pycom10g21400

hmr,ptac12

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
24026336 .. 24031050
4715 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1602 bp
ATGGCATCTCTACCAGGAACTTGGCTGTATCAAGATAGGGGATTGATGGGTGTAGTCTCAGCACAGAGCCATGCTTCTGGGAAGCCATGTTTCAATCACTTCAAGGCATCAACTGTAAGTTCATTTCCAGTTGGATTATTCCAAGTTAGAGTTGGCTCGAATCTATTGCCAAAGAGGGCACCTTTACTTCCTTGTATAAAGTGTGAGAAGGATGATGAGTCCTCCAAAGAGGTCTCTATTGAGCGTCCACCCTACGATAGTTATATGGACTCGACATCTGGGCAGCTTGAACCCGCATCTGGTGCTCGTGCCAGCATTCCAGGGCAGGATTATTGGCCTGAAGGCACAGCTAGTCGAGTTAGGGCTGCCAGGGCTCCTGAGCCTACTGGTAAGTCAGTTGGATCACCATCTTATGGTAAAAATCCTGGAAGTAGGAGGAGGAAGAATAAAACATCAGTTGCTGCCGGTGAATCTACTGAGCAAAGTGTAGAGTCAAGTGATACAGTGGCAGTGGAACTGCTGGAACCAGAAACTTCAGAGGACGCACTAGAGGATCCTAAAGATACCCCATCTGAATATGTTGTGTATCAGACTGAACCTGAAAAAGAAGAAGAAACAGGATTTGACCTGGACAAGAAACTCGGACGTCCTCATCCCTTTATTGATCCAGAAACAAGGAAGCCATTAGGTGAGCCACTCACAAGTGATGAGCTATGGTGGAACTGGAGAAAACCAGAGAAAGAAAATTGGTCCAGATGGCAAAGGAGACGACCCGATTCTGAAACGGTTTTTCTCAAAGCAATGGCAGAGACTGGGCAGGTAAAGCTTTATGGTGAAAATCCAACATTGACTGAAACTTCACTTTACAGAGCAAGACGACATCTTTTCAAGGAAGAAAGGCTTCAAGCGGAACAAGAGAGACTGGATAGAACAGGTCCACTTGCATACTATTCGGAATGGGTAAAAGCATGGAAAAGGGACACTTCTCGAGAAGCTGTTCAGAAACATTATGAAGAGACTGGTGAAAATGAAACAACCCAACTAATTGAAATGTTTTCTCATCAAACAGATCGAGAGTATCGCATAATGATGGGGACAGATACCCGTATACGTAGGGACCCCTTAGCAATGCGTATGCGAGAGGATCAAATAAAGCAAATATGGGGCGGAGATCCTGTTTACCCAACTGTGAACTATATTCAAGATCCAGATGAAGTGATTGATTACAGAGGCGCAGATTTTCATGAACCGACACCAGATATGCTGTCTTTCCTGAAGGAGCACAAAAAAATCATATCAAGGGAGGAGCTTGAGAAAATTCTGTCAAAAGAGAAGACTCAAGAGCTTGAGGCACCTGATATAGAAGAAGCTATGGCACAAGCAGTTGACATCGGTGAAGATGATGAAGGAGAAGATAGTGAAACCGAGGTTGATGAACAAGGAGAGAAAATCACACGCAACTGGAGTGTCTTGAAAACTACTCCTGAGCTTACCAAGTCAAAGGATAAACCGAAAAAGAACGACGGCATGTCTTTGGAAGAAGCTGTAGACGATTCAGAGAACTTAACTGATTTTCTGATGGACTTTGAGGAAGACGTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

534

Amino Acids

60.86

Weight (kDa)

4.81

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 649
Acc36I ACCTGC 1 cut(s) 808
AccB1I GGYRCC 2 cut(s) 178, 1351
AccB7I CCANNNNNTGG 1 cut(s) 413
AccI GTMKAC 2 cut(s) 1108, 1548
AciI CCGC 3 cut(s) 294, 908, 1167
AclWI GGATC 7 cut(s) 409, 548, 561, 659, 1152, 1166, 1199
AcsI RAATTY 1 cut(s) 1317
