Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009171

Physical Location & Seq

Genomic Coordinates Reverse (-)

22035718 .. 22037475

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTCTTTAACAGTGTCTCGTCGGACGAAAGTTCCCAAATTCCAGAGGGATCGACAATGAAGCAGCAATCCAAGGACCCATTCGAAGCGGCGTTCGAGGAGCAAGAAGACGACTCACCGCCCGATTCTCCAGCCGTCGCTGAAGCCGCGCGCGCCGCCTTTGGTGCCCTAGAAGAGGACGACCCTCTTCTTGTTCCTGGCCCGTCATCTTCGTCCGCGCCATCAGCTGCAGCGCCGAAAGCAACAGCAGTTACCAGAACAAGAACAACGCCAACTTCTTCTGCGACGGCGCCCTCCGCCTCTGCTCGGCCCGCTGTCAAGAACAAGGATGACGACGACGATGACGACGAAGACAACATGGATGTCGAGCTCGGAAAGTTCTCCGCCACCGGTGATCCTGACAAAATGGCCAAGATGCAGGCTATTTTATCGCAGTTCTCAGAGGAACAGATGAGTAGGTACGAGTCGTTTCGCAGAGCTGGATTTCAGAGAGCCAACATGAAAAGGTTGTTAACTAGCATTAGTGGAACTCCAAAAATATCTGCGCCAATGAATATTGTAGTGTCAGGGATAGCAAAGATGTTTGTTGGTGAACTTGTTGAGACAGCCAGAATAGTGATGTCGGAGAGGAAAGAGTCTGGGCCAATCAGGCCATGCCACCTTAGGGAAGCATACAGAAGGTTGAAGCTTGAAGGGAAGGTACCAAAGAGATCACCGTCTAGGCTCTTCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TAFII28

Protein Analysis

245

Amino Acids

26.5

Weight (kDa)

5.21

Isoelectric Point (pI)

