pycom10g20920

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0017622
Physical Location & Seq
Forward (+)
23682081 .. 23683060
980 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGCATCCCGTCTCTCAGAAACTCTCTCAGGAGCGCGTGAGACTAACACCCCGACCCCCCAATCCCCTCTCTATGCGTGAAATTGAAGCATGCAATTGTCACCTCTCTCTCTCTCTCTCAAGCTGTCATGTCATGCAGAAAGAGAAACACAGGGAGCGCATGCAGATCCCAGGAACCATCACCACCGTCCAATCCCACCTGTCTTCAAGAGATAACAGTGAGCAGAAGAAGAAGCGGAGAGAGAGAGAGGAAATGGCGGGAACGAGTGGGAGTGGGAGGAGCGAGAGCGAGAAAGAGAAGACCAAGATGAGGGAGAGGCAGAGGAGGGCCATCACCACCAAAATCTTCCACGGCTTGCGCAAGCACGGCGGCTACCGCCTCTCTCCCCGCGGCGACATCAACGAGGTGCTCCGGCATCTCGCCACAGAGGCTGGCTGGCTCGTTGAACCCGACGGCACTACCTACCGCCCACCCAACGCTCCTAATTGCTGCCCGGCTTGTGGAACCCCCAAAGCGACCACTCCAGTGGCAACAGCGACACCAACCCCAAGCAGTAGCGTGGTGGTTGGAGGTGGTGATTGTTCAACCACAGCATCTCCAAGTCGATTCCCCGCCTTCAACACCACCACCAACACCAGCAGTATGAGCGTCTACTCGCCATTGTACATGTATGAAGGCGGGCACCCGCAACTGCAGGAAGCCAGGGCCTCGAACAATACCACTCCTGTTGCTTCGCCTCCGCATCACCGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

252

Amino Acids

27.68

Weight (kDa)

9.73

Isoelectric Point (pI)