AcuI CTGAAG 3 cut(s) 360, 519, 1295
AcyI GRCGYC 1 cut(s) 646
AfiI CCNNNNNNNGG 2 cut(s) 299, 413
AflIII ACRYGT 1 cut(s) 1596
AgsI TTSAA 8 cut(s) 94, 103, 290, 889, 905, 1049, 1202, 1474
AhdI GACNNNNNGTC 1 cut(s) 1528
AjiI CACGTC 1 cut(s) 1597
AjnI CCWGG 5 cut(s) 13, 319, 368, 424, 627
Alw21I GWGCWC 2 cut(s) 307, 1284
Alw26I GTCTC 6 cut(s) 61, 238, 760, 803, 913, 1010
AlwI GGATC 7 cut(s) 409, 548, 561, 659, 1152, 1166, 1199
AlwNI CAGNNNCTG 2 cut(s) 461, 812
Ama87I CYCGRG 1 cut(s) 987
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 3 cut(s) 283, 365, 461
ApoI RAATTY 1 cut(s) 1317
Asp700I GAANNNNTTC 2 cut(s) 900, 996
AspLEI GCGC 1 cut(s) 1235
AspS9I GGNCC 3 cut(s) 750, 935, 1117
AsuHPI GGTGA 6 cut(s) 396, 479, 701, 845, 1034, 1406
AvaI CYCGRG 1 cut(s) 987
AvaII GGWCC 3 cut(s) 750, 935, 1117
BaeGI GKGCMC 1 cut(s) 181
BamHI GGATCC 1 cut(s) 553
BanI GGYRCC 2 cut(s) 178, 1351
BanII GRGCYC 1 cut(s) 376
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 1340
Bbv12I GWGCWC 2 cut(s) 307, 1284
BbvI GCAGC 3 cut(s) 295, 352, 448
BccI CCATC 6 cut(s) 40, 415, 577, 750, 1084, 1573
BceAI ACGGC 1 cut(s) 1540
BcgI CGANNNNNNTGC 4 cut(s) 148, 182, 933, 967
BciT130I CCWGG 5 cut(s) 15, 321, 370, 426, 629
BcoDI GTCTC 6 cut(s) 61, 238, 760, 803, 913, 1010
BfaI CTAG 2 cut(s) 351, 548
BfmI CTRYAG 1 cut(s) 1545
BfuAI ACCTGC 1 cut(s) 808
BisI GCNGC 3 cut(s) 284, 366, 462
BlsI GCNGC 3 cut(s) 285, 367, 463
Bme1390I CCNGG 5 cut(s) 15, 321, 370, 426, 629
Bme18I GGWCC 3 cut(s) 750, 935, 1117
BmeRI GACNNNNNGTC 1 cut(s) 1528
BmeT110I CYCGRG 1 cut(s) 987
BmgBI CACGTC 1 cut(s) 1597
BmgT120I GGNCC 3 cut(s) 750, 935, 1117
BmiI GGNNCC 7 cut(s) 180, 375, 525, 555, 1118, 1119, 1353
BmrFI CCNGG 5 cut(s) 15, 321, 370, 426, 629
BmrI ACTGGG 1 cut(s) 822
BmsI GCATC 3 cut(s) 14, 116, 305
BmuI ACTGGG 1 cut(s) 822
BpiI GAAGAC 1 cut(s) 1340
BpmI CTGGAG 2 cut(s) 745, 1483
Bpu10I CCTNAGC 3 cut(s) 378, 1123, 1485
BpuEI CTTGAG 3 cut(s) 1323, 1331, 1367
BsaAI YACGTR 1 cut(s) 1112
BsaBI GATNNNNATC 1 cut(s) 406
BsaHI GRCGYC 1 cut(s) 646
BsaI GGTCTC 1 cut(s) 238
BsaJI CCNNGG 3 cut(s) 320, 369, 1425
BsaXI ACNNNNNCTCC 2 cut(s) 1161, 1191
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 413
