pycom10g18260

Dehydrogenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
21562268 .. 21568525
6258 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1584 bp
ATGACCTTCAGAGCGTCATCCATGGCAGGTCGATCCTTTAAGCTCCTCTCACATTTGCCTTACATGCACGCCCCAACTCCCCTCTCTCGCCAGCAGATTAGCATGGACGCGAAAAGCTTCGTTTCTCAGCTTAATGGTGCTGGTCTATTACGTAGCCAGGGCCTTATTGGGGGGAGATGGTCTGATGCATACGATGGGAACACTATAAAGGTTCACAACCCAGCAACCGGCGAAGTTATAACAACTGTTCCATGCATGGGTCAAAAGGAGACAAATGATGCAATATCTTCAGCCTATGGTGCATTTAGTTCTTGGAGCAACCTCACTGCTTCTGAAAGGAGCAAATATCTAAGGAAATGGTATGATCTGATAATATCCCACAAAGAAGAGCTTGGAAAACTAATTACCTTGGAGCAAGGGAAACCTCTAAAAGAAGCGATTGGTGAGGTGAACTACGGGGCTGCATTTATTGAGTTCTATGCTGAGGAGGCAAAACGTGTATATGGTGATATAATTCCTGCTACTCTTGCTGATAGACGGTTGTTTGTTCTGAAGCAGCCTGTAGGTGTTGTTGGTGCAGTTACTCCCTGGAACTTCCCACTGGCTATGATTACCCGCAAGGTTGGTCCTGCTCTTGCATGTGGCTGCACAGTAGTCATAAAACCATCTGAATATACTCCCCTCACAGCTTTAGCAGCAGCTGAGCTCGCCCTTCAAGCTGGAATACCACCGGGTGTGGTGAACGTGGTTATGGGGAATGCTTCTGAAATTGGGGATGCTTTAATTGCAAGTCCACAGGTAAGAAAGATCACTTTCACAGGCTCAACAGCAGTTGGAAAGAAGTTGATGGCTGGTGCAGCTGGGACTGTTAAAAAGGTATCTCTTGAACTTGGTGGCAATGCGCCTTGCATAGTCTTTGATGATGCCGACCTGGATGTAGCAGTAAAAGGAACTCTTGCAGCAAAGTTCCGTAATAGTGGACAGACATGTGTTTGTGCAAACAGGATTATCGTACAGGAAGGTATCTATGAGAAATTTATGGATGCTTTTGTGAAAGCTGTCCAGAATCTGCAAGTTGGGGATGGCTTCAGTGAAGGTGTGGTCCAGGGCCCTTTAATAAATGAAGCAGCAGTACAAAAGGTCGAATCATTTGTTCAAGATGCTTTATCAAAGGGAGCACAAGTTGTTCTTGGAGCCAAGAGGCATAGCCTTGGAATGACTTTTTATGAGCCTACAGTTCTCAGAGATGTCAAGAGTGATATGCTAATATCAAGAGAGGAAGTATTTGGGCCTGTGGCACCCCTTTTGCGTTTCAAAACTGAGGAGGAGGCTATCCGCATCGCTAATGACACCAACGCAGGGTTAGCTGCTTACATATTTACAAATAGCATTCAATGTTCGTGGCGTGTCTCTGAAGCACTTGAATATGGACTTGTTGGTGTCAATGAAGGCCTAATTTCGACAGAGGTGGCTCCCTTTGGAGGTGTCAAACAATCTGGTCTTGGACGAGAAGGTTCCAAGTATGGGATGGATGAATATTTGGAAGTTAAATATGTGTGCATGGGGAATATGAGCAGTAACTGA

Protein Analysis

528

Amino Acids

56.47

Weight (kDa)

6.96

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 62 - 519 1.1e-174 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 1297
AccII CGCG 1 cut(s) 110
AciI CCGC 2 cut(s) 616, 1336
AclWI GGATC 1 cut(s) 27
AcsI RAATTY 1 cut(s) 1034
AcuI CTGAAG 4 cut(s) 273, 572, 1072, 1434
AdeI CACNNNGTG 1 cut(s) 734
AfaI GTAC 2 cut(s) 1014, 1134
AfiI CCNNNNNNNGG 6 cut(s) 169, 227, 257, 1359, 1481, 1524
AflIII ACRYGT 2 cut(s) 496, 986
AgsI TTSAA 6 cut(s) 716, 887, 1157, 1315, 1394, 1424
AjnI CCWGG 4 cut(s) 156, 587, 930, 1104
Alw21I GWGCWC 2 cut(s) 708, 1180
Alw26I GTCTC 2 cut(s) 263, 1414
AlwI GGATC 1 cut(s) 27
AlwNI CAGNNNCTG 3 cut(s) 701, 1069, 1581
AoxI GGCC 4 cut(s) 160, 1108, 1289, 1450
ApaI GGGCCC 1 cut(s) 1112
ApeKI GCWGC 9 cut(s) 461, 556, 645, 695, 698, 857, 959, 1127, 1367