70.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 91 - 204 1.2e-32 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10040
prunus_persica Prupe.4G089900_v2.0.a1
pyrus_communis pycom10g20920
rosa_chinensis RchiOBHm_Chr5g0015901
rosa_laevigata RLG00000032230
rosa_multiflora Rmu_sc0001878.1_g000013
rosa_roxburghii Rroxscaffold_1G00060690
rosa_rugosa Rorug05G0030100
rosa_samantha Rh5AG123700 Rh5CG134000 Rh5DG122000
rosa_wichuraiana Rw5G010680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 681
AccI GTMKAC 1 cut(s) 651
AccII CGCG 2 cut(s) 36, 390
AclWI GGATC 1 cut(s) 160
AfaI GTAC 1 cut(s) 665
AfiI CCNNNNNNNGG 2 cut(s) 309, 500
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 5 cut(s) 86, 207, 446, 585, 619
AjnI CCWGG 2 cut(s) 169, 701
AleI CACNNNNGTG 1 cut(s) 524
AluBI AGCT 1 cut(s) 123
AluI AGCT 1 cut(s) 123
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 2 cut(s) 16, 34
AlwI GGATC 1 cut(s) 160
AlwNI CAGNNNCTG 1 cut(s) 431
AoxI GGCC 2 cut(s) 327, 705
ApeKI GCWGC 1 cut(s) 489
AspLEI GCGC 3 cut(s) 36, 159, 360
AspS9I GGNCC 2 cut(s) 327, 705
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 5 cut(s) 92, 172, 325, 587, 737
BaeGI GKGCMC 1 cut(s) 684
BanI GGYRCC 1 cut(s) 681
BbsI GAAGAC 2 cut(s) 195, 305
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 476
BccI CCATC 2 cut(s) 185, 338
BceAI ACGGC 3 cut(s) 367, 382, 469
BciT130I CCWGG 2 cut(s) 171, 703
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 2 cut(s) 16, 34
BfmI CTRYAG 1 cut(s) 692
BglI GCCNNNNNGGC 1 cut(s) 428
BisI GCNGC 3 cut(s) 370, 391, 490
BlsI GCNGC 3 cut(s) 371, 392, 491
Bme1390I CCNGG 3 cut(s) 171, 494, 703
BmgT120I GGNCC 2 cut(s) 327, 705
BmiI GGNNCC 3 cut(s) 175, 505, 683
BmrFI CCNGG 3 cut(s) 171, 494, 703
BmsI GCATC 4 cut(s) 13, 424, 602, 751
BpiI GAAGAC 2 cut(s) 195, 305
BpmI CTGGAG 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 103
BpuMI CCSGG 1 cut(s) 494
BsaJI CCNNGG 4 cut(s) 169, 349, 388, 702
BsaXI ACNNNNNCTCC 2 cut(s) 580, 610
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 500
Bse1I ACTGG 1 cut(s) 524
BseBI CCWGG 2 cut(s) 171, 703
BseDI CCNNGG 4 cut(s) 169, 349, 388, 702
BseGI GGATG 1 cut(s) 4
BseLI CCNNNNNNNGG 2 cut(s) 309, 500
BseMII CTCAG 2 cut(s) 29, 41
BseNI ACTGG 1 cut(s) 524
BseRI GAGGAG 2 cut(s) 292, 337
BseSI GKGCMC 1 cut(s) 684
BseXI GCAGC 1 cut(s) 476
Bsh1236I CGCG 2 cut(s) 36, 390
BshFI GGCC 2 cut(s) 329, 707
BshNI GGYRCC 1 cut(s) 681
BsiHKAI GWGCWC 1 cut(s) 411
BsiSI CCGG 2 cut(s) 412, 494
BslI CCNNNNNNNGG 2 cut(s) 309, 500
BsmAI GTCTC 2 cut(s) 16, 34
BsmBI CGTCTC 1 cut(s) 16
BsnI GGCC 2 cut(s) 329, 707
Bsp1286I GDGCHC 2 cut(s) 411, 684
Bsp1407I TGTACA 1 cut(s) 663
Bsp143I GATC 1 cut(s) 165
BspANI GGCC 2 cut(s) 329, 707
BspCNI CTCAG 2 cut(s) 28, 40
BspFNI CGCG 2 cut(s) 36, 390
BspLI GGNNCC 3 cut(s) 175, 505, 683
BspMAI CTGCAG 1 cut(s) 696
BspPI GGATC 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 681
BsrGI TGTACA 1 cut(s) 663
BsrI ACTGG 1 cut(s) 524
BssECI CCNNGG 4 cut(s) 169, 349, 388, 702
BssMI GATC 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 171, 703
Bst4CI ACNGT 2 cut(s) 187, 218
BstAUI TGTACA 1 cut(s) 663
BstC8I GCNNGC 7 cut(s) 91, 161, 356, 362, 433, 437, 680
BstDEI CTNAG 3 cut(s) 15, 27, 753
BstDSI CCRYGG 2 cut(s) 349, 388
BstF5I GGATG 1 cut(s) 4
BstFNI CGCG 2 cut(s) 36, 390
BstHHI GCGC 3 cut(s) 36, 159, 360
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 2 cut(s) 16, 34
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 4 cut(s) 366, 375, 428, 645
BstNI CCWGG 2 cut(s) 171, 703
BstNSI RCATGY 3 cut(s) 93, 163, 670
BstSCI CCNGG 3 cut(s) 169, 492, 701
BstSFI CTRYAG 1 cut(s) 692
BstSLI GKGCMC 1 cut(s) 684
BstUI CGCG 2 cut(s) 36, 390
BstV1I GCAGC 1 cut(s) 476
BstV2I GAAGAC 2 cut(s) 195, 305
BstX2I RGATCY 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 526
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 2 cut(s) 329, 707
BtgI CCRYGG 2 cut(s) 349, 388
BtsCI GGATG 1 cut(s) 4
BtsIMutI CAGTG 2 cut(s) 223, 531
Cac8I GCNNGC 7 cut(s) 91, 161, 356, 362, 433, 437, 680