Bse118I RCCGGY 1 cut(s) 464
Bse1I ACTGG 7 cut(s) 128, 391, 728, 817, 927, 1024, 1466
Bse3DI GCAATG 2 cut(s) 807, 1134
Bse8I GATNNNNATC 1 cut(s) 406
BseBI CCWGG 5 cut(s) 15, 321, 370, 426, 629
BseDI CCNNGG 3 cut(s) 320, 369, 1425
BseGI GGATG 2 cut(s) 217, 652
BseJI GATNNNNATC 1 cut(s) 406
BseLI CCNNNNNNNGG 2 cut(s) 299, 413
BseMI GCAATG 2 cut(s) 807, 1134
BseMII CTCAG 4 cut(s) 72, 369, 468, 1476
BseNI ACTGG 7 cut(s) 128, 391, 728, 817, 927, 1024, 1466
BseRI GAGGAG 2 cut(s) 451, 1319
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 3 cut(s) 295, 352, 448
BshFI GGCC 1 cut(s) 337
BshNI GGYRCC 2 cut(s) 178, 1351
BsiHKAI GWGCWC 2 cut(s) 307, 1284
BsiHKCI CYCGRG 1 cut(s) 987
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 3 cut(s) 992, 1108, 1130
BslI CCNNNNNNNGG 2 cut(s) 299, 413
BsmAI GTCTC 6 cut(s) 61, 238, 760, 803, 913, 1010
BsmBI CGTCTC 1 cut(s) 760
BsmFI GGGAC 3 cut(s) 992, 1108, 1130
BsmI GAATGC 1 cut(s) 315
BsnI GGCC 1 cut(s) 337
Bso31I GGTCTC 1 cut(s) 238
BsoBI CYCGRG 1 cut(s) 987
Bsp1286I GDGCHC 4 cut(s) 181, 307, 376, 1284
Bsp143I GATC 7 cut(s) 401, 553, 664, 1069, 1144, 1171, 1204
BspACI CCGC 3 cut(s) 294, 908, 1167
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 4 cut(s) 71, 370, 469, 1477
BspHI TCATGA 1 cut(s) 1243
BspLI GGNNCC 7 cut(s) 180, 375, 525, 555, 1118, 1119, 1353
BspMI ACCTGC 1 cut(s) 808
BspPI GGATC 7 cut(s) 409, 548, 561, 659, 1152, 1166, 1199
BspT107I GGYRCC 2 cut(s) 178, 1351
BspTNI GGTCTC 1 cut(s) 238
BsrDI GCAATG 2 cut(s) 807, 1134
BsrFI RCCGGY 1 cut(s) 464
BsrI ACTGG 7 cut(s) 128, 391, 728, 817, 927, 1024, 1466
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 3 cut(s) 320, 369, 1425
BssMI GATC 7 cut(s) 401, 553, 664, 1069, 1144, 1171, 1204
BssNAI GTATAC 1 cut(s) 1109
BssNI GRCGYC 1 cut(s) 646
BssSI CACGAG 1 cut(s) 306
Bst1107I GTATAC 1 cut(s) 1109
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 5 cut(s) 15, 321, 370, 426, 629
Bst4CI ACNGT 4 cut(s) 115, 505, 787, 1189
Bst6I CTCTTC 1 cut(s) 1008
BstACI GRCGYC 1 cut(s) 646
BstAPI GCANNNNNTGC 1 cut(s) 302
BstBAI YACGTR 1 cut(s) 1112
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 5 cut(s) 58, 378, 477, 1123, 1485
