAG	2 cut(s)	272, 959
HaeII	RGCGCY	1 cut(s)	1865
HgaI	GACGC	7 cut(s)	140, 152, 196, 226, 379, 385, 1396
HhaI	GCGC	4 cut(s)	313, 361, 799, 1864
Hin1I	GRCGYC	3 cut(s)	144, 218, 371
Hin1II	CATG	4 cut(s)	92, 383, 509, 1543
Hin6I	GCGC	4 cut(s)	311, 359, 797, 1862
HinP1I	GCGC	4 cut(s)	311, 359, 797, 1862
HincII	GTYRAC	1 cut(s)	1087
HindII	GTYRAC	1 cut(s)	1087
HinfI	GANTC	3 cut(s)	319, 673, 1337
HphI	GGTGA	6 cut(s)	145, 376, 460, 523, 1127, 1555
Hpy166II	GTNNAC	6 cut(s)	120, 153, 1087, 1135, 1300, 1564
Hpy188I	TCNGA	6 cut(s)	81, 142, 207, 486, 1450, 1496
Hpy188III	TCNNGA	9 cut(s)	184, 548, 778, 1023, 1280, 1418, 1533, 1789, 1847
Hpy8I	GTNNAC	6 cut(s)	120, 153, 1087, 1135, 1300, 1564
Hpy99I	CGWCG	6 cut(s)	146, 220, 379, 430, 1454, 1640
HpyAV	CCTTC	4 cut(s)	764, 1519, 1645, 1678
HpyCH4III	ACNGT	6 cut(s)	25, 784, 1084, 1139, 1245, 1501
HpyCH4IV	ACGT	5 cut(s)	264, 1147, 1479, 1560, 1680
HpyF10VI	GCNNNNNNNGC	6 cut(s)	187, 196, 308, 322, 403, 746
HpyF3I	CTNAG	5 cut(s)	483, 776, 992, 1658, 1674
HpySE526I	ACGT	5 cut(s)	264, 1147, 1479, 1560, 1680
Hsp92I	GRCGYC	3 cut(s)	144, 218, 371
Hsp92II	CATG	4 cut(s)	92, 383, 509, 1543
HspAI	GCGC	4 cut(s)	311, 359, 797, 1862
Kpn2I	TCCGGA	1 cut(s)	183
Kzo9I	GATC	7 cut(s)	76, 1051, 1117, 1431, 1458, 1584, 1785
LmnI	GCTCC	6 cut(s)	186, 943, 1630, 1654, 1711, 1869
Lsp1109I	GCAGC	7 cut(s)	165, 300, 337, 417, 1197, 1736, 1871
LweI	GCATC	4 cut(s)	68, 246, 1536, 1615
MaeI	CTAG	4 cut(s)	593, 708, 1091, 1391
MaeII	ACGT	5 cut(s)	264, 1147, 1479, 1560, 1680
MaeIII	GTNAC	3 cut(s)	710, 917, 1189
MalI	GATC	7 cut(s)	78, 1053, 1119, 1433, 1460, 1586, 1787
MboI	GATC	7 cut(s)	76, 1051, 1117, 1431, 1458, 1584, 1785
MflI	RGATCY	2 cut(s)	76, 1458
MhlI	GDGCHC	5 cut(s)	201, 446, 1566, 1635, 1716
MluCI	AATT	6 cut(s)	629, 913, 928, 1099, 1253, 1466
MmeI	TCCRAC	4 cut(s)	165, 436, 1365, 1473
MroI	TCCGGA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	1544
MspA1I	CMGCKG	2 cut(s)	328, 1727
Mva1269I	GAATGC	2 cut(s)	628, 1265
MvaI	CCWGG	6 cut(s)	227, 251, 275, 761, 1309, 1882
MvnI	CGCG	3 cut(s)	134, 311, 359
MwoI	GCNNNNNNNGC	6 cut(s)	187, 196, 308, 322, 403, 746
NciI	CCSGG	6 cut(s)	74, 128, 260, 525, 1645, 1868
NdeII	GATC	7 cut(s)	76, 1051, 1117, 1431, 1458, 1584, 1785
NlaIII	CATG	4 cut(s)	92, 383, 509, 1543
NlaIV	GGNNCC	6 cut(s)	78, 342, 503, 555, 1032, 1498
NmeAIII	GCCGAG	3 cut(s)	141, 220, 427
NmuCI	GTSAC	2 cut(s)	710, 917
NsbI	TGCGCA	1 cut(s)	798
NspV	TTCGAA	1 cut(s)	1464
PceI	AGGCCT	1 cut(s)	1508