ApoI RAATTY 1 cut(s) 1034
Asp700I GAANNNNTTC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 904
AspS9I GGNCC 6 cut(s) 160, 626, 1102, 1108, 1109, 1289
AsuC2I CCSGG 1 cut(s) 732
AsuHPI GGTGA 4 cut(s) 455, 460, 518, 751
AvaII GGWCC 2 cut(s) 626, 1102
BaeGI GKGCMC 1 cut(s) 1112
BanI GGYRCC 1 cut(s) 1297
BanII GRGCYC 2 cut(s) 708, 1112
BarI GAAGNNNNNNTAC 2 cut(s) 1116, 1148
Bbv12I GWGCWC 2 cut(s) 708, 1180
BbvCI CCTCAGC 1 cut(s) 483
BbvI GCAGC 9 cut(s) 448, 568, 632, 707, 710, 869, 971, 1139, 1354
BccI CCATC 6 cut(s) 171, 188, 673, 841, 1076, 1522
BciT130I CCWGG 4 cut(s) 158, 589, 932, 1106
BcnI CCSGG 1 cut(s) 732
BcoDI GTCTC 2 cut(s) 263, 1414
BfmI CTRYAG 2 cut(s) 561, 1233
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 9 cut(s) 462, 557, 646, 696, 699, 858, 960, 1128, 1368
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 9 cut(s) 463, 558, 647, 697, 700, 859, 961, 1129, 1369
Bme1390I CCNGG 5 cut(s) 158, 589, 732, 932, 1106
Bme18I GGWCC 2 cut(s) 626, 1102
BmgT120I GGNCC 6 cut(s) 160, 626, 1102, 1108, 1109, 1289
BmiI GGNNCC 5 cut(s) 1110, 1195, 1299, 1473, 1516
BmrFI CCNGG 5 cut(s) 158, 589, 732, 932, 1106
BmsI GCATC 7 cut(s) 175, 268, 766, 913, 1033, 1150, 1347
Bpu10I CCTNAGC 1 cut(s) 483
Bpu1102I GCTNAGC 1 cut(s) 702
BpuMI CCSGG 1 cut(s) 732
BsaAI YACGTR 1 cut(s) 152
BsaJI CCNNGG 6 cut(s) 21, 157, 408, 587, 1105, 1210
BsaXI ACNNNNNCTCC 2 cut(s) 1167, 1197
Bsc4I CCNNNNNNNGG 6 cut(s) 169, 227, 257, 1359, 1481, 1524
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 606
Bse3DI GCAATG 1 cut(s) 904
BseBI CCWGG 4 cut(s) 158, 589, 932, 1106
BseDI CCNNGG 6 cut(s) 21, 157, 408, 587, 1105, 1210
BseGI GGATG 7 cut(s) 17, 781, 940, 1048, 1087, 1533, 1537
BseLI CCNNNNNNNGG 6 cut(s) 169, 227, 257, 1359, 1481, 1524
BseMI GCAATG 1 cut(s) 904
BseMII CTCAG 5 cut(s) 140, 474, 693, 1255, 1311
BseNI ACTGG 1 cut(s) 606
BseRI GAGGAG 4 cut(s) 35, 500, 1337, 1340
BseSI GKGCMC 1 cut(s) 1112
BseXI GCAGC 9 cut(s) 448, 568, 632, 707, 710, 869, 971, 1139, 1354
BseYI CCCAGC 2 cut(s) 220, 860
BsgI GTGCAG 3 cut(s) 597, 631, 876
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 4 cut(s) 162, 1110, 1291, 1452
BshNI GGYRCC 1 cut(s) 1297
BsiHKAI GWGCWC 2 cut(s) 708, 1180
BsiSI CCGG 2 cut(s) 228, 731
BslFI GGGAC 1 cut(s) 877
BslI CCNNNNNNNGG 6 cut(s) 169, 227, 257, 1359, 1481, 1524
BsmAI GTCTC 2 cut(s) 263, 1414
BsmFI GGGAC 1 cut(s) 877
BsmI GAATGC 2 cut(s) 763, 1389
BsnI GGCC 4 cut(s) 162, 1110, 1291, 1452
Bsp120I GGGCCC 1 cut(s) 1108
Bsp1286I GDGCHC 3 cut(s) 708, 1112, 1180
Bsp143I GATC 3 cut(s) 32, 364, 807
