Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012591

Physical Location & Seq

Genomic Coordinates Forward (+)

26104484 .. 26106885

Gene Structure 2402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGACTCCGAGTTCTGGACCTCCCGCCTCGCCGCCGCCAAACGCCAGTACACGCTGCAGCACCACCACCAGAGCTCCCACTTCGATCGGTTAAGCATCGATGATTTCGAGGTAGAAGACGAGGTCCGACCCGACTTCCCGTGCCCGTATTGCTACGAGGACTTCGACATCGCGTCCTTGTGCTCCCATCTCGAAGACGAGCACTCCTGCGAGTCTAAAACCACCGTTTGTCCCATTTGCTCTGTTAAAGTTGCGCGAGACATGTTAAGTCATATCACACTGGAGCATGGACACTTGTTCAAGATATCCTTTAACCTGGAATTTAGTAAATTGAGACATCGCAGATTGCGTAGAGTTGCTGTTCCTAATAGTCAGGCACTGTCTCTCCTTGGACGGGATCTTCGTGAGGCTCATCTCCAGGTGCTTCTAGGGAGCGGTGGATATCGATCAGAAAATGCCAACGTGTCTAATGCAGCAGCAACCGATCCATTCCTGTCATCACTTATTTTAAATTTCCCTGCATCAGGAGCAGATGAAATTTCAAAATCTGTGGTAACCACTAATGAGGACAGTTCCGCAAAGAATGCGGTGCGATCACATATTTGGAAATCAAGTTTTGATCCTTCCTTAAGTTATGAAGAGCGGGAGAAAAGGATTCGACAAGCTACTGGAAGGGCTGGTTTCATGCAAGATCTGTTTCTCTCAACACTGTTAGGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

241

Amino Acids

27.13

Weight (kDa)

