pycom10g23350

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013800
Physical Location & Seq
Reverse (-)
25531694 .. 25532447
754 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 684 bp
ATGACAATCATTCTTTCTTCCATTTGCTTCCTTTTTTTACCCCTTGTCATTTCTCTATTTCTTGCCAAAAATACACAGGAATTCCTCCACAACCACCACCACAATAATATCATGTCTGCACCCCATCATGATCACAGTCATCGTAGAAAAGATTCCACTCCCATCGAGGGCTCCTCCTCCTCCTCATCACGATCCACTTCTCAGCAGCAGAAAGCACCTCAACCCCTCAGCCGATACGAGTCTCAGAAACGCCGCGACTGGAACACTTTCGGCCAGTACTTGAAGAACCAATCACCTCCAGTCTCACTCTCTCATTGCAACTACAACCACGTCCTCGATTTCCTCCGCTACTTGGATCAGTTCGGAAAGACTAAGGTTCACTTACACGGTTGCGTCTTCTTTGGGCAGCCTGACCCGCCTGCCCCGTGCACCTGCCCCCTCAGGCAGGCATGGGGCAGTCTGGACGCGCTGATCGGACGCCTCCGTGCTGCCTACGAGGAGCATGGAGGGTCTCCGGAGACAAACCCTTTTGGGAATGGAGCTATTCGGGTTTACTTACGTGACGTGAAGGAGTGTCAGGCTAAAGCAAGAGGGATTCCGTACAAGAAGAAGAAGAAGAAGAAGAGGAACGGTCAGCTTAAGGCAATTAACGATGAGGGTGCTCTGAAGCAGATCACTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF640

Protein Analysis

228

Amino Acids

25.71

Weight (kDa)

