Rroxscaffold_1G00047840

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003786
Physical Location & Seq
Reverse (-)
67683919 .. 67684671
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047840.1

Sequence Viewer

Length: 753 bp
ATGGCTCCGAAAACGGCAGCAAAATCCGGCTCCGGGACCCAGAACCCGAAGCCGAACTCGCTCGAGATCCGTTATCGGGGCGTCAGGAAGAGGCCTTGGGGTCGCTACGCTGCCGAGATCAGGGATCCTGGCAAGAAGACGAGGGTCTGGCTCGGCACGTTCGATACGGCTGAGGAGGCGGCGCGTGCGTACGACAAGGCGGCGCGGGAGTACCGTGGAGCTAAGGCTAAGACCAACTTCCCGACGCCGGCCGAGCTTCACGCGAACAGCAACAACCGGGGCAACAATAGCAGCGGCGGCAGACAGAACCATCATTCCCCGCCTGCGGCCCAGGCGCGCAGCCCTAGCCAGACCAGCACCGTGGACTCCTCGTCCCCACCGGCGCCGGCGCCTCCGGCCCTGGACCTCACCCTCGCAGCGCCCCGTTTCGCGGCGGCGGCCAACGCGGGCTACTTCACCGCCGCGAGTGCCTACCACGCGCTCCCCCTCGGGCGTCCCATCTTTTTCTTCGACGCGTTCGCCAGGACCGACAACGTGGTGACGACGACGACGGGTCTCCATCGCCCCCTCGCCGCCCGCGAAATGGCCAAACTTGACAAAAGCGTCAAGGCAGCCGCCTCTCCGTCCGGCGGTTCCCACTCCGGCCTCAGCGACTCGGACTCCTCCACCGTCGTGGATTTCGCTCACTCCCCCTCCAAGAAAGGACCGCTCGATCTCGACCTCAACCTCCCCCCTCCACCGGAGAAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010104 GO:0010105 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016604 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070297 GO:0070298 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

250

Amino Acids

26.38

Weight (kDa)