68.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAFII28	PF04719	142 - 227	1e-32	hTAFII28-like protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20000 AT4G20280
fragaria_vesca	FvH4_3g13420 FvH4_3g13420 FvH4_3g13420
malus_domestica	MD10G1223700.v1.1
prunus_persica	Prupe.4G121600_v2.0.a1
pyrus_communis	pycom10g18760
rosa_chinensis	RchiOBHm_Chr5g0022151
rosa_laevigata	RLG00000032648
rosa_multiflora	Rmu_co8448675.1_g000001 Rmu_sc0006966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00056780
rosa_rugosa	Rorug05G0071600 Rorug05G0071700 Rorug05G0071800 Rorug05G0071900
rosa_samantha	Rh5AG159700 Rh5BG159200 Rh5CG173400 Rh5DG159200
rosa_wichuraiana	Rw5G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	700
AccB1I	GGYRCC	3 cut(s)	164, 289, 700
AccII	CGCG	4 cut(s)	149, 151, 153, 218
AciI	CCGC	8 cut(s)	89, 119, 147, 156, 216, 297, 312, 384
AclWI	GGATC	2 cut(s)	58, 389
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	290
AfaI	GTAC	2 cut(s)	461, 702
AfiI	CCNNNNNNNGG	3 cut(s)	175, 306, 664
AgeI	ACCGGT	1 cut(s)	389
AgsI	TTSAA	2 cut(s)	685, 692
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	4 cut(s)	227, 370, 479, 688
AluI	AGCT	4 cut(s)	227, 370, 479, 688
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	22, 596
AlwI	GGATC	2 cut(s)	58, 389
AoxI	GGCC	5 cut(s)	199, 308, 408, 641, 650
ApeKI	GCWGC	3 cut(s)	64, 227, 230
ApoI	RAATTY	1 cut(s)	39
AsiGI	ACCGGT	1 cut(s)	389
Asp718I	GGTACC	1 cut(s)	700
AspLEI	GCGC	7 cut(s)	151, 153, 155, 220, 235, 292, 547
AspS9I	GGNCC	4 cut(s)	76, 200, 309, 641
AsuHPI	GGTGA	4 cut(s)	108, 404, 602, 705
AsuII	TTCGAA	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	76
AxyI	CCTNAGG	1 cut(s)	662
BaeGI	GKGCMC	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	410
BanI	GGYRCC	3 cut(s)	164, 289, 700
BanII	GRGCYC	1 cut(s)	372
BarI	GAAGNNNNNNTAC	2 cut(s)	684, 716
BbsI	GAAGAC	2 cut(s)	114, 357
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	76, 214, 242
BccI	CCATC	1 cut(s)	229
BceAI	ACGGC	2 cut(s)	119, 303
BciT130I	CCWGG	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	22, 596
BfaI	CTAG	3 cut(s)	170, 516, 720
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	2 cut(s)	236, 293
BglI	GCCNNNNNGGC	1 cut(s)	649
BisI	GCNGC	6 cut(s)	65, 90, 147, 156, 228, 231
BlsI	GCNGC	6 cut(s)	66, 91, 148, 157, 229, 232
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	4 cut(s)	76, 200, 309, 641
BmiI	GGNNCC	4 cut(s)	78, 166, 291, 702
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	405
BpiI	GAAGAC	2 cut(s)	114, 357
BpmI	CTGGAG	1 cut(s)	114
Bpu14I	TTCGAA	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	2 cut(s)	389, 729
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 306, 664
Bse118I	RCCGGY	1 cut(s)	389
Bse21I	CCTNAGG	1 cut(s)	662
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	334, 367
BseLI	CCNNNNNNNGG	3 cut(s)	175, 306, 664
BseMII	CTCAG	1 cut(s)	453
BsePI	GCGCGC	2 cut(s)	149, 151
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	3 cut(s)	76, 214, 242
Bsh1236I	CGCG	4 cut(s)	149, 151, 153, 218
BshFI	GGCC	5 cut(s)	201, 310, 410, 643, 652
BshNI	GGYRCC	3 cut(s)	164, 289, 700
BshTI	ACCGGT	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	2 cut(s)	390, 730
BslI	CCNNNNNNNGG	3 cut(s)	175, 306, 664
BsmAI	GTCTC	2 cut(s)	22, 596
BsnI	GGCC	5 cut(s)	201, 310, 410, 643, 652
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	2 cut(s)	169, 372
Bsp143I	GATC	3 cut(s)	50, 394, 710
BspACI	CCGC	8 cut(s)	89, 119, 147, 156, 216, 297, 312, 384