BstF5I GGATG 2 cut(s) 217, 652
BstHHI GCGC 1 cut(s) 1235
BstKTI GATC 7 cut(s) 404, 556, 667, 1072, 1147, 1174, 1207
BstMAI GTCTC 6 cut(s) 61, 238, 760, 803, 913, 1010
BstMBI GATC 7 cut(s) 401, 553, 664, 1069, 1144, 1171, 1204
BstMWI GCNNNNNNNGC 3 cut(s) 302, 371, 823
BstNI CCWGG 5 cut(s) 15, 321, 370, 426, 629
BstNSI RCATGY 1 cut(s) 1531
BstSCI CCNGG 5 cut(s) 13, 319, 368, 424, 627
BstSFI CTRYAG 1 cut(s) 1545
BstSLI GKGCMC 1 cut(s) 181
BstSNI TACGTA 1 cut(s) 1112
BstV1I GCAGC 3 cut(s) 295, 352, 448
BstV2I GAAGAC 1 cut(s) 1340
BstX2I RGATCY 3 cut(s) 553, 1171, 1204
BstXI CCANNNNNNTGG 2 cut(s) 21, 77
BstYI RGATCY 3 cut(s) 553, 1171, 1204
BstZ17I GTATAC 1 cut(s) 1109
BsuRI GGCC 1 cut(s) 337
BtrI CACGTC 1 cut(s) 1597
BtsCI GGATG 2 cut(s) 217, 652
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 2 cut(s) 510, 516
BveI ACCTGC 1 cut(s) 808
Cac8I GCNNGC 1 cut(s) 313
CaiI CAGNNNCTG 2 cut(s) 461, 812
CciI TCATGA 1 cut(s) 1243
CfoI GCGC 1 cut(s) 1235
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 3 cut(s) 750, 935, 1117
CseI GACGC 2 cut(s) 233, 551
CviAII CATG 5 cut(s) 71, 87, 969, 1244, 1528
DdeI CTNAG 5 cut(s) 58, 378, 477, 1123, 1485
DpnI GATC 7 cut(s) 403, 555, 666, 1071, 1146, 1173, 1206
DpnII GATC 7 cut(s) 401, 553, 664, 1069, 1144, 1171, 1204
DriI GACNNNNNGTC 1 cut(s) 1528
Eam1104I CTCTTC 1 cut(s) 1008
Eam1105I GACNNNNNGTC 1 cut(s) 1528
EarI CTCTTC 1 cut(s) 1008
EciI GGCGGA 1 cut(s) 1182
Eco105I TACGTA 1 cut(s) 1112
Eco24I GRGCYC 1 cut(s) 376
Eco31I GGTCTC 1 cut(s) 238
Eco47I GGWCC 3 cut(s) 750, 935, 1117
Eco57I CTGAAG 3 cut(s) 360, 519, 1295
Eco88I CYCGRG 1 cut(s) 987
EcoO109I RGGNCCY 1 cut(s) 1117
EcoRII CCWGG 5 cut(s) 13, 319, 368, 424, 627
EcoT38I GRGCYC 1 cut(s) 376
Esp3I CGTCTC 1 cut(s) 760
FaeI CATG 5 cut(s) 74, 90, 972, 1247, 1531
FalI AAGNNNNNCTT 4 cut(s) 885, 917, 967, 999
FaqI GGGAC 3 cut(s) 992, 1108, 1130
FatI CATG 5 cut(s) 70, 86, 968, 1243, 1527
FauI CCCGC 1 cut(s) 301
FblI GTMKAC 2 cut(s) 1108, 1548
Fnu4HI GCNGC 3 cut(s) 284, 366, 462
FokI GGATG 2 cut(s) 224, 639
FriOI GRGCYC 1 cut(s) 376
Fsp4HI GCNGC 3 cut(s) 284, 366, 462
FspBI CTAG 2 cut(s) 351, 548
GlaI GCGC 1 cut(s) 1234
GluI GCNGC 3 cut(s) 284, 366, 462