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 168, 1372, 1394
PctI	GAATGC	2 cut(s)	628, 1265
PfeI	GAWTC	3 cut(s)	319, 673, 1337
PflMI	CCANNNNNTGG	1 cut(s)	1774
PfoI	TCCNGGA	2 cut(s)	249, 1866
PinAI	ACCGGT	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	1681
PpuMI	RGGWCCY	1 cut(s)	553
PshAI	GACNNNNGTC	1 cut(s)	221
Psp124BI	GAGCTC	2 cut(s)	201, 1716
Psp5II	RGGWCCY	1 cut(s)	553
Psp6I	CCWGG	6 cut(s)	225, 249, 273, 759, 1307, 1880
PspFI	CCCAGC	2 cut(s)	268, 984
PspGI	CCWGG	6 cut(s)	225, 249, 273, 759, 1307, 1880
PspN4I	GGNNCC	6 cut(s)	78, 342, 503, 555, 1032, 1498
PspPPI	RGGWCCY	1 cut(s)	553
PstI	CTGCAG	1 cut(s)	327
PstNI	CAGNNNCTG	2 cut(s)	331, 685
PsuI	RGATCY	2 cut(s)	76, 1458
PvuII	CAGCTG	1 cut(s)	1727
RsaI	GTAC	4 cut(s)	392, 752, 1150, 1679
RsaNI	GTAC	4 cut(s)	391, 751, 1149, 1678
RseI	CAYNNNNRTG	1 cut(s)	1544
Rsr2I	CGGWCCG	1 cut(s)	1780
RsrII	CGGWCCG	1 cut(s)	1780
SacI	GAGCTC	2 cut(s)	201, 1716
Sau3AI	GATC	7 cut(s)	76, 1051, 1117, 1431, 1458, 1584, 1785
SduI	GDGCHC	5 cut(s)	201, 446, 1566, 1635, 1716
SfaNI	GCATC	4 cut(s)	68, 246, 1536, 1615
SfcI	CTRYAG	2 cut(s)	30, 323
SfuI	TTCGAA	1 cut(s)	1464
SinI	GGWCC	5 cut(s)	106, 117, 223, 553, 1780
SmiMI	CAYNNNNRTG	1 cut(s)	1544
SmlI	CTYRAG	2 cut(s)	110, 1280
SmoI	CTYRAG	2 cut(s)	110, 1280
SpeI	ACTAGT	1 cut(s)	707
Sse9I	AATT	6 cut(s)	629, 913, 928, 1099, 1253, 1466
SseBI	AGGCCT	1 cut(s)	1508
SsiI	CCGC	8 cut(s)	93, 96, 291, 302, 328, 335, 1628, 1778
SspMI	CTAG	4 cut(s)	593, 708, 1091, 1391
SstI	GAGCTC	2 cut(s)	201, 1716
StuI	AGGCCT	1 cut(s)	1508
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	6 cut(s)	25, 784, 1084, 1139, 1245, 1501
TaiI	ACGT	5 cut(s)	267, 1150, 1482, 1563, 1683
TaqI	TCGA	2 cut(s)	857, 1464
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	6 cut(s)	629, 913, 928, 1099, 1253, 1466
TauI	GCSGC	5 cut(s)	95, 98, 294, 305, 331
TfiI	GAWTC	3 cut(s)	319, 673, 1337
TscAI	CASTG	4 cut(s)	28, 665, 729, 1041
TseFI	GTSAC	2 cut(s)	710, 917
TseI	GCWGC	7 cut(s)	178, 313, 325, 430, 1210, 1724, 1859
Tsp45I	GTSAC	2 cut(s)	710, 917
TspDTI	ATGAA	5 cut(s)	783, 802, 878, 1205, 1340
TspGWI	ACGGA	4 cut(s)	21, 1280, 1381, 1762
TspRI	CASTG	4 cut(s)	28, 665, 729, 1041
Van91I	CCANNNNNTGG	1 cut(s)	1774
VneI	GTGCAC	1 cut(s)	1562
VpaK11BI	GGWCC	5 cut(s)	106, 117, 223, 553, 1780
XapI	RAATTY	3 cut(s)	629, 928, 1253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1066
XspI	CTAG	4 cut(s)	593, 708, 1091, 1391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.