BspANI	GGCC	5 cut(s)	201, 310, 410, 643, 652
BspCNI	CTCAG	1 cut(s)	452
BspFNI	CGCG	4 cut(s)	149, 151, 153, 218
BspLI	GGNNCC	4 cut(s)	78, 166, 291, 702
BspMAI	CTGCAG	1 cut(s)	232
BspPI	GGATC	2 cut(s)	58, 389
BspQI	GCTCTTC	1 cut(s)	731
BspT104I	TTCGAA	1 cut(s)	84
BspT107I	GGYRCC	3 cut(s)	164, 289, 700
BsrFI	RCCGGY	1 cut(s)	389
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	72
BssHII	GCGCGC	2 cut(s)	149, 151
BssMI	GATC	3 cut(s)	50, 394, 710
BssNI	GRCGYC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	14, 717
Bst6I	CTCTTC	3 cut(s)	168, 192, 731
BstACI	GRCGYC	1 cut(s)	290
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	4 cut(s)	151, 153, 312, 420
BstDEI	CTNAG	2 cut(s)	439, 662
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	334, 367
BstFNI	CGCG	4 cut(s)	149, 151, 153, 218
BstH2I	RGCGCY	2 cut(s)	236, 293
BstHHI	GCGC	7 cut(s)	151, 153, 155, 220, 235, 292, 547
BstKTI	GATC	3 cut(s)	53, 397, 713
BstMAI	GTCTC	2 cut(s)	22, 596
BstMBI	GATC	3 cut(s)	50, 394, 710
BstMWI	GCNNNNNNNGC	9 cut(s)	146, 152, 155, 164, 224, 239, 296, 311, 649
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	4 cut(s)	149, 151, 153, 218
BstV1I	GCAGC	3 cut(s)	76, 214, 242
BstV2I	GAAGAC	2 cut(s)	114, 357
Bsu36I	CCTNAGG	1 cut(s)	662
BsuRI	GGCC	5 cut(s)	201, 310, 410, 643, 652
BtsCI	GGATG	2 cut(s)	334, 367
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	4 cut(s)	151, 153, 312, 420
CfoI	GCGC	7 cut(s)	151, 153, 155, 220, 235, 292, 547
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	4 cut(s)	76, 200, 309, 641
Csp6I	GTAC	2 cut(s)	460, 701
CspAI	ACCGGT	1 cut(s)	389
CviAII	CATG	3 cut(s)	358, 499, 654
CviQI	GTAC	2 cut(s)	460, 701
DdeI	CTNAG	2 cut(s)	439, 662
DinI	GGCGCC	1 cut(s)	291
DpnI	GATC	3 cut(s)	52, 396, 712
DpnII	GATC	3 cut(s)	50, 394, 710
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	3 cut(s)	168, 192, 731
EarI	CTCTTC	3 cut(s)	168, 192, 731
EciI	GGCGGA	2 cut(s)	286, 373
Ecl136II	GAGCTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	162
Eco81I	CCTNAGG	1 cut(s)	662
EcoICRI	GAGCTC	1 cut(s)	370
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	372
EgeI	GGCGCC	1 cut(s)	291
EheI	GGCGCC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	361, 502, 657
FaiI	YATR	4 cut(s)	359, 500, 655, 673
FatI	CATG	3 cut(s)	357, 498, 653
FauI	CCCGC	1 cut(s)	319
Fnu4HI	GCNGC	6 cut(s)	65, 90, 147, 156, 228, 231
FokI	GGATG	2 cut(s)	341, 374
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	6 cut(s)	65, 90, 147, 156, 228, 231
FspBI	CTAG	3 cut(s)	170, 516, 720
GlaI	GCGC	7 cut(s)	150, 152, 154, 219, 234, 291, 546
GluI	GCNGC	6 cut(s)	65, 90, 147, 156, 228, 231
GsuI	CTGGAG	1 cut(s)	114
HaeII	RGCGCY	2 cut(s)	236, 293
HaeIII	GGCC	5 cut(s)	201, 310, 410, 643, 652
HapII	CCGG	2 cut(s)	390, 730
HhaI	GCGC	7 cut(s)	151, 153, 155, 220, 235, 292, 547
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	3 cut(s)	361, 502, 657
Hin6I	GCGC	7 cut(s)	149, 151, 153, 218, 233, 290, 545
HinP1I	GCGC	7 cut(s)	149, 151, 153, 218, 233, 290, 545
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	4 cut(s)	113, 125, 464, 635
HpaI	GTTAAC	1 cut(s)	513
HpaII	CCGG	2 cut(s)	390, 730
HphI	GGTGA	4 cut(s)	108, 404, 602, 705
Hpy166II	GTNNAC	2 cut(s)	513, 593
Hpy188I	TCNGA	5 cut(s)	25, 374, 442, 489, 625
Hpy188III	TCNNGA	3 cut(s)	44, 319, 398
Hpy8I	GTNNAC	2 cut(s)	513, 593
Hpy99I	CGWCG	6 cut(s)	25, 140, 289, 338, 341, 350
HpyAV	CCTTC	3 cut(s)	672, 686, 691
HpyCH4III	ACNGT	2 cut(s)	14, 717
HpyCH4V	TGCA	2 cut(s)	230, 418