GsuI CTGGAG 2 cut(s) 745, 1483
HaeIII GGCC 1 cut(s) 337
HapII CCGG 1 cut(s) 465
HgaI GACGC 2 cut(s) 233, 551
HhaI GCGC 1 cut(s) 1235
Hin1I GRCGYC 1 cut(s) 646
Hin1II CATG 5 cut(s) 74, 90, 972, 1247, 1531
Hin6I GCGC 1 cut(s) 1233
HinP1I GCGC 1 cut(s) 1233
HincII GTYRAC 1 cut(s) 1387
HindII GTYRAC 1 cut(s) 1387
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 8 cut(s) 160, 218, 269, 470, 491, 776, 1336, 1553
HpaII CCGG 1 cut(s) 465
HphI GGTGA 6 cut(s) 396, 479, 701, 845, 1034, 1406
Hpy166II GTNNAC 7 cut(s) 248, 938, 1109, 1180, 1192, 1387, 1549
Hpy188I TCNGA 9 cut(s) 538, 574, 591, 644, 781, 955, 1002, 1558, 1578
Hpy8I GTNNAC 7 cut(s) 248, 938, 1109, 1180, 1192, 1387, 1549
Hpy99I CGWCG 1 cut(s) 1526
HpyAV CCTTC 4 cut(s) 202, 335, 1270, 1400
HpyCH4III ACNGT 4 cut(s) 115, 505, 787, 1189
HpyCH4IV ACGT 3 cut(s) 646, 1111, 1596
HpyCH4V TGCA 1 cut(s) 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 371, 823
HpyF3I CTNAG 5 cut(s) 58, 378, 477, 1123, 1485
HpySE526I ACGT 3 cut(s) 646, 1111, 1596
Hsp92I GRCGYC 1 cut(s) 646
Hsp92II CATG 5 cut(s) 74, 90, 972, 1247, 1531
HspAI GCGC 1 cut(s) 1233
KflI GGGWCCC 1 cut(s) 1117
Kzo9I GATC 7 cut(s) 401, 553, 664, 1069, 1144, 1171, 1204
LmnI GCTCC 3 cut(s) 379, 1279, 1306
Lsp1109I GCAGC 3 cut(s) 295, 352, 448
LweI GCATC 3 cut(s) 14, 116, 305
MaeI CTAG 2 cut(s) 351, 548
MaeII ACGT 3 cut(s) 646, 1111, 1596
MalI GATC 7 cut(s) 403, 555, 666, 1071, 1146, 1173, 1206
MboI GATC 7 cut(s) 401, 553, 664, 1069, 1144, 1171, 1204
MflI RGATCY 3 cut(s) 553, 1171, 1204
MhlI GDGCHC 4 cut(s) 181, 307, 376, 1284
MluCI AATT 3 cut(s) 745, 1044, 1317
MlyI GAGTC 4 cut(s) 227, 263, 500, 1330
MmeI TCCRAC 3 cut(s) 112, 379, 866
MroXI GAANNNNTTC 2 cut(s) 900, 996
MseI TTAA 1 cut(s) 1565
MslI CAYNNNNRTG 1 cut(s) 1088
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 5 cut(s) 15, 321, 370, 426, 629
Mva1269I GAATGC 1 cut(s) 315
MvaI CCWGG 5 cut(s) 15, 321, 370, 426, 629
MwoI GCNNNNNNNGC 3 cut(s) 302, 371, 823
NdeII GATC 7 cut(s) 401, 553, 664, 1069, 1144, 1171, 1204
NlaIII CATG 5 cut(s) 74, 90, 972, 1247, 1531
NlaIV GGNNCC 7 cut(s) 180, 375, 525, 555, 1118, 1119, 1353
NspI RCATGY 1 cut(s) 1531
PaeR7I CTCGAG 1 cut(s) 987
