Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002292.1

Orthogroup ID

OG0003786

Physical Location & Seq

Genomic Coordinates Reverse (-)

3006 .. 3758

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002292.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggctccgaaaacggcagcaaaatccggctccgggacccagaacccgaagccgaactcgctcgagatccgttatcggggcgtcaggaagaggccttggggtcgctacgctgccgagatcagggatcctggcaagaagacgagggtctggctcggcacgttcgatacggctgaggaggcggcgcgtgcgtacgacaaggcggcgcgggagtaccgtggagctaaggctaagaccaacttcccaacgccggccgagcttcacgcgaacacaatcaaccgcggcaacaataacagcggcggcagacagaaccatcatttcccgcccgcggctcaggcgcgcagccccagccagaccagcaccgtggactcctcgtccccgccggcgcaggcgcctccggccctggacctcaccctctcagcgccccgtttcgccgcggcggccaacgcgggctacttcaccgccgcgagtgcctaccacgcgctccctctcgggcgacccatctttttcttcgacgcgttcgccagggccgacaacgtggtgacgacaacgacgggtctccatcgccccctcgccgcccgcgaaatgggcaaacctgacaaaagcgtcaaggcggccgcctcaccgtccggcggttcccactccggcctcagcgactcggactcctccaccgtcgtggatttcgctcactcccccgccaagaaaggaccgctcgatctcgacctcaacctcccccctccagcggagaaagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010104 GO:0010105 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016604 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070297 GO:0070298 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

250

Amino Acids

26.43

Weight (kDa)

