Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010968

Physical Location & Seq

Genomic Coordinates Reverse (-)

26174779 .. 26175378

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAGCAGTTACAAAATTCAAACATTCAACCCACAGAAGTGCAGAAATTGTTAAAGCAATTAGCTGACGAGAAATTTTCTGAAGATGCAACTGGATCAGAGTCCGATGGTTTATCAGGAAAAACCAAGGATGATGACTCTATGCCCTGGAGGTTCGTAGAATGTATGCGGCCCCCAGTAAGGCAACCTACTGTCACACAAATGAATGATGGTATAGTTACTGTCTGTTTCGAAGGGGAGGTTTTGATATTGATCAAAGTCATAACCAGTGGCTTTCAACCGTATCACAGTCACCTAATGTCATATCGATGTCTTGTGCCCATAACCTCTCTGTTGGGTGGTGTCCAAGAATTGGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0008219 GO:0009626 GO:0009628 GO:0009651 GO:0009987 GO:0010337 GO:0010565 GO:0010817 GO:0012501 GO:0019222 GO:0031323 GO:0032350 GO:0033036 GO:0033037 GO:0033554 GO:0034050 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051716 GO:0052542 GO:0052545 GO:0062012 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MACPF

Protein Analysis

121

Amino Acids

13.41

Weight (kDa)

5.06

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28380
fragaria_vesca	FvH4_3g08740
malus_domestica	MD05G1311300.v1.1 MD10G1290300.v1.1
prunus_persica	Prupe.4G051500_v2.0.a1
pyrus_communis	pycom05g28740 pycom10g24250 pycom10g24280
rosa_chinensis	RchiOBHm_Chr5g0009001
rosa_laevigata	RLG00000031624
rosa_multiflora	Rmu_sc0021361.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067010 Rroxscaffold_1G00067650
rosa_rugosa	Rorug04G0440800 Rorug04G0440900
rosa_samantha	Rh5AG069800 Rh5BG066500 Rh5CG077800 Rh5DG065800
rosa_wichuraiana	Rw5G006510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	352
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	103
AcsI	RAATTY	2 cut(s)	16, 74
AcuI	CTGAAG	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	180, 352
AgsI	TTSAA	3 cut(s)	21, 29, 278
AjnI	CCWGG	1 cut(s)	146
AleI	CACNNNNGTG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AlwI	GGATC	1 cut(s)	103
AoxI	GGCC	1 cut(s)	170
ApoI	RAATTY	2 cut(s)	16, 74
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	284
AsuII	TTCGAA	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	321
BccI	CCATC	2 cut(s)	101, 203
BciT130I	CCWGG	1 cut(s)	148
BclI	TGATCA	1 cut(s)	252
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	169
Bpu14I	TTCGAA	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	126, 146
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 352
Bse1I	ACTGG	3 cut(s)	97, 176, 267
Bse8I	GATNNNNATC	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	148
BseCI	ATCGAT	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	126, 146
BseGI	GGATG	1 cut(s)	136
BseJI	GATNNNNATC	1 cut(s)	251
BseLI	CCNNNNNNNGG	2 cut(s)	180, 352
BseNI	ACTGG	3 cut(s)	97, 176, 267
BseSI	GKGCMC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	172
BshVI	ATCGAT	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	180, 352
BsnI	GGCC	1 cut(s)	172
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	95, 252
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	172
BspDI	ATCGAT	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	103
BspT104I	TTCGAA	1 cut(s)	231
BsrI	ACTGG	3 cut(s)	97, 176, 267
BssECI	CCNNGG	2 cut(s)	126, 146
BssMI	GATC	2 cut(s)	95, 252
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	4 cut(s)	193, 223, 282, 290
BstBI	TTCGAA	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	2 cut(s)	98, 255
BstMBI	GATC	2 cut(s)	95, 252
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstSLI	GKGCMC	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	172
BsuTUI	ATCGAT	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	171
ClaI	ATCGAT	1 cut(s)	307
CviJI	RGCY	3 cut(s)	65, 172, 273
CviKI_1	RGCY	3 cut(s)	65, 172, 273
DpnI	GATC	2 cut(s)	97, 254
DpnII	GATC	2 cut(s)	95, 252
Eco130I	CCWWGG	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaiI	YATR	6 cut(s)	143, 167, 215, 263, 304, 323
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	101, 137
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	3 cut(s)	82, 100, 106
Hpy188III	TCNNGA	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	4 cut(s)	193, 223, 282, 290
HpyCH4V	TGCA	2 cut(s)	43, 89
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	95, 252
LpnPI	CCDG	6 cut(s)	78, 102, 133, 160, 189, 280
LweI	GCATC	1 cut(s)	76
MaeIII	GTNAC	4 cut(s)	9, 193, 217, 290
MalI	GATC	2 cut(s)	97, 254
MboI	GATC	2 cut(s)	95, 252
MboII	GAAGA	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	5 cut(s)	16, 47, 59, 74, 350
MlyI	GAGTC	2 cut(s)	110, 131
MnlI	CCTC	3 cut(s)	144, 232, 337
MseI	TTAA	1 cut(s)	53
MslI	CAYNNNNRTG	3 cut(s)	38, 200, 307
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
NdeII	GATC	2 cut(s)	95, 252
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	2 cut(s)	193, 290
NspV	TTCGAA	1 cut(s)	231
OliI	CACNNNNGTG	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	171
PleI	GAGTC	2 cut(s)	109, 131
PpsI	GAGTC	2 cut(s)	109, 131
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	171
RseI	CAYNNNNRTG	3 cut(s)	38, 200, 307
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	2 cut(s)	95, 252
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	2 cut(s)	110, 131
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	6 cut(s)	67, 155, 190, 243, 297, 329
SfaNI	GCATC	1 cut(s)	76
SfuI	TTCGAA	1 cut(s)	231
SmiMI	CAYNNNNRTG	3 cut(s)	38, 200, 307
Sse9I	AATT	5 cut(s)	16, 47, 59, 74, 350
SsiI	CCGC	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	4 cut(s)	193, 223, 282, 290
TaqI	TCGA	2 cut(s)	231, 307
TasI	AATT	5 cut(s)	16, 47, 59, 74, 350
TauI	GCSGC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	2 cut(s)	193, 290
Tsp45I	GTSAC	2 cut(s)	193, 290
TspDTI	ATGAA	2 cut(s)	17, 218
TspRI	CASTG	1 cut(s)	274
Van91I	CCANNNNNTGG	1 cut(s)	352
XapI	RAATTY	2 cut(s)	16, 74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.