5.94

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	45 - 97	1.3e-22	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	127 - 237	4.4e-28	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08710 FvH4_3g08710
malus_domestica	MD05G1310900.v1.1 MD10G1290000.v1.1
prunus_persica	Prupe.4G051700_v2.0.a1 Prupe.4G051700_v2.0.a1
pyrus_communis	pycom10g24230
rosa_chinensis	RchiOBHm_Chr5g0009071
rosa_laevigata	RLG00000031627
rosa_multiflora	Rmu_sc0002034.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066960 Rroxscaffold_1G00067630
rosa_rugosa	Rorug04G0440900
rosa_samantha	Rh5AG070000 Rh5BG066700 Rh5BG066900 Rh5CG078100 Rh5DG066200
rosa_wichuraiana	Rw5G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	435, 643
AccII	CGCG	2 cut(s)	173, 256
AciI	CCGC	7 cut(s)	25, 33, 36, 435, 576, 587, 643
AclWI	GGATC	3 cut(s)	405, 479, 614
AcsI	RAATTY	3 cut(s)	320, 511, 537
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	3 cut(s)	15, 394, 524
AflII	CTTAAG	1 cut(s)	628
AflIII	ACRYGT	2 cut(s)	261, 462
AgsI	TTSAA	2 cut(s)	301, 543
AhdI	GACNNNNNGTC	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	315, 417
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	75, 665
AluI	AGCT	2 cut(s)	75, 665
Alw21I	GWGCWC	3 cut(s)	77, 185, 204
Alw26I	GTCTC	3 cut(s)	252, 328, 387
AlwI	GGATC	3 cut(s)	405, 479, 614
AlwNI	CAGNNNCTG	1 cut(s)	379
ApeKI	GCWGC	4 cut(s)	55, 58, 473, 476
ApoI	RAATTY	3 cut(s)	320, 511, 537
ArsI	GACNNNNNNTTYG	2 cut(s)	384, 416
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	18, 124
AvaII	GGWCC	2 cut(s)	18, 124
BaeGI	GKGCMC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	123, 201
Bbv12I	GWGCWC	3 cut(s)	77, 185, 204
BbvI	GCAGC	4 cut(s)	42, 70, 485, 488
BccI	CCATC	1 cut(s)	195
BciT130I	CCWGG	2 cut(s)	317, 419
BcoDI	GTCTC	3 cut(s)	252, 328, 387
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	56
BfrI	CTTAAG	1 cut(s)	628
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	6 cut(s)	33, 36, 56, 59, 474, 477
BlsI	GCNGC	6 cut(s)	34, 37, 57, 60, 475, 478
Bme1390I	CCNGG	2 cut(s)	317, 419
Bme18I	GGWCC	2 cut(s)	18, 124
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	18, 124
BmrFI	CCNGG	2 cut(s)	317, 419
BmsI	GCATC	2 cut(s)	105, 530
BpiI	GAAGAC	2 cut(s)	123, 201
BpmI	CTGGAG	2 cut(s)	302, 401
Bsa29I	ATCGAT	2 cut(s)	99, 445
BsaBI	GATNNNNATC	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	388
BsaXI	ACNNNNNCTCC	6 cut(s)	59, 89, 188, 218, 369, 399
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 394, 524
Bse1I	ACTGG	3 cut(s)	46, 285, 673
Bse8I	GATNNNNATC	1 cut(s)	445
BseBI	CCWGG	2 cut(s)	317, 419
BseCI	ATCGAT	2 cut(s)	99, 445
BseDI	CCNNGG	1 cut(s)	388
BseJI	GATNNNNATC	1 cut(s)	445
BseLI	CCNNNNNNNGG	3 cut(s)	15, 394, 524
BseNI	ACTGG	3 cut(s)	46, 285, 673
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	4 cut(s)	42, 70, 485, 488
Bsh1236I	CGCG	2 cut(s)	173, 256
Bsh1285I	CGRYCG	1 cut(s)	88
BshVI	ATCGAT	2 cut(s)	99, 445
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	3 cut(s)	77, 185, 204
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	3 cut(s)	15, 394, 524
BsmAI	GTCTC	3 cut(s)	252, 328, 387
BsmFI	GGGAC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	589
Bsp1286I	GDGCHC	4 cut(s)	77, 146, 185, 204
Bsp143I	GATC	7 cut(s)	85, 397, 446, 484, 593, 619, 691
BspACI	CCGC	7 cut(s)	25, 33, 36, 435, 576, 587, 643
BspDI	ATCGAT	2 cut(s)	99, 445
BspFNI	CGCG	2 cut(s)	173, 256
BspMAI	CTGCAG	1 cut(s)	60
BspPI	GGATC	3 cut(s)	405, 479, 614
BspQI	GCTCTTC	1 cut(s)	633
BspTI	CTTAAG	1 cut(s)	628
BsrBI	CCGCTC	2 cut(s)	435, 643
BsrI	ACTGG	3 cut(s)	46, 285, 673
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	7 cut(s)	85, 397, 446, 484, 593, 619, 691
BssT1I	CCWWGG	1 cut(s)	388
Bst2UI	CCWGG	2 cut(s)	317, 419
Bst4CI	ACNGT	4 cut(s)	226, 381, 572, 711
Bst6I	CTCTTC	1 cut(s)	633
BstAFI	CTTAAG	1 cut(s)	628
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstEII	GGTNACC	1 cut(s)	553
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstFNI	CGCG	2 cut(s)	173, 256
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	7 cut(s)	88, 400, 449, 487, 596, 622, 694
BstMAI	GTCTC	3 cut(s)	252, 328, 387
BstMBI	GATC	7 cut(s)	85, 397, 446, 484, 593, 619, 691
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 527, 584
BstNI	CCWGG	2 cut(s)	317, 419
BstNSI	RCATGY	1 cut(s)	265
BstPI	GGTNACC	1 cut(s)	553
BstSCI	CCNGG	2 cut(s)	315, 417
BstSFI	CTRYAG	1 cut(s)	56
BstSLI	GKGCMC	1 cut(s)	146
BstUI	CGCG	2 cut(s)	173, 256
BstV1I	GCAGC	4 cut(s)	42, 70, 485, 488
BstV2I	GAAGAC	2 cut(s)	123, 201
BstX2I	RGATCY	2 cut(s)	397, 691
BstYI	RGATCY	2 cut(s)	397, 691
Bsu15I	ATCGAT	2 cut(s)	99, 445
BsuTUI	ATCGAT	2 cut(s)	99, 445
BtgZI	GCGATG	2 cut(s)	154, 323
BtsIMutI	CAGTG	3 cut(s)	278, 377, 707
CaiI	CAGNNNCTG	1 cut(s)	379
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	18, 124
ClaI	ATCGAT	2 cut(s)	99, 445
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	49
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	3 cut(s)	262, 287, 685
CviJI	RGCY	4 cut(s)	75, 410, 665, 677