9.74

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALOG_dom PF04852 67 - 191 7e-66 ALOG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18610
fragaria_vesca FvH4_3g07770
malus_domestica MD05G1300800.v1.1 MD10G1279800.v1.1
prunus_persica Prupe.4G061700_v2.0.a1
pyrus_communis pycom05g27870 pycom10g23350
rosa_chinensis RchiOBHm_Chr5g0010811
rosa_laevigata RLG00000031783
rosa_multiflora Rmu_sc0000109.1_g000015
rosa_rugosa Rorug04G0452700
rosa_samantha Rh5AG085000 Rh5BG079700 Rh5CG092400 Rh5DG079900
rosa_wichuraiana Rw0G017960 Rw0G022240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 440
Acc36I ACCTGC 1 cut(s) 440
AccII CGCG 2 cut(s) 255, 467
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 3 cut(s) 253, 346, 416
AclWI GGATC 2 cut(s) 186, 363
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 478
AfaI GTAC 2 cut(s) 278, 602
AfiI CCNNNNNNNGG 3 cut(s) 167, 352, 445
AflII CTTAAG 1 cut(s) 638
AgsI TTSAA 1 cut(s) 283
AjiI CACGTC 2 cut(s) 331, 565
AluBI AGCT 2 cut(s) 542, 637
AluI AGCT 2 cut(s) 542, 637
Alw21I GWGCWC 2 cut(s) 431, 664
Alw26I GTCTC 4 cut(s) 246, 307, 512, 516
Alw44I GTGCAC 1 cut(s) 427
AlwI GGATC 2 cut(s) 186, 363
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 1 cut(s) 271
ApaLI GTGCAC 1 cut(s) 427
ApeKI GCWGC 3 cut(s) 205, 406, 488
ApoI RAATTY 1 cut(s) 80
Asp700I GAANNNNTTC 2 cut(s) 151, 266
AspLEI GCGC 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 285
AxyI CCTNAGG 1 cut(s) 440
BaeGI GKGCMC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 388
Bbv12I GWGCWC 2 cut(s) 431, 664
BbvCI CCTCAGC 1 cut(s) 227
BbvI GCAGC 3 cut(s) 217, 418, 475
BccI CCATC 2 cut(s) 132, 170
BcgI CGANNNNNNTGC 2 cut(s) 641, 675
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 4 cut(s) 246, 307, 512, 516
BfrI CTTAAG 1 cut(s) 638
BfuAI ACCTGC 1 cut(s) 440
BisI GCNGC 4 cut(s) 206, 253, 407, 489
BlsI GCNGC 4 cut(s) 207, 254, 408, 490
BmcAI AGTACT 1 cut(s) 278
BmgBI CACGTC 2 cut(s) 331, 565
BmiI GGNNCC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 388
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpmI CTGGAG 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 227
BsaAI YACGTR 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 478
BsaI GGTCTC 1 cut(s) 516
BsaWI WCCGGW 1 cut(s) 514
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 352, 445
Bse1I ACTGG 3 cut(s) 263, 274, 299
Bse21I CCTNAGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 313
BseAI TCCGGA 1 cut(s) 514
BseLI CCNNNNNNNGG 3 cut(s) 167, 352, 445
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 4 cut(s) 215, 241, 257, 454
BseNI ACTGG 3 cut(s) 263, 274, 299
BseRI GAGGAG 5 cut(s) 163, 166, 169, 172, 512
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 3 cut(s) 217, 418, 475
BsgI GTGCAG 1 cut(s) 102
Bsh1236I CGCG 2 cut(s) 255, 467
BshFI GGCC 1 cut(s) 273
BsiHKAI GWGCWC 2 cut(s) 431, 664
BsiSI CCGG 1 cut(s) 515
BslI CCNNNNNNNGG 3 cut(s) 167, 352, 445
BsmAI GTCTC 4 cut(s) 246, 307, 512, 516
BsnI GGCC 1 cut(s) 273
Bso31I GGTCTC 1 cut(s) 516
Bsp1286I GDGCHC 3 cut(s) 173, 431, 664
Bsp13I TCCGGA 1 cut(s) 514
Bsp143I GATC 5 cut(s) 130, 191, 355, 471, 672
BspACI CCGC 3 cut(s) 253, 346, 416
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 4 cut(s) 214, 240, 256, 453
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 2 cut(s) 255, 467
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 440
BspPI GGATC 2 cut(s) 186, 363
BspTI CTTAAG 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 313
BsrI ACTGG 3 cut(s) 263, 274, 299
BssMI GATC 5 cut(s) 130, 191, 355, 471, 672
BssNI GRCGYC 1 cut(s) 478
Bst4CI ACNGT 3 cut(s) 137, 389, 632
Bst6I CTCTTC 1 cut(s) 617
BstACI GRCGYC 1 cut(s) 478
BstAFI CTTAAG 1 cut(s) 638
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 420, 447
BstDEI CTNAG 5 cut(s) 201, 227, 243, 372, 440
BstENI CCTNNNNNAGG 1 cut(s) 443
BstFNI CGCG 2 cut(s) 255, 467
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 5 cut(s) 133, 194, 358, 474, 675
BstMAI GTCTC 4 cut(s) 246, 307, 512, 516
BstMBI GATC 5 cut(s) 130, 191, 355, 471, 672
BstMWI GCNNNNNNNGC 1 cut(s) 415
BstSLI GKGCMC 1 cut(s) 431
BstUI CGCG 2 cut(s) 255, 467
BstV1I GCAGC 3 cut(s) 217, 418, 475
BstV2I GAAGAC 1 cut(s) 388
Bsu36I CCTNAGG 1 cut(s) 440