CaiI CAGNNNCTG 1 cut(s) 431
CfoI GCGC 3 cut(s) 36, 159, 360
Cfr13I GGNCC 2 cut(s) 327, 705
Cfr42I CCGCGG 1 cut(s) 391
CseI GACGC 1 cut(s) 637
Csp6I GTAC 1 cut(s) 664
CspCI CAANNNNNGTGG 2 cut(s) 709, 744
CviAII CATG 5 cut(s) 90, 128, 133, 160, 667
CviQI GTAC 1 cut(s) 664
DdeI CTNAG 3 cut(s) 15, 27, 753
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 705
EcoRII CCWGG 2 cut(s) 169, 701
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 5 cut(s) 93, 131, 136, 163, 670
FaiI YATR 8 cut(s) 74, 91, 129, 134, 161, 644, 668, 672
FatI CATG 5 cut(s) 89, 127, 132, 159, 666
FauI CCCGC 5 cut(s) 250, 395, 619, 671, 693
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 3 cut(s) 370, 391, 490
Fsp4HI GCNGC 3 cut(s) 370, 391, 490
FspI TGCGCA 1 cut(s) 359
GlaI GCGC 3 cut(s) 35, 158, 359
GluI GCNGC 3 cut(s) 370, 391, 490
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 2 cut(s) 329, 707
HapII CCGG 2 cut(s) 412, 494
HgaI GACGC 1 cut(s) 637
HhaI GCGC 3 cut(s) 36, 159, 360
Hin1II CATG 5 cut(s) 93, 131, 136, 163, 670
Hin6I GCGC 3 cut(s) 34, 157, 358
HinP1I GCGC 3 cut(s) 34, 157, 358
HinfI GANTC 1 cut(s) 606
HpaII CCGG 2 cut(s) 412, 494
HphI GGTGA 5 cut(s) 92, 172, 325, 587, 737
Hpy166II GTNNAC 1 cut(s) 652
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 2 cut(s) 29, 207
Hpy8I GTNNAC 1 cut(s) 652
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 2 cut(s) 625, 668
HpyCH4III ACNGT 2 cut(s) 187, 218
HpyCH4V TGCA 5 cut(s) 4, 93, 136, 163, 694
HpyF10VI GCNNNNNNNGC 4 cut(s) 366, 375, 428, 645
HpyF3I CTNAG 3 cut(s) 15, 27, 753
Hsp92II CATG 5 cut(s) 93, 131, 136, 163, 670
HspAI GCGC 3 cut(s) 34, 157, 358
KspI CCGCGG 1 cut(s) 391
Kzo9I GATC 1 cut(s) 165
LmnI GCTCC 5 cut(s) 31, 154, 279, 414, 484
Lsp1109I GCAGC 1 cut(s) 476
LweI GCATC 4 cut(s) 13, 424, 602, 751
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 5 cut(s) 195, 238, 241, 310, 337
MfeI CAATTG 1 cut(s) 94
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 2 cut(s) 411, 684
MluCI AATT 3 cut(s) 81, 94, 484
MmeI TCCRAC 1 cut(s) 547
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 524
MspA1I CMGCKG 1 cut(s) 390
MspI CCGG 2 cut(s) 412, 494
MspR9I CCNGG 3 cut(s) 171, 494, 703
MunI CAATTG 1 cut(s) 94
MvaI CCWGG 2 cut(s) 171, 703
MvnI CGCG 2 cut(s) 36, 390
MwoI GCNNNNNNNGC 4 cut(s) 366, 375, 428, 645
NciI CCSGG 1 cut(s) 494
NdeII GATC 1 cut(s) 165
NlaIII CATG 5 cut(s) 93, 131, 136, 163, 670
NlaIV GGNNCC 3 cut(s) 175, 505, 683
NmuCI GTSAC 1 cut(s) 98
NsbI TGCGCA 1 cut(s) 359
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 93, 163, 670
OliI CACNNNNGTG 1 cut(s) 524
PaeI GCATGC 2 cut(s) 93, 163
PciI ACATGT 1 cut(s) 666
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PfeI GAWTC 1 cut(s) 606
PkrI GCNGC 3 cut(s) 371, 392, 491
PscI ACATGT 1 cut(s) 666
Psp6I CCWGG 2 cut(s) 169, 701
PspGI CCWGG 2 cut(s) 169, 701
PspN4I GGNNCC 3 cut(s) 175, 505, 683
PspPI GGNCC 2 cut(s) 327, 705
PstI CTGCAG 1 cut(s) 696
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 1 cut(s) 165
RsaI GTAC 1 cut(s) 665
RsaNI GTAC 1 cut(s) 664
RseI CAYNNNNRTG 1 cut(s) 524
SacII CCGCGG 1 cut(s) 391
SatI GCNGC 3 cut(s) 370, 391, 490
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 2 cut(s) 327, 705
ScrFI CCNGG 3 cut(s) 171, 494, 703
SduI GDGCHC 2 cut(s) 411, 684
SetI ASST 6 cut(s) 105, 125, 201, 408, 464, 574
SfaNI GCATC 4 cut(s) 13, 424, 602, 751
SfcI CTRYAG 1 cut(s) 692
Sfr303I CCGCGG 1 cut(s) 391
SgrBI CCGCGG 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SphI GCATGC 2 cut(s) 93, 163
Sse9I AATT 3 cut(s) 81, 94, 484
StyD4I CCNGG 3 cut(s) 169, 492, 701
TaaI ACNGT 2 cut(s) 187, 218
TaqI TCGA 2 cut(s) 604, 710
TasI AATT 3 cut(s) 81, 94, 484
TatI WGTACW 1 cut(s) 663
TauI GCSGC 2 cut(s) 372, 393
TfiI GAWTC 1 cut(s) 606
TscAI CASTG 2 cut(s) 223, 531
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 489
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 687
TspRI CASTG 2 cut(s) 223, 531
XceI RCATGY 3 cut(s) 93, 163, 670
XmiI GTMKAC 1 cut(s) 651
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.