CviKI_1	RGCY	4 cut(s)	75, 410, 665, 677
CviQI	GTAC	1 cut(s)	49
DpnI	GATC	7 cut(s)	87, 399, 448, 486, 595, 621, 693
DpnII	GATC	7 cut(s)	85, 397, 446, 484, 593, 619, 691
DraI	TTTAAA	1 cut(s)	510
DriI	GACNNNNNGTC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	633
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	77
Eco32I	GATATC	2 cut(s)	306, 443
Eco47I	GGWCC	2 cut(s)	18, 124
Eco53kI	GAGCTC	1 cut(s)	75
Eco91I	GGTNACC	1 cut(s)	553
EcoICRI	GAGCTC	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoO65I	GGTNACC	1 cut(s)	553
EcoRII	CCWGG	2 cut(s)	315, 417
EcoRV	GATATC	2 cut(s)	306, 443
EcoT14I	CCWWGG	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	3 cut(s)	265, 290, 688
FaiI	YATR	6 cut(s)	263, 273, 288, 600, 636, 686
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	3 cut(s)	261, 286, 684
FauI	CCCGC	2 cut(s)	32, 636
Fnu4HI	GCNGC	6 cut(s)	33, 36, 56, 59, 474, 477
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	6 cut(s)	33, 36, 56, 59, 474, 477
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	6 cut(s)	33, 36, 56, 59, 474, 477
GsuI	CTGGAG	2 cut(s)	302, 401
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	3 cut(s)	265, 290, 688
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	3 cut(s)	5, 212, 655
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	3 cut(s)	10, 128, 451
Hpy188III	TCNNGA	5 cut(s)	16, 191, 301, 404, 525
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	633, 666
HpyCH4III	ACNGT	4 cut(s)	226, 381, 572, 711
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	4 cut(s)	58, 473, 521, 688
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 527, 584
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	265, 290, 688
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	7 cut(s)	85, 397, 446, 484, 593, 619, 691
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	5 cut(s)	80, 188, 283, 432, 527
Lsp1109I	GCAGC	4 cut(s)	42, 70, 485, 488
LweI	GCATC	2 cut(s)	105, 530
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	553, 716
MalI	GATC	7 cut(s)	87, 399, 448, 486, 595, 621, 693
MbiI	CCGCTC	2 cut(s)	435, 643
MboI	GATC	7 cut(s)	85, 397, 446, 484, 593, 619, 691
MboII	GAAGA	4 cut(s)	128, 206, 392, 650
MflI	RGATCY	2 cut(s)	397, 691
MhlI	GDGCHC	4 cut(s)	77, 146, 185, 204
MluCI	AATT	4 cut(s)	320, 329, 511, 537
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	7 cut(s)	31, 38, 103, 115, 151, 400, 559
MseI	TTAA	6 cut(s)	92, 246, 266, 312, 509, 629
MspCI	CTTAAG	1 cut(s)	628
MspR9I	CCNGG	2 cut(s)	317, 419
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	2 cut(s)	317, 419
MvnI	CGCG	2 cut(s)	173, 256
MwoI	GCNNNNNNNGC	3 cut(s)	150, 527, 584
NdeII	GATC	7 cut(s)	85, 397, 446, 484, 593, 619, 691
NlaIII	CATG	3 cut(s)	265, 290, 688
NmuCI	GTSAC	1 cut(s)	716
NspI	RCATGY	1 cut(s)	265
PciI	ACATGT	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	633
PcsI	WCGNNNNNNNCGW	4 cut(s)	105, 162, 346, 400
PctI	GAATGC	1 cut(s)	589
PfeI	GAWTC	1 cut(s)	655
PflFI	GACNNNGTC	1 cut(s)	122
PkrI	GCNGC	6 cut(s)	34, 37, 57, 60, 475, 478
Ple19I	CGATCG	1 cut(s)	88
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PscI	ACATGT	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	315, 417
PspEI	GGTNACC	1 cut(s)	553
PspGI	CCWGG	2 cut(s)	315, 417
PspPI	GGNCC	2 cut(s)	18, 124
PstI	CTGCAG	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	2 cut(s)	397, 691
PsyI	GACNNNGTC	1 cut(s)	122
PvuI	CGATCG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	6 cut(s)	92, 246, 266, 312, 509, 629
SatI	GCNGC	6 cut(s)	33, 36, 56, 59, 474, 477
Sau3AI	GATC	7 cut(s)	85, 397, 446, 484, 593, 619, 691
Sau96I	GGNCC	2 cut(s)	18, 124
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	317, 419
SduI	GDGCHC	4 cut(s)	77, 146, 185, 204
SetI	ASST	9 cut(s)	23, 77, 114, 126, 318, 423, 465, 667, 718
SfaNI	GCATC	2 cut(s)	105, 530
SfcI	CTRYAG	1 cut(s)	56
SinI	GGWCC	2 cut(s)	18, 124
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	4 cut(s)	320, 329, 511, 537
SsiI	CCGC	7 cut(s)	25, 33, 36, 435, 576, 587, 643
SspMI	CTAG	1 cut(s)	428
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	315, 417
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	4 cut(s)	226, 381, 572, 711
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	7 cut(s)	84, 99, 108, 165, 192, 445, 658
TasI	AATT	4 cut(s)	320, 329, 511, 537
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	35, 38
TfiI	GAWTC	1 cut(s)	655
Tru1I	TTAA	6 cut(s)	92, 246, 266, 312, 509, 629
Tru9I	TTAA	6 cut(s)	92, 246, 266, 312, 509, 629
TscAI	CASTG	3 cut(s)	285, 384, 714
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	4 cut(s)	55, 58, 473, 476
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	3 cut(s)	549, 651, 673
TspRI	CASTG	3 cut(s)	285, 384, 714
Tth111I	GACNNNGTC	1 cut(s)	122
Vha464I	CTTAAG	1 cut(s)	628
VpaK11BI	GGWCC	2 cut(s)	18, 124
XagI	CCTNNNNNAGG	1 cut(s)	522
XapI	RAATTY	3 cut(s)	320, 511, 537
XceI	RCATGY	1 cut(s)	265
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.