PagI TCATGA 1 cut(s) 1243
PctI GAATGC 1 cut(s) 315
PdmI GAANNNNTTC 2 cut(s) 900, 996
PfeI GAWTC 4 cut(s) 160, 470, 776, 1553
PflMI CCANNNNNTGG 1 cut(s) 413
PfoI TCCNGGA 1 cut(s) 424
PkrI GCNGC 3 cut(s) 285, 367, 463
PleI GAGTC 4 cut(s) 226, 263, 499, 1330
PpsI GAGTC 4 cut(s) 226, 263, 499, 1330
Ppu21I YACGTR 1 cut(s) 1112
PpuMI RGGWCCY 1 cut(s) 1117
Psp5II RGGWCCY 1 cut(s) 1117
Psp6I CCWGG 5 cut(s) 13, 319, 368, 424, 627
PspGI CCWGG 5 cut(s) 13, 319, 368, 424, 627
PspN4I GGNNCC 7 cut(s) 180, 375, 525, 555, 1118, 1119, 1353
PspPI GGNCC 3 cut(s) 750, 935, 1117
PspPPI RGGWCCY 1 cut(s) 1117
PstNI CAGNNNCTG 2 cut(s) 461, 812
PsuI RGATCY 3 cut(s) 553, 1171, 1204
RseI CAYNNNNRTG 1 cut(s) 1088
SaqAI TTAA 1 cut(s) 1565
SatI GCNGC 3 cut(s) 284, 366, 462
Sau3AI GATC 7 cut(s) 401, 553, 664, 1069, 1144, 1171, 1204
Sau96I GGNCC 3 cut(s) 750, 935, 1117
SchI GAGTC 4 cut(s) 227, 263, 500, 1330
ScrFI CCNGG 5 cut(s) 15, 321, 370, 426, 629
SduI GDGCHC 4 cut(s) 181, 307, 376, 1284
SfaNI GCATC 3 cut(s) 14, 116, 305
SfcI CTRYAG 1 cut(s) 1545
Sfr274I CTCGAG 1 cut(s) 987
SinI GGWCC 3 cut(s) 750, 935, 1117
SlaI CTCGAG 1 cut(s) 987
SmiMI CAYNNNNRTG 1 cut(s) 1088
SmlI CTYRAG 4 cut(s) 987, 1310, 1338, 1346
SmoI CTYRAG 4 cut(s) 987, 1310, 1338, 1346
SnaBI TACGTA 1 cut(s) 1112
Sse9I AATT 3 cut(s) 745, 1044, 1317
SsiI CCGC 3 cut(s) 294, 908, 1167
SspMI CTAG 2 cut(s) 351, 548
StyD4I CCNGG 5 cut(s) 13, 319, 368, 424, 627
TaaI ACNGT 4 cut(s) 115, 505, 787, 1189
TaiI ACGT 3 cut(s) 649, 1114, 1599
TaqI TCGA 5 cut(s) 158, 272, 355, 988, 1072
TasI AATT 3 cut(s) 745, 1044, 1317
TfiI GAWTC 4 cut(s) 160, 470, 776, 1553
Tru1I TTAA 1 cut(s) 1565
Tru9I TTAA 1 cut(s) 1565
TscAI CASTG 2 cut(s) 510, 516
TseI GCWGC 3 cut(s) 283, 365, 461
TspDTI ATGAA 8 cut(s) 111, 1026, 1044, 1227, 1232, 1260, 1419, 1449
TspRI CASTG 2 cut(s) 510, 516
Van91I CCANNNNNTGG 1 cut(s) 413
VpaK11BI GGWCC 3 cut(s) 750, 935, 1117
XapI RAATTY 1 cut(s) 1317
XceI RCATGY 1 cut(s) 1531
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 987
XmiI GTMKAC 2 cut(s) 1108, 1548
XmnI GAANNNNTTC 2 cut(s) 900, 996
XspI CTAG 2 cut(s) 351, 548
ZraI GACGTC 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.