Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003786

Physical Location & Seq

Genomic Coordinates Reverse (-)

59751327 .. 59753733

Gene Structure 2407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0440800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGTAGTGGTGGTAGTGATGATCATGTTTCTTCTAGCTTTGTTAAGGTACTGTTGGGGACGGTTGCAGTGGTGGGCTTTATCTTGGTTTTGTTGGTTGCTACGCTAGACTTGACTACTACTGATCAAGGTCAAGGAGAAGGCATAGGGTCGACAAAAACTGCAGCTACGACCTCATCAGCAACATCAGATCAGTTTGCAGGAAATAGTATGAAGCATGCAGATCAGGAACTTGTTCATCCGGAGCTGGATCTCAACTATATGAGCAAAAGAAGAGTTCCTAATGGGCCAGATCCTATTCACAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

103

Amino Acids

10.7

Weight (kDa)

5.03

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15210
fragaria_vesca	FvH4_3g08750 FvH4_3g19450
malus_domestica	MD03G1231800.v1.1 MD05G1311400.v1.1 MD10G1290400.v1.1 MD10G1290600.v1.1 MD11G1252800.v1.1
prunus_persica	Prupe.4G051400_v2.0.a1 Prupe.4G176200_v2.0.a1
pyrus_communis	pycom03g17920 pycom10g24260 pycom10g24300 pycom11g22430
rosa_chinensis	RchiOBHm_Chr5g0008991 RchiOBHm_Chr5g0032721
rosa_laevigata	RLG00000031623 RLG00000033420
rosa_multiflora	Rmu_co8352207.1_g000001 Rmu_sc0002034.1_g000015 Rmu_sc0002292.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047380 Rroxscaffold_1G00047840
rosa_rugosa	Rorug04G0440800 Rorug05G0133300
rosa_samantha	Rh5AG069700 Rh5BG066400 Rh5BG227000 Rh5CG077600 Rh5CG254800 Rh5DG065600 Rh5DG231700
rosa_wichuraiana	Rw5G006500 Rw5G020710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	152
AccIII	TCCGGA	1 cut(s)	241
AclWI	GGATC	2 cut(s)	258, 287
AfaI	GTAC	1 cut(s)	51
AluBI	AGCT	3 cut(s)	39, 167, 247
AluI	AGCT	3 cut(s)	39, 167, 247
AlwI	GGATC	2 cut(s)	258, 287
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	176
BclI	TGATCA	2 cut(s)	22, 124
BfaI	CTAG	2 cut(s)	36, 107
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	287
BsaWI	WCCGGW	1 cut(s)	241
BseAI	TCCGGA	1 cut(s)	241
BseGI	GGATG	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	176
BshFI	GGCC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	289
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
BspANI	GGCC	1 cut(s)	289
BspEI	TCCGGA	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	2 cut(s)	258, 287
BssMI	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
Bst4CI	ACNGT	3 cut(s)	54, 64, 308
Bst6I	CTCTTC	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	6 cut(s)	25, 127, 193, 226, 253, 295
BstMBI	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
BstNSI	RCATGY	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	176
BstX2I	RGATCY	2 cut(s)	250, 292
BstYI	RGATCY	2 cut(s)	250, 292
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	2 cut(s)	26, 218
CviJI	RGCY	5 cut(s)	39, 78, 167, 247, 289
CviKI_1	RGCY	5 cut(s)	39, 78, 167, 247, 289
CviQI	GTAC	1 cut(s)	50
DpnI	GATC	6 cut(s)	24, 126, 192, 225, 252, 294
DpnII	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
FaeI	CATG	2 cut(s)	29, 221
FaiI	YATR	6 cut(s)	27, 146, 212, 219, 261, 263
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	2 cut(s)	25, 217
FbaI	TGATCA	2 cut(s)	22, 124
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	36, 107
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	2 cut(s)	29, 221
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	227, 242
Hpy8I	GTNNAC	1 cut(s)	153
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	3 cut(s)	54, 64, 308
HpyCH4V	TGCA	4 cut(s)	68, 164, 200, 221
Hsp92II	CATG	2 cut(s)	29, 221
Kpn2I	TCCGGA	1 cut(s)	241
Ksp22I	TGATCA	2 cut(s)	22, 124
Kzo9I	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	5 cut(s)	186, 212, 233, 255, 303
Lsp1109I	GCAGC	1 cut(s)	176
MaeI	CTAG	2 cut(s)	36, 107
MalI	GATC	6 cut(s)	24, 126, 192, 225, 252, 294
MboI	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
MboII	GAAGA	2 cut(s)	24, 285
MflI	RGATCY	2 cut(s)	250, 292
MnlI	CCTC	1 cut(s)	184
MroI	TCCGGA	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	1 cut(s)	45
MspI	CCGG	1 cut(s)	242
NdeII	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
NlaIII	CATG	2 cut(s)	29, 221
NspI	RCATGY	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	250, 292
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
Sau96I	GGNCC	1 cut(s)	287
SetI	ASST	6 cut(s)	41, 51, 133, 169, 176, 249
SfcI	CTRYAG	1 cut(s)	162
SphI	GCATGC	1 cut(s)	221
SspMI	CTAG	2 cut(s)	36, 107
TaaI	ACNGT	3 cut(s)	54, 64, 308
TaqI	TCGA	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	227, 227
TspRI	CASTG	1 cut(s)	75
XceI	RCATGY	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	2 cut(s)	36, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.