Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011388

Physical Location & Seq

Genomic Coordinates Reverse (-)

21899892 .. 21901568

Gene Structure 1677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCTACCTTTCCTTTTAAATTCTACAAATAATATCATGCATGCCTTTCTTTTTCAGGGTGCAAATTTACATATAAATCTGCATATATCAAGGAGGAGGATGATGGCTGCAGGAAATGGACAATTGACGGTTCCTCCAGGGTTTCGATTCCATCCGACAGATGAGGAGCTTCTCTACTATTACCTCAGGAAGAAAGTGTCTTATGAAGCCATCGACCTTGATGTTATTAGGGAGGTGGATCTCAACAAACTCGAACCCTGGGACCTCAAAGAGAAATGCAGAATAGGGTCAGGGCCTCAGAATGACTGGTACTTCTTCAGCCACAAGGATAAGAAATATCCAACAGGAACTCGTACAAACCGCGCAACCACAGCTGGGTTTTGGAAGGCAACTGGGAGAGACAAAGCGATCCACCTCACCAGTTCCAAGAGAATTGGCATGAGGAAAACCCTAGTCTTTTACACTGGCCGTGCTCCCCATGGCCAAAAGACCGACTGGATCATGCACGAGTATCGCCTCGAAGATGACAACATTACTGCTGATCAAGTTCAGGAAGATGGGTGGGTGGTATGTAGGGTTTTCAAGAAGAAGAATCACAACAGAGGTTATCAACCAGAATTTGCTCATCATCAAGATCGATCAAGATCATCAAGACCACGATCACTTCACGAACATGAAGGCAAGTGGTTCTCATGTCCCGATACTACTAGATCATCACGATTATCATCAGCAAAAACAAAATCACCATCATCTGGAAGGACTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

256

Amino Acids

29.71

Weight (kDa)