10.03

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15210
fragaria_vesca	FvH4_3g08750 FvH4_3g19450
malus_domestica	MD03G1231800.v1.1 MD05G1311400.v1.1 MD10G1290400.v1.1 MD10G1290600.v1.1 MD11G1252800.v1.1
prunus_persica	Prupe.4G051400_v2.0.a1 Prupe.4G176200_v2.0.a1
pyrus_communis	pycom03g17920 pycom10g24260 pycom10g24300 pycom11g22430
rosa_chinensis	RchiOBHm_Chr5g0008991 RchiOBHm_Chr5g0032721
rosa_laevigata	RLG00000031623 RLG00000033420
rosa_multiflora	Rmu_co8352207.1_g000001 Rmu_sc0002034.1_g000015 Rmu_sc0002292.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047380 Rroxscaffold_1G00047840
rosa_rugosa	Rorug04G0440800 Rorug05G0133300
rosa_samantha	Rh5AG069700 Rh5BG066400 Rh5BG227000 Rh5CG077600 Rh5CG254800 Rh5DG065600 Rh5DG231700
rosa_wichuraiana	Rw5G006500 Rw5G020710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	388
AccBSI	CCGCTC	1 cut(s)	709
AclWI	GGATC	3 cut(s)	61, 119, 132
AcoI	YGGCCR	3 cut(s)	249, 438, 612
AcyI	GRCGYC	2 cut(s)	81, 389
AfaI	GTAC	2 cut(s)	191, 212
AfiI	CCNNNNNNNGG	8 cut(s)	33, 76, 120, 247, 325, 583, 629, 739
AflIII	ACRYGT	1 cut(s)	513
AhdI	GACNNNNNGTC	1 cut(s)	370
AjnI	CCWGG	3 cut(s)	127, 399, 521
AleI	CACNNNNGTG	1 cut(s)	671
AluBI	AGCT	2 cut(s)	221, 256
AluI	AGCT	2 cut(s)	221, 256
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	3 cut(s)	61, 119, 132
Ama87I	CYCGRG	2 cut(s)	62, 488
AoxI	GGCC	7 cut(s)	92, 249, 396, 438, 525, 612, 643
ApeKI	GCWGC	3 cut(s)	17, 110, 339
AspLEI	GCGC	8 cut(s)	184, 205, 337, 339, 385, 391, 421, 481
AspS9I	GGNCC	5 cut(s)	36, 397, 403, 525, 704
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	4 cut(s)	400, 448, 550, 612
AvaI	CYCGRG	2 cut(s)	62, 488
AvaII	GGWCC	3 cut(s)	36, 403, 704
BamHI	GGATCC	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	143
BbvCI	CCTCAGC	2 cut(s)	171, 647
BbvI	GCAGC	3 cut(s)	29, 97, 351
BccI	CCATC	3 cut(s)	318, 506, 567
BceAI	ACGGC	2 cut(s)	30, 183
BciT130I	CCWGG	3 cut(s)	129, 401, 523
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	560
BfoI	RGCGCY	2 cut(s)	392, 422
BglI	GCCNNNNNGGC	1 cut(s)	437
Bme1390I	CCNGG	4 cut(s)	34, 129, 401, 523
Bme18I	GGWCC	3 cut(s)	36, 403, 704
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmeT110I	CYCGRG	2 cut(s)	62, 488
BmgT120I	GGNCC	5 cut(s)	36, 397, 403, 525, 704
BmiI	GGNNCC	7 cut(s)	6, 31, 37, 38, 126, 390, 634
BmrFI	CCNGG	4 cut(s)	34, 129, 401, 523
BoxI	GACNNNNGTC	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	720
Bpu10I	CCTNAGC	4 cut(s)	171, 222, 330, 647
BpuMI	CCSGG	1 cut(s)	34
BsaHI	GRCGYC	2 cut(s)	81, 389
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	8 cut(s)	95, 214, 277, 324, 360, 399, 432, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	644, 674
Bsc4I	CCNNNNNNNGG	8 cut(s)	33, 76, 120, 247, 325, 583, 629, 739
Bse118I	RCCGGY	2 cut(s)	247, 379
BseBI	CCWGG	3 cut(s)	129, 401, 523
BseDI	CCNNGG	8 cut(s)	95, 214, 277, 324, 360, 399, 432, 522
BseLI	CCNNNNNNNGG	8 cut(s)	33, 76, 120, 247, 325, 583, 629, 739
BseMII	CTCAG	4 cut(s)	162, 344, 429, 661
BsePI	GCGCGC	1 cut(s)	335
BseRI	GAGGAG	3 cut(s)	188, 358, 652
BseX3I	CGGCCG	2 cut(s)	249, 612
BseXI	GCAGC	3 cut(s)	29, 97, 351
BseYI	CCCAGC	1 cut(s)	344
Bsh1285I	CGRYCG	2 cut(s)	252, 615
BshFI	GGCC	7 cut(s)	94, 251, 398, 440, 527, 614, 645
BshNI	GGYRCC	1 cut(s)	388
BsiEI	CGRYCG	2 cut(s)	252, 615
BsiHKCI	CYCGRG	2 cut(s)	62, 488
BsiSI	CCGG	7 cut(s)	27, 33, 248, 380, 395, 627, 642
BsiWI	CGTACG	1 cut(s)	189
BslFI	GGGAC	2 cut(s)	49, 358
BslI	CCNNNNNNNGG	8 cut(s)	33, 76, 120, 247, 325, 583, 629, 739
BsmAI	GTCTC	1 cut(s)	560