BsuRI GGCC 1 cut(s) 273
BtrI CACGTC 2 cut(s) 331, 565
BveI ACCTGC 1 cut(s) 440
Cac8I GCNNGC 2 cut(s) 420, 447
CciI TCATGA 1 cut(s) 127
CfoI GCGC 1 cut(s) 469
CseI GACGC 3 cut(s) 382, 473, 486
Csp6I GTAC 2 cut(s) 277, 601
CviAII CATG 4 cut(s) 112, 128, 450, 503
CviJI RGCY 7 cut(s) 171, 231, 273, 409, 542, 581, 637
CviKI_1 RGCY 7 cut(s) 171, 231, 273, 409, 542, 581, 637
CviQI GTAC 2 cut(s) 277, 601
DdeI CTNAG 5 cut(s) 201, 227, 243, 372, 440
DpnI GATC 5 cut(s) 132, 193, 357, 473, 674
DpnII GATC 5 cut(s) 130, 191, 355, 471, 672
EaeI YGGCCR 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 617
EarI CTCTTC 1 cut(s) 617
Eco24I GRGCYC 1 cut(s) 173
Eco31I GGTCTC 1 cut(s) 516
Eco81I CCTNAGG 1 cut(s) 440
EcoNI CCTNNNNNAGG 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 173
FaeI CATG 4 cut(s) 115, 131, 453, 506
FaiI YATR 4 cut(s) 113, 129, 451, 504
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FatI CATG 4 cut(s) 111, 127, 449, 502
FauI CCCGC 1 cut(s) 423
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 4 cut(s) 206, 253, 407, 489
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 4 cut(s) 206, 253, 407, 489
GlaI GCGC 1 cut(s) 468
GluI GCNGC 4 cut(s) 206, 253, 407, 489
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 1 cut(s) 273
HapII CCGG 1 cut(s) 515
HgaI GACGC 3 cut(s) 382, 473, 486
HhaI GCGC 1 cut(s) 469
Hin1I GRCGYC 1 cut(s) 478
Hin1II CATG 4 cut(s) 115, 131, 453, 506
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HinfI GANTC 3 cut(s) 152, 239, 595
HpaII CCGG 1 cut(s) 515
HphI GGTGA 1 cut(s) 285
Hpy166II GTNNAC 3 cut(s) 379, 429, 553
Hpy188I TCNGA 4 cut(s) 246, 365, 476, 666
Hpy188III TCNNGA 4 cut(s) 128, 189, 461, 515
Hpy8I GTNNAC 3 cut(s) 379, 429, 553
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 3 cut(s) 137, 389, 632
HpyCH4IV ACGT 3 cut(s) 330, 559, 564
HpyCH4V TGCA 3 cut(s) 119, 318, 429
HpyF10VI GCNNNNNNNGC 1 cut(s) 415
HpyF3I CTNAG 5 cut(s) 201, 227, 243, 372, 440
HpySE526I ACGT 3 cut(s) 330, 559, 564
Hsp92I GRCGYC 1 cut(s) 478
Hsp92II CATG 4 cut(s) 115, 131, 453, 506
HspAI GCGC 1 cut(s) 467
Kpn2I TCCGGA 1 cut(s) 514
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 5 cut(s) 130, 191, 355, 471, 672
LmnI GCTCC 3 cut(s) 176, 499, 539
Lsp1109I GCAGC 3 cut(s) 217, 418, 475
MaeII ACGT 3 cut(s) 330, 559, 564
MaeIII GTNAC 1 cut(s) 560
MalI GATC 5 cut(s) 132, 193, 357, 473, 674
MboI GATC 5 cut(s) 130, 191, 355, 471, 672
MboII GAAGA 9 cut(s) 9, 295, 388, 619, 622, 625, 628, 631, 634
MhlI GDGCHC 3 cut(s) 173, 431, 664
MluCI AATT 2 cut(s) 80, 645
MlyI GAGTC 1 cut(s) 248
MroI TCCGGA 1 cut(s) 514
MroXI GAANNNNTTC 2 cut(s) 151, 266
MseI TTAA 3 cut(s) 639, 648, 682
MspCI CTTAAG 1 cut(s) 638
MspI CCGG 1 cut(s) 515
MvnI CGCG 2 cut(s) 255, 467
MwoI GCNNNNNNNGC 1 cut(s) 415
NdeII GATC 5 cut(s) 130, 191, 355, 471, 672
NlaIII CATG 4 cut(s) 115, 131, 453, 506
NlaIV GGNNCC 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 560
PagI TCATGA 1 cut(s) 127
PaqCI CACCTGC 1 cut(s) 440
PdmI GAANNNNTTC 2 cut(s) 151, 266
PfeI GAWTC 2 cut(s) 152, 595
PkrI GCNGC 4 cut(s) 207, 254, 408, 490
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Ppu21I YACGTR 1 cut(s) 560
PspN4I GGNNCC 1 cut(s) 172
RsaI GTAC 2 cut(s) 278, 602
RsaNI GTAC 2 cut(s) 277, 601
SaqAI TTAA 3 cut(s) 639, 648, 682
SatI GCNGC 4 cut(s) 206, 253, 407, 489
Sau3AI GATC 5 cut(s) 130, 191, 355, 471, 672
ScaI AGTACT 1 cut(s) 278
SchI GAGTC 1 cut(s) 248
SduI GDGCHC 3 cut(s) 173, 431, 664
SetI ASST 9 cut(s) 220, 298, 333, 378, 434, 544, 562, 567, 639
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
Sse9I AATT 2 cut(s) 80, 645
SsiI CCGC 3 cut(s) 253, 346, 416
TaaI ACNGT 3 cut(s) 137, 389, 632
TaiI ACGT 3 cut(s) 333, 562, 567
TaqI TCGA 2 cut(s) 165, 336
TasI AATT 2 cut(s) 80, 645
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 2 cut(s) 152, 595
Tru1I TTAA 3 cut(s) 639, 648, 682
Tru9I TTAA 3 cut(s) 639, 648, 682
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 3 cut(s) 205, 406, 488
Tsp45I GTSAC 1 cut(s) 560
TspGWI ACGGA 2 cut(s) 473, 588
Vha464I CTTAAG 1 cut(s) 638
VneI GTGCAC 1 cut(s) 427
XagI CCTNNNNNAGG 1 cut(s) 443
XapI RAATTY 1 cut(s) 80
XmnI GAANNNNTTC 2 cut(s) 151, 266
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.