9.83

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	45 - 173	1.3e-46	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79580 AT1G79580 AT1G79580 AT1G79580 AT1G79580
fragaria_vesca	FvH4_3g13550
malus_domestica	MD00G1085300.v1.1 MD10G1220600.v1.1
prunus_persica	Prupe.4G123700_v2.0.a1 Prupe.4G123700_v2.0.a1
pyrus_communis	pycom05g21770 pycom10g18650
rosa_chinensis	RchiOBHm_Chr5g0022511
rosa_laevigata	RLG00000032667
rosa_multiflora	Rmu_sc0011329.1_g000004
rosa_rugosa	Rorug05G0074400
rosa_samantha	Rh5AG161200 Rh5CG174500
rosa_wichuraiana	Rw0G005560 Rw5G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	752
AccII	CGCG	1 cut(s)	363
AciI	CCGC	1 cut(s)	361
AclWI	GGATC	3 cut(s)	246, 403, 506
AcoI	YGGCCR	2 cut(s)	466, 481
AcsI	RAATTY	3 cut(s)	19, 64, 617
AcuI	CTGAAG	1 cut(s)	301
AfaI	GTAC	2 cut(s)	311, 355
AfiI	CCNNNNNNNGG	2 cut(s)	375, 752
AgsI	TTSAA	1 cut(s)	583
AjnI	CCWGG	2 cut(s)	136, 257
AluBI	AGCT	2 cut(s)	169, 374
AluI	AGCT	2 cut(s)	169, 374
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	3 cut(s)	246, 403, 506
AoxI	GGCC	3 cut(s)	293, 466, 481
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	3 cut(s)	19, 64, 617
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	2 cut(s)	262, 293
AsuHPI	GGTGA	2 cut(s)	409, 735
AvaII	GGWCC	1 cut(s)	262
AxyI	CCTNAGG	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	483
BauI	CACGAG	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	5 cut(s)	97, 159, 218, 551, 754
BceAI	ACGGC	1 cut(s)	453
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	2 cut(s)	138, 259
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	2 cut(s)	452, 708
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	138, 259
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	262, 293
BmiI	GGNNCC	2 cut(s)	132, 263
BmrFI	CCNGG	2 cut(s)	138, 259
BmrI	ACTGGG	1 cut(s)	402
BmuI	ACTGGG	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	637
BsaBI	GATNNNNATC	2 cut(s)	643, 724
BsaJI	CCNNGG	4 cut(s)	137, 257, 258, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 752
Bse1I	ACTGG	5 cut(s)	311, 397, 420, 469, 500
Bse21I	CCTNAGG	1 cut(s)	185
Bse8I	GATNNNNATC	2 cut(s)	643, 724
BseBI	CCWGG	2 cut(s)	138, 259
BseCI	ATCGAT	1 cut(s)	637
BseDI	CCNNGG	4 cut(s)	137, 257, 258, 478
BseGI	GGATG	2 cut(s)	105, 151
BseJI	GATNNNNATC	2 cut(s)	643, 724
BseLI	CCNNNNNNNGG	2 cut(s)	375, 752
BseMII	CTCAG	2 cut(s)	199, 311
BseNI	ACTGG	5 cut(s)	311, 397, 420, 469, 500
BseRI	GAGGAG	2 cut(s)	109, 179
BseXI	GCAGC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	374
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	3 cut(s)	295, 468, 483
BshVI	ATCGAT	1 cut(s)	637
BsiHKAI	GWGCWC	1 cut(s)	475
BslFI	GGGAC	2 cut(s)	275, 681
BslI	CCNNNNNNNGG	2 cut(s)	375, 752
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	2 cut(s)	275, 681
BsnI	GGCC	3 cut(s)	295, 468, 483
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	9 cut(s)	238, 408, 498, 541, 634, 638, 644, 659, 710
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	3 cut(s)	295, 468, 483
BspCNI	CTCAG	2 cut(s)	198, 310
BspDI	ATCGAT	1 cut(s)	637
BspFNI	CGCG	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	132, 263
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	3 cut(s)	246, 403, 506
BsrI	ACTGG	5 cut(s)	311, 397, 420, 469, 500
BssECI	CCNNGG	4 cut(s)	137, 257, 258, 478
BssMI	GATC	9 cut(s)	238, 408, 498, 541, 634, 638, 644, 659, 710
BssSI	CACGAG	1 cut(s)	506
BssT1I	CCWWGG	1 cut(s)	478
Bst2BI	CACGAG	1 cut(s)	506
Bst2UI	CCWGG	2 cut(s)	138, 259
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	185, 297
BstDSI	CCRYGG	1 cut(s)	478
BstF5I	GGATG	2 cut(s)	105, 151
BstFNI	CGCG	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	9 cut(s)	241, 411, 501, 544, 637, 641, 647, 662, 713
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	9 cut(s)	238, 408, 498, 541, 634, 638, 644, 659, 710
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	2 cut(s)	138, 259
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	2 cut(s)	136, 257
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	637
Bsu36I	CCTNAGG	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	295, 468, 483
BsuTUI	ATCGAT	1 cut(s)	637
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	2 cut(s)	105, 151
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	262, 293