Bsp1720I GCTNAGC 1 cut(s) 702
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 616, 1336
BspANI GGCC 4 cut(s) 162, 1110, 1291, 1452
BspCNI CTCAG 5 cut(s) 139, 475, 694, 1254, 1312
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 5 cut(s) 1110, 1195, 1299, 1473, 1516
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 1 cut(s) 27
BspQI GCTCTTC 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 1297
BsrDI GCAATG 1 cut(s) 904
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 606
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 6 cut(s) 21, 157, 408, 587, 1105, 1210
BssMI GATC 3 cut(s) 32, 364, 807
BssT1I CCWWGG 3 cut(s) 21, 408, 1210
Bst2UI CCWGG 4 cut(s) 158, 589, 932, 1106
Bst4CI ACNGT 5 cut(s) 247, 540, 652, 868, 1237
Bst6I CTCTTC 1 cut(s) 381
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 3 cut(s) 69, 92, 708
BstDEI CTNAG 6 cut(s) 126, 350, 483, 702, 1241, 1320
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 7 cut(s) 17, 781, 940, 1048, 1087, 1533, 1537
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 904
BstKTI GATC 3 cut(s) 35, 367, 810
BstMAI GTCTC 2 cut(s) 263, 1414
BstMBI GATC 3 cut(s) 32, 364, 807
BstNI CCWGG 4 cut(s) 158, 589, 932, 1106
BstNSI RCATGY 3 cut(s) 67, 642, 990
BstSCI CCNGG 5 cut(s) 156, 587, 730, 930, 1104
BstSFI CTRYAG 2 cut(s) 561, 1233
BstSLI GKGCMC 1 cut(s) 1112
BstSNI TACGTA 1 cut(s) 152
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 9 cut(s) 448, 568, 632, 707, 710, 869, 971, 1139, 1354
BsuRI GGCC 4 cut(s) 162, 1110, 1291, 1452
BtgI CCRYGG 1 cut(s) 21
BtgZI GCGATG 1 cut(s) 1324
BtsCI GGATG 7 cut(s) 17, 781, 940, 1048, 1087, 1533, 1537
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 3 cut(s) 324, 599, 1096
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 3 cut(s) 69, 92, 708
CaiI CAGNNNCTG 3 cut(s) 701, 1069, 1581
CfoI GCGC 1 cut(s) 904
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 6 cut(s) 160, 626, 1102, 1108, 1109, 1289
CseI GACGC 2 cut(s) 3, 116
Csp6I GTAC 2 cut(s) 1013, 1133
CspCI CAANNNNNGTGG 2 cut(s) 1382, 1417
CviAII CATG 8 cut(s) 22, 64, 103, 252, 256, 639, 987, 1561
CviQI GTAC 2 cut(s) 1013, 1133
DdeI CTNAG 6 cut(s) 126, 350, 483, 702, 1241, 1320
DpnI GATC 3 cut(s) 34, 366, 809
DpnII GATC 3 cut(s) 32, 364, 807
DraIII CACNNNGTG 1 cut(s) 734
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Ecl136II GAGCTC 1 cut(s) 706
Eco105I TACGTA 1 cut(s) 152
Eco130I CCWWGG 3 cut(s) 21, 408, 1210
Eco147I AGGCCT 1 cut(s) 1452
Eco24I GRGCYC 2 cut(s) 708, 1112
Eco47I GGWCC 2 cut(s) 626, 1102
Eco53kI GAGCTC 1 cut(s) 706