BsmFI	GGGAC	2 cut(s)	49, 358
BsnI	GGCC	7 cut(s)	94, 251, 398, 440, 527, 614, 645
Bso31I	GGTCTC	1 cut(s)	560
BsoBI	CYCGRG	2 cut(s)	62, 488
Bsp143I	GATC	4 cut(s)	66, 117, 124, 712
BspANI	GGCC	7 cut(s)	94, 251, 398, 440, 527, 614, 645
BspCNI	CTCAG	4 cut(s)	163, 343, 428, 660
BspLI	GGNNCC	7 cut(s)	6, 31, 37, 38, 126, 390, 634
BspPI	GGATC	3 cut(s)	61, 119, 132
BspT107I	GGYRCC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	560
BsrBI	CCGCTC	1 cut(s)	709
BsrFI	RCCGGY	2 cut(s)	247, 379
BssAI	RCCGGY	2 cut(s)	247, 379
BssECI	CCNNGG	8 cut(s)	95, 214, 277, 324, 360, 399, 432, 522
BssHII	GCGCGC	1 cut(s)	335
BssMI	GATC	4 cut(s)	66, 117, 124, 712
BssNI	GRCGYC	2 cut(s)	81, 389
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	3 cut(s)	129, 401, 523
Bst4CI	ACNGT	4 cut(s)	215, 361, 624, 670
Bst6I	CTCTTC	1 cut(s)	83
BstACI	GRCGYC	2 cut(s)	81, 389
BstC8I	GCNNGC	8 cut(s)	186, 249, 324, 337, 381, 387, 448, 577
BstDEI	CTNAG	6 cut(s)	171, 222, 228, 330, 415, 647
BstDSI	CCRYGG	5 cut(s)	214, 277, 324, 360, 432
BstH2I	RGCGCY	2 cut(s)	392, 422
BstHHI	GCGC	8 cut(s)	184, 205, 337, 339, 385, 391, 421, 481
BstKTI	GATC	4 cut(s)	69, 120, 127, 715
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	4 cut(s)	66, 117, 124, 712
BstMCI	CGRYCG	2 cut(s)	252, 615
BstNI	CCWGG	3 cut(s)	129, 401, 523
BstPAI	GACNNNNGTC	1 cut(s)	143
BstSCI	CCNGG	4 cut(s)	32, 127, 399, 521
BstV1I	GCAGC	3 cut(s)	29, 97, 351
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	66, 124
BstXI	CCANNNNNNTGG	2 cut(s)	361, 673
BstYI	RGATCY	2 cut(s)	66, 124
BstZI	CGGCCG	2 cut(s)	249, 612
BsuRI	GGCC	7 cut(s)	94, 251, 398, 440, 527, 614, 645
BtgI	CCRYGG	5 cut(s)	214, 277, 324, 360, 432
BtgZI	GCGATG	1 cut(s)	545
Cac8I	GCNNGC	8 cut(s)	186, 249, 324, 337, 381, 387, 448, 577
CciNI	GCGGCCGC	1 cut(s)	612
CfoI	GCGC	8 cut(s)	184, 205, 337, 339, 385, 391, 421, 481
Cfr10I	RCCGGY	2 cut(s)	247, 379
Cfr13I	GGNCC	5 cut(s)	36, 397, 403, 525, 704
Cfr42I	CCGCGG	3 cut(s)	280, 327, 435
CseI	GACGC	3 cut(s)	70, 521, 592
Csp6I	GTAC	2 cut(s)	190, 211
CviQI	GTAC	2 cut(s)	190, 211
DdeI	CTNAG	6 cut(s)	171, 222, 228, 330, 415, 647
DinI	GGCGCC	1 cut(s)	390
DpnI	GATC	4 cut(s)	68, 119, 126, 714
DpnII	GATC	4 cut(s)	66, 117, 124, 712
DrdI	GACNNNNNNGTC	1 cut(s)	602
DriI	GACNNNNNGTC	1 cut(s)	370
DseDI	GACNNNNNNGTC	1 cut(s)	602
EaeI	YGGCCR	3 cut(s)	249, 438, 612
EagI	CGGCCG	2 cut(s)	249, 612
Eam1104I	CTCTTC	1 cut(s)	83
Eam1105I	GACNNNNNGTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	83
EclXI	CGGCCG	2 cut(s)	249, 612
Eco130I	CCWWGG	1 cut(s)	95
Eco147I	AGGCCT	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	560
Eco47I	GGWCC	3 cut(s)	36, 403, 704
Eco52I	CGGCCG	2 cut(s)	249, 612
Eco88I	CYCGRG	2 cut(s)	62, 488
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	3 cut(s)	127, 399, 521
EcoT14I	CCWWGG	1 cut(s)	95
EgeI	GGCGCC	1 cut(s)	390
EheI	GGCGCC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	95
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	2 cut(s)	49, 358
FauI	CCCGC	7 cut(s)	198, 327, 331, 384, 439, 584, 700
GlaI	GCGC	8 cut(s)	183, 204, 336, 338, 384, 390, 420, 480
GsaI	CCCAGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	720
HaeII	RGCGCY	2 cut(s)	392, 422
HaeIII	GGCC	7 cut(s)	94, 251, 398, 440, 527, 614, 645
HapII	CCGG	7 cut(s)	27, 33, 248, 380, 395, 627, 642
HgaI	GACGC	3 cut(s)	70, 521, 592
HhaI	GCGC	8 cut(s)	184, 205, 337, 339, 385, 391, 421, 481
Hin1I	GRCGYC	2 cut(s)	81, 389
Hin6I	GCGC	8 cut(s)	182, 203, 335, 337, 383, 389, 419, 479
HinP1I	GCGC	8 cut(s)	182, 203, 335, 337, 383, 389, 419, 479
HinfI	GANTC	3 cut(s)	365, 653, 659