HpyF10VI	GCNNNNNNNGC	9 cut(s)	146, 152, 155, 164, 224, 239, 296, 311, 649
HpyF3I	CTNAG	2 cut(s)	439, 662
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	3 cut(s)	361, 502, 657
HspAI	GCGC	7 cut(s)	149, 151, 153, 218, 233, 290, 545
KasI	GGCGCC	1 cut(s)	289
KpnI	GGTACC	1 cut(s)	704
KspAI	GTTAAC	1 cut(s)	513
Kzo9I	GATC	3 cut(s)	50, 394, 710
LguI	GCTCTTC	1 cut(s)	731
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	3 cut(s)	76, 214, 242
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	3 cut(s)	170, 516, 720
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	3 cut(s)	52, 396, 712
MauBI	CGCGCGCG	1 cut(s)	149
MboI	GATC	3 cut(s)	50, 394, 710
MboII	GAAGA	7 cut(s)	119, 179, 185, 201, 270, 362, 718
MhlI	GDGCHC	2 cut(s)	169, 372
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	1 cut(s)	39
MluNI	TGGCCA	1 cut(s)	410
Mly113I	GGCGCC	1 cut(s)	290
MlyI	GAGTC	3 cut(s)	107, 473, 644
MmeI	TCCRAC	1 cut(s)	603
MnlI	CCTC	8 cut(s)	40, 91, 169, 195, 304, 310, 436, 621
Mox20I	TGGCCA	1 cut(s)	410
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	2 cut(s)	9, 512
Msp20I	TGGCCA	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	227, 314
MspI	CCGG	2 cut(s)	390, 730
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	4 cut(s)	149, 151, 153, 218
MwoI	GCNNNNNNNGC	9 cut(s)	146, 152, 155, 164, 224, 239, 296, 311, 649
NarI	GGCGCC	1 cut(s)	290
NdeII	GATC	3 cut(s)	50, 394, 710
NlaIII	CATG	3 cut(s)	361, 502, 657
NlaIV	GGNNCC	4 cut(s)	78, 166, 291, 702
NmeAIII	GCCGAG	1 cut(s)	286
NspV	TTCGAA	1 cut(s)	84
PauI	GCGCGC	2 cut(s)	149, 151
PciSI	GCTCTTC	1 cut(s)	731
PcsI	WCGNNNNNNNCGW	2 cut(s)	342, 345
PfeI	GAWTC	1 cut(s)	125
PinAI	ACCGGT	1 cut(s)	389
PkrI	GCNGC	6 cut(s)	66, 91, 148, 157, 229, 232
PleI	GAGTC	3 cut(s)	107, 472, 643
PluTI	GGCGCC	1 cut(s)	293
PpsI	GAGTC	3 cut(s)	107, 472, 643
PpuMI	RGGWCCY	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	4 cut(s)	78, 166, 291, 702
PspPI	GGNCC	4 cut(s)	76, 200, 309, 641
PspPPI	RGGWCCY	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	232
PteI	GCGCGC	2 cut(s)	149, 151
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	461, 702
RsaNI	GTAC	2 cut(s)	460, 701
SacI	GAGCTC	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	731
SaqAI	TTAA	2 cut(s)	9, 512
SatI	GCNGC	6 cut(s)	65, 90, 147, 156, 228, 231
Sau3AI	GATC	3 cut(s)	50, 394, 710
Sau96I	GGNCC	4 cut(s)	76, 200, 309, 641
SchI	GAGTC	3 cut(s)	107, 473, 644
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	2 cut(s)	169, 372
SetI	ASST	9 cut(s)	229, 372, 461, 481, 509, 663, 683, 690, 702
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	228
SfiI	GGCCNNNNNGGCC	1 cut(s)	649
SfoI	GGCGCC	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	84
SgrAI	CRCCGGYG	1 cut(s)	389
SinI	GGWCC	1 cut(s)	76
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	8 cut(s)	89, 119, 147, 156, 216, 297, 312, 384
SspDI	GGCGCC	1 cut(s)	289
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	3 cut(s)	170, 516, 720
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	14, 717
TaqI	TCGA	4 cut(s)	53, 84, 96, 366
TasI	AATT	1 cut(s)	39
TauI	GCSGC	3 cut(s)	92, 149, 158
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	9, 512
Tru9I	TTAA	2 cut(s)	9, 512
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	3 cut(s)	64, 227, 230
TspDTI	ATGAA	3 cut(s)	74, 515, 566
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	76
XagI	CCTNNNNNAGG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	39
XspI	CTAG	3 cut(s)	170, 516, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.