Eco57I CTGAAG 4 cut(s) 273, 572, 1072, 1434
EcoICRI GAGCTC 1 cut(s) 706
EcoO109I RGGNCCY 3 cut(s) 160, 1108, 1109
EcoRII CCWGG 4 cut(s) 156, 587, 930, 1104
EcoT14I CCWWGG 3 cut(s) 21, 408, 1210
EcoT22I ATGCAT 2 cut(s) 190, 257
EcoT38I GRGCYC 2 cut(s) 708, 1112
ErhI CCWWGG 3 cut(s) 21, 408, 1210
FaeI CATG 8 cut(s) 25, 67, 106, 255, 259, 642, 990, 1564
FalI AAGNNNNNCTT 6 cut(s) 375, 407, 939, 971, 1173, 1205
FaqI GGGAC 1 cut(s) 877
FatI CATG 8 cut(s) 21, 63, 102, 251, 255, 638, 986, 1560
FauI CCCGC 1 cut(s) 623
Fnu4HI GCNGC 9 cut(s) 462, 557, 646, 696, 699, 858, 960, 1128, 1368
FokI GGATG 7 cut(s) 4, 788, 947, 1055, 1094, 1540, 1544
FriOI GRGCYC 2 cut(s) 708, 1112
Fsp4HI GCNGC 9 cut(s) 462, 557, 646, 696, 699, 858, 960, 1128, 1368
GlaI GCGC 1 cut(s) 903
GluI GCNGC 9 cut(s) 462, 557, 646, 696, 699, 858, 960, 1128, 1368
GsaI CCCAGC 2 cut(s) 224, 864
HaeIII GGCC 4 cut(s) 162, 1110, 1291, 1452
HapII CCGG 2 cut(s) 228, 731
HgaI GACGC 2 cut(s) 3, 116
HhaI GCGC 1 cut(s) 904
Hin1II CATG 8 cut(s) 25, 67, 106, 255, 259, 642, 990, 1564
Hin6I GCGC 1 cut(s) 902
HinP1I GCGC 1 cut(s) 902
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 2 cut(s) 1066, 1145
HpaII CCGG 2 cut(s) 228, 731
HphI GGTGA 4 cut(s) 455, 460, 518, 751
Hpy166II GTNNAC 5 cut(s) 214, 451, 742, 794, 980
Hpy188I TCNGA 9 cut(s) 11, 184, 334, 369, 552, 670, 766, 1244, 1414
Hpy188III TCNNGA 5 cut(s) 884, 1063, 1157, 1252, 1272
Hpy8I GTNNAC 5 cut(s) 214, 451, 742, 794, 980
HpyAV CCTTC 6 cut(s) 16, 722, 1013, 1088, 1442, 1505
HpyCH4III ACNGT 5 cut(s) 247, 540, 652, 868, 1237
HpyCH4IV ACGT 3 cut(s) 151, 496, 744
HpyF3I CTNAG 6 cut(s) 126, 350, 483, 702, 1241, 1320
HpySE526I ACGT 3 cut(s) 151, 496, 744
Hsp92II CATG 8 cut(s) 25, 67, 106, 255, 259, 642, 990, 1564
HspAI GCGC 1 cut(s) 902
Kzo9I GATC 3 cut(s) 32, 364, 807
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 7 cut(s) 48, 315, 339, 412, 1175, 1193, 1477
Lsp1109I GCAGC 9 cut(s) 448, 568, 632, 707, 710, 869, 971, 1139, 1354
LweI GCATC 7 cut(s) 175, 268, 766, 913, 1033, 1150, 1347
MaeII ACGT 3 cut(s) 151, 496, 744
MaeIII GTNAC 2 cut(s) 580, 1577
MalI GATC 3 cut(s) 34, 366, 809
MboI GATC 3 cut(s) 32, 364, 807
MboII GAAGA 2 cut(s) 279, 398
MhlI GDGCHC 3 cut(s) 708, 1112, 1180
MluCI AATT 6 cut(s) 402, 513, 768, 783, 1034, 1455
MmeI TCCRAC 1 cut(s) 814
Mph1103I ATGCAT 2 cut(s) 190, 257
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 6 cut(s) 39, 132, 782, 870, 1115, 1548
MspA1I CMGCKG 2 cut(s) 701, 860
MspI CCGG 2 cut(s) 228, 731
MspR9I CCNGG 5 cut(s) 158, 589, 732, 932, 1106
Mva1269I GAATGC 2 cut(s) 763, 1389