HpaII	CCGG	7 cut(s)	27, 33, 248, 380, 395, 627, 642
HphI	GGTGA	4 cut(s)	400, 448, 550, 612
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	2 cut(s)	9, 658
Hpy188III	TCNNGA	3 cut(s)	64, 85, 716
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	3 cut(s)	515, 553, 674
HpyCH4III	ACNGT	4 cut(s)	215, 361, 624, 670
HpyCH4IV	ACGT	2 cut(s)	158, 534
HpyF3I	CTNAG	6 cut(s)	171, 222, 228, 330, 415, 647
HpySE526I	ACGT	2 cut(s)	158, 534
Hsp92I	GRCGYC	2 cut(s)	81, 389
HspAI	GCGC	8 cut(s)	182, 203, 335, 337, 383, 389, 419, 479
KasI	GGCGCC	1 cut(s)	388
KflI	GGGWCCC	1 cut(s)	36
KroI	GCCGGC	2 cut(s)	247, 379
KroNI	GCCGGC	2 cut(s)	249, 381
KspI	CCGCGG	3 cut(s)	280, 327, 435
Kzo9I	GATC	4 cut(s)	66, 117, 124, 712
LmnI	GCTCC	4 cut(s)	10, 35, 218, 486
Lsp1109I	GCAGC	3 cut(s)	29, 97, 351
MaeII	ACGT	2 cut(s)	158, 534
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	4 cut(s)	68, 119, 126, 714
MbiI	CCGCTC	1 cut(s)	709
MboI	GATC	4 cut(s)	66, 117, 124, 712
MboII	GAAGA	3 cut(s)	100, 148, 499
MflI	RGATCY	2 cut(s)	66, 124
MluI	ACGCGT	1 cut(s)	513
Mly113I	GGCGCC	1 cut(s)	389
MlyI	GAGTC	3 cut(s)	359, 647, 653
MreI	CGCCGGCG	1 cut(s)	379
MroNI	GCCGGC	2 cut(s)	247, 379
MslI	CAYNNNNRTG	1 cut(s)	671
MspA1I	CMGCKG	5 cut(s)	279, 294, 326, 434, 740
MspI	CCGG	7 cut(s)	27, 33, 248, 380, 395, 627, 642
MspR9I	CCNGG	4 cut(s)	34, 129, 401, 523
MvaI	CCWGG	3 cut(s)	129, 401, 523
NaeI	GCCGGC	2 cut(s)	249, 381
NarI	GGCGCC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	4 cut(s)	66, 117, 124, 712
NgoMIV	GCCGGC	2 cut(s)	247, 379
NlaIV	GGNNCC	7 cut(s)	6, 31, 37, 38, 126, 390, 634
NmeAIII	GCCGAG	3 cut(s)	132, 139, 277
NmuCI	GTSAC	1 cut(s)	538
NotI	GCGGCCGC	1 cut(s)	612
OliI	CACNNNNGTG	1 cut(s)	671
PaeR7I	CTCGAG	1 cut(s)	62
PauI	GCGCGC	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	3 cut(s)	159, 525, 576
PdiI	GCCGGC	2 cut(s)	249, 381
Pfl23II	CGTACG	1 cut(s)	189
PfoI	TCCNGGA	1 cut(s)	32
PleI	GAGTC	3 cut(s)	359, 647, 653
PluTI	GGCGCC	1 cut(s)	392
PpsI	GAGTC	3 cut(s)	359, 647, 653
PpuMI	RGGWCCY	1 cut(s)	36
PshAI	GACNNNNGTC	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	3 cut(s)	127, 399, 521
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	3 cut(s)	127, 399, 521
PspLI	CGTACG	1 cut(s)	189
PspN4I	GGNNCC	7 cut(s)	6, 31, 37, 38, 126, 390, 634
PspPI	GGNCC	5 cut(s)	36, 397, 403, 525, 704
PspPPI	RGGWCCY	1 cut(s)	36
PsuI	RGATCY	2 cut(s)	66, 124
PteI	GCGCGC	1 cut(s)	335
RsaI	GTAC	2 cut(s)	191, 212
RsaNI	GTAC	2 cut(s)	190, 211
RseI	CAYNNNNRTG	1 cut(s)	671
SacII	CCGCGG	3 cut(s)	280, 327, 435
Sau3AI	GATC	4 cut(s)	66, 117, 124, 712
Sau96I	GGNCC	5 cut(s)	36, 397, 403, 525, 704
SchI	GAGTC	3 cut(s)	359, 647, 653
ScrFI	CCNGG	4 cut(s)	34, 129, 401, 523
SetI	ASST	8 cut(s)	161, 223, 258, 408, 537, 595, 723, 729
SfoI	GGCGCC	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	62
Sfr303I	CCGCGG	3 cut(s)	280, 327, 435
SgrAI	CRCCGGYG	1 cut(s)	379
SgrBI	CCGCGG	3 cut(s)	280, 327, 435
SinI	GGWCC	3 cut(s)	36, 403, 704
SlaI	CTCGAG	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
SseBI	AGGCCT	1 cut(s)	94
SspDI	GGCGCC	1 cut(s)	388
StuI	AGGCCT	1 cut(s)	94
StyD4I	CCNGG	4 cut(s)	32, 127, 399, 521
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	4 cut(s)	215, 361, 624, 670
TaiI	ACGT	2 cut(s)	161, 537
TaqI	TCGA	5 cut(s)	63, 162, 510, 711, 717
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	3 cut(s)	17, 110, 339
Tsp45I	GTSAC	1 cut(s)	538
TspGWI	ACGGA	1 cut(s)	59
VpaK11BI	GGWCC	3 cut(s)	36, 403, 704
XhoI	CTCGAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.