ClaI	ATCGAT	1 cut(s)	637
Csp6I	GTAC	2 cut(s)	310, 354
CviAII	CATG	7 cut(s)	37, 41, 439, 479, 502, 674, 693
CviJI	RGCY	8 cut(s)	107, 169, 209, 295, 321, 374, 468, 483
CviKI_1	RGCY	8 cut(s)	107, 169, 209, 295, 321, 374, 468, 483
CviQI	GTAC	2 cut(s)	310, 354
DdeI	CTNAG	2 cut(s)	185, 297
DpnI	GATC	9 cut(s)	240, 410, 500, 543, 636, 640, 646, 661, 712
DpnII	GATC	9 cut(s)	238, 408, 498, 541, 634, 638, 644, 659, 710
DraI	TTTAAA	1 cut(s)	18
EaeI	YGGCCR	2 cut(s)	466, 481
Eco130I	CCWWGG	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	301
Eco81I	CCTNAGG	1 cut(s)	185
EcoO109I	RGGNCCY	2 cut(s)	262, 293
EcoRII	CCWGG	2 cut(s)	136, 257
EcoT14I	CCWWGG	1 cut(s)	478
EcoT22I	ATGCAT	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	7 cut(s)	40, 44, 442, 482, 505, 677, 696
FaqI	GGGAC	2 cut(s)	275, 681
FatI	CATG	7 cut(s)	36, 40, 438, 478, 501, 673, 692
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	2 cut(s)	112, 138
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	452, 708
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	1 cut(s)	108
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	3 cut(s)	295, 468, 483
HhaI	GCGC	1 cut(s)	365
Hin1II	CATG	7 cut(s)	40, 44, 442, 482, 505, 677, 696
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HinfI	GANTC	2 cut(s)	147, 592
HphI	GGTGA	2 cut(s)	409, 735
Hpy188I	TCNGA	2 cut(s)	156, 300
HpyAV	CCTTC	3 cut(s)	379, 671, 750
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	6 cut(s)	40, 62, 82, 110, 279, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	2 cut(s)	185, 297
Hsp92II	CATG	7 cut(s)	40, 44, 442, 482, 505, 677, 696
HspAI	GCGC	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	9 cut(s)	238, 408, 498, 541, 634, 638, 644, 659, 710
LmnI	GCTCC	2 cut(s)	166, 478
Lsp1109I	GCAGC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	452, 708
MalI	GATC	9 cut(s)	240, 410, 500, 543, 636, 640, 646, 661, 712
MboI	GATC	9 cut(s)	238, 408, 498, 541, 634, 638, 644, 659, 710
MboII	GAAGA	6 cut(s)	202, 307, 533, 566, 598, 601
MfeI	CAATTG	1 cut(s)	122
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	475
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	5 cut(s)	19, 64, 122, 432, 617
MluNI	TGGCCA	1 cut(s)	483
MmeI	TCCRAC	2 cut(s)	179, 365
Mox20I	TGGCCA	1 cut(s)	483
Mph1103I	ATGCAT	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	672
Msp20I	TGGCCA	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	374
MspR9I	CCNGG	2 cut(s)	138, 259
MunI	CAATTG	1 cut(s)	122
MvaI	CCWGG	2 cut(s)	138, 259
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	9 cut(s)	238, 408, 498, 541, 634, 638, 644, 659, 710
NlaIII	CATG	7 cut(s)	40, 44, 442, 482, 505, 677, 696
NlaIV	GGNNCC	2 cut(s)	132, 263
NsiI	ATGCAT	1 cut(s)	42
NspI	RCATGY	1 cut(s)	44
PaeI	GCATGC	1 cut(s)	44
PasI	CCCWGGG	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	147, 592
PflMI	CCANNNNNTGG	1 cut(s)	752
PkrI	GCNGC	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	2 cut(s)	136, 257
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	2 cut(s)	136, 257
PspN4I	GGNNCC	2 cut(s)	132, 263
PspPI	GGNCC	2 cut(s)	262, 293
PspPPI	RGGWCCY	1 cut(s)	262
PstI	CTGCAG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	2 cut(s)	311, 355
RsaNI	GTAC	2 cut(s)	310, 354
RseI	CAYNNNNRTG	1 cut(s)	672
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	9 cut(s)	238, 408, 498, 541, 634, 638, 644, 659, 710
Sau96I	GGNCC	2 cut(s)	262, 293
ScrFI	CCNGG	2 cut(s)	138, 259
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	9 cut(s)	10, 171, 186, 219, 237, 267, 376, 417, 607
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	672
SphI	GCATGC	1 cut(s)	44
Sse9I	AATT	5 cut(s)	19, 64, 122, 432, 617
SsiI	CCGC	1 cut(s)	361
SspMI	CTAG	2 cut(s)	452, 708
StyD4I	CCNGG	2 cut(s)	136, 257
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	5 cut(s)	145, 213, 252, 519, 637
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	5 cut(s)	19, 64, 122, 432, 617
TfiI	GAWTC	2 cut(s)	147, 592
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	469
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	219, 690
TspRI	CASTG	1 cut(s)	469
Van91I	CCANNNNNTGG	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	3 cut(s)	19, 64, 617
XceI	RCATGY	1 cut(s)	44
XspI	CTAG	2 cut(s)	452, 708
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.