MvaI CCWGG 4 cut(s) 158, 589, 932, 1106
MvnI CGCG 1 cut(s) 110
NciI CCSGG 1 cut(s) 732
NcoI CCATGG 1 cut(s) 21
NdeII GATC 3 cut(s) 32, 364, 807
NlaIII CATG 8 cut(s) 25, 67, 106, 255, 259, 642, 990, 1564
NlaIV GGNNCC 5 cut(s) 1110, 1195, 1299, 1473, 1516
NsiI ATGCAT 2 cut(s) 190, 257
NspI RCATGY 3 cut(s) 67, 642, 990
PceI AGGCCT 1 cut(s) 1452
PciI ACATGT 1 cut(s) 986
PciSI GCTCTTC 1 cut(s) 381
PctI GAATGC 2 cut(s) 763, 1389
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 1066, 1145
PkrI GCNGC 9 cut(s) 463, 558, 647, 697, 700, 859, 961, 1129, 1369
Ppu21I YACGTR 1 cut(s) 152
PscI ACATGT 1 cut(s) 986
PsiI TTATAA 1 cut(s) 239
Psp124BI GAGCTC 1 cut(s) 708
Psp6I CCWGG 4 cut(s) 156, 587, 930, 1104
PspFI CCCAGC 2 cut(s) 220, 860
PspGI CCWGG 4 cut(s) 156, 587, 930, 1104
PspN4I GGNNCC 5 cut(s) 1110, 1195, 1299, 1473, 1516
PspOMI GGGCCC 1 cut(s) 1108
PspPI GGNCC 6 cut(s) 160, 626, 1102, 1108, 1109, 1289
PstNI CAGNNNCTG 3 cut(s) 701, 1069, 1581
PvuII CAGCTG 2 cut(s) 701, 860
RsaI GTAC 2 cut(s) 1014, 1134
RsaNI GTAC 2 cut(s) 1013, 1133
SacI GAGCTC 1 cut(s) 708
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 6 cut(s) 39, 132, 782, 870, 1115, 1548
SatI GCNGC 9 cut(s) 462, 557, 646, 696, 699, 858, 960, 1128, 1368
Sau3AI GATC 3 cut(s) 32, 364, 807
Sau96I GGNCC 6 cut(s) 160, 626, 1102, 1108, 1109, 1289
ScrFI CCNGG 5 cut(s) 158, 589, 732, 932, 1106
SduI GDGCHC 3 cut(s) 708, 1112, 1180
SfaNI GCATC 7 cut(s) 175, 268, 766, 913, 1033, 1150, 1347
SfcI CTRYAG 2 cut(s) 561, 1233
SinI GGWCC 2 cut(s) 626, 1102
SnaBI TACGTA 1 cut(s) 152
Sse9I AATT 6 cut(s) 402, 513, 768, 783, 1034, 1455
SseBI AGGCCT 1 cut(s) 1452
SsiI CCGC 2 cut(s) 616, 1336
SspI AATATT 1 cut(s) 1538
SstI GAGCTC 1 cut(s) 708
StuI AGGCCT 1 cut(s) 1452
StyD4I CCNGG 5 cut(s) 156, 587, 730, 930, 1104
StyI CCWWGG 3 cut(s) 21, 408, 1210
TaaI ACNGT 5 cut(s) 247, 540, 652, 868, 1237
TaiI ACGT 3 cut(s) 154, 499, 747
TaqI TCGA 3 cut(s) 31, 1143, 1460
TasI AATT 6 cut(s) 402, 513, 768, 783, 1034, 1455
TatI WGTACW 1 cut(s) 1132
TfiI GAWTC 2 cut(s) 1066, 1145
Tru1I TTAA 6 cut(s) 39, 132, 782, 870, 1115, 1548
Tru9I TTAA 6 cut(s) 39, 132, 782, 870, 1115, 1548
TscAI CASTG 3 cut(s) 331, 606, 1096
TseI GCWGC 9 cut(s) 461, 556, 645, 695, 698, 857, 959, 1127, 1367
TspDTI ATGAA 3 cut(s) 1137, 1461, 1548
TspGWI ACGGA 1 cut(s) 959
TspRI CASTG 3 cut(s) 331, 606, 1096
VpaK11BI GGWCC 2 cut(s) 626, 1102
XapI RAATTY 1 cut(s) 1034
XceI RCATGY 3 cut(s) 67, 642, 990
XcmI CCANNNNNNNNNTGG 2 cut(s) 164, 1525
XmnI GAANNNNTTC 1 cut(s) 116
Zsp2I ATGCAT 2 cut(s) 190, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.