10.03

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 24 - 73 1.9e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
AccB1I GGYRCC 2 cut(s) 382, 388
AccBSI CCGCTC 1 cut(s) 709
AclWI GGATC 3 cut(s) 61, 119, 132
AcoI YGGCCR 3 cut(s) 249, 438, 585
AcyI GRCGYC 5 cut(s) 81, 245, 383, 389, 493
AfaI GTAC 2 cut(s) 191, 212
AfiI CCNNNNNNNGG 9 cut(s) 33, 76, 120, 247, 325, 430, 583, 629, 739
AflIII ACRYGT 1 cut(s) 513
AhdI GACNNNNNGTC 2 cut(s) 370, 552
AjnI CCWGG 4 cut(s) 127, 330, 399, 521
AleI CACNNNNGTG 1 cut(s) 671
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 2 cut(s) 221, 256
AluI AGCT 2 cut(s) 221, 256
Alw26I GTCTC 1 cut(s) 560
AlwI GGATC 3 cut(s) 61, 119, 132
Ama87I CYCGRG 2 cut(s) 62, 488
AoxI GGCC 7 cut(s) 92, 249, 327, 396, 438, 585, 643
ApeKI GCWGC 6 cut(s) 17, 110, 291, 339, 416, 611
AspLEI GCGC 8 cut(s) 184, 205, 337, 339, 385, 391, 421, 481
AspS9I GGNCC 6 cut(s) 36, 328, 397, 403, 525, 704
AsuC2I CCSGG 2 cut(s) 34, 278
AsuHPI GGTGA 3 cut(s) 400, 448, 550
AvaI CYCGRG 2 cut(s) 62, 488
AvaII GGWCC 4 cut(s) 36, 403, 525, 704
BalI TGGCCA 1 cut(s) 587
BamHI GGATCC 1 cut(s) 124
BanI GGYRCC 2 cut(s) 382, 388
BbsI GAAGAC 1 cut(s) 143
BbvCI CCTCAGC 2 cut(s) 171, 647
BbvI GCAGC 6 cut(s) 29, 97, 303, 351, 428, 623
BccI CCATC 3 cut(s) 318, 506, 567
BceAI ACGGC 2 cut(s) 30, 183
BciT130I CCWGG 4 cut(s) 129, 332, 401, 523
BcnI CCSGG 2 cut(s) 34, 278
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 1 cut(s) 345
BfoI RGCGCY 3 cut(s) 386, 392, 422
Bme1390I CCNGG 6 cut(s) 34, 129, 278, 332, 401, 523
Bme18I GGWCC 4 cut(s) 36, 403, 525, 704
BmeRI GACNNNNNGTC 2 cut(s) 370, 552
BmeT110I CYCGRG 2 cut(s) 62, 488
BmgT120I GGNCC 6 cut(s) 36, 328, 397, 403, 525, 704
BmiI GGNNCC 8 cut(s) 6, 31, 37, 38, 126, 384, 390, 634
BmrFI CCNGG 6 cut(s) 34, 129, 278, 332, 401, 523
BoxI GACNNNNGTC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 143
Bpu10I CCTNAGC 3 cut(s) 171, 222, 647
BpuMI CCSGG 2 cut(s) 34, 278
BsaHI GRCGYC 5 cut(s) 81, 245, 383, 389, 493
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 7 cut(s) 95, 214, 277, 330, 360, 399, 487
BsaWI WCCGGW 1 cut(s) 739
BsaXI ACNNNNNCTCC 4 cut(s) 644, 674, 677, 707
Bsc4I CCNNNNNNNGG 9 cut(s) 33, 76, 120, 247, 325, 430, 583, 629, 739
Bse118I RCCGGY 3 cut(s) 247, 379, 385
BseBI CCWGG 4 cut(s) 129, 332, 401, 523
BseDI CCNNGG 7 cut(s) 95, 214, 277, 330, 360, 399, 487
BseLI CCNNNNNNNGG 9 cut(s) 33, 76, 120, 247, 325, 430, 583, 629, 739
BseMII CTCAG 2 cut(s) 162, 661
BsePI GCGCGC 1 cut(s) 335
BseRI GAGGAG 3 cut(s) 188, 358, 652
BseX3I CGGCCG 1 cut(s) 249
BseXI GCAGC 6 cut(s) 29, 97, 303, 351, 428, 623
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 7 cut(s) 94, 251, 329, 398, 440, 587, 645
BshNI GGYRCC 2 cut(s) 382, 388
BsiEI CGRYCG 1 cut(s) 252
BsiHKCI CYCGRG 2 cut(s) 62, 488
BsiWI CGTACG 1 cut(s) 189
BslFI GGGAC 3 cut(s) 49, 358, 480
BslI CCNNNNNNNGG 9 cut(s) 33, 76, 120, 247, 325, 430, 583, 629, 739
BsmAI GTCTC 1 cut(s) 560
BsmFI GGGAC 3 cut(s) 49, 358, 480
BsnI GGCC 7 cut(s) 94, 251, 329, 398, 440, 587, 645
Bso31I GGTCTC 1 cut(s) 560
BsoBI CYCGRG 2 cut(s) 62, 488
Bsp143I GATC 4 cut(s) 66, 117, 124, 712
BspANI GGCC 7 cut(s) 94, 251, 329, 398, 440, 587, 645
BspCNI CTCAG 2 cut(s) 163, 660
BspLI GGNNCC 8 cut(s) 6, 31, 37, 38, 126, 384, 390, 634
BspPI GGATC 3 cut(s) 61, 119, 132
BspT107I GGYRCC 2 cut(s) 382, 388
BspTNI GGTCTC 1 cut(s) 560
BsrBI CCGCTC 1 cut(s) 709
BsrFI RCCGGY 3 cut(s) 247, 379, 385
BssAI RCCGGY 3 cut(s) 247, 379, 385
BssECI CCNNGG 7 cut(s) 95, 214, 277, 330, 360, 399, 487
BssHII GCGCGC 1 cut(s) 335
BssMI GATC 4 cut(s) 66, 117, 124, 712
BssNI GRCGYC 5 cut(s) 81, 245, 383, 389, 493
BssT1I CCWWGG 1 cut(s) 95
Bst2UI CCWGG 4 cut(s) 129, 332, 401, 523
Bst4CI ACNGT 3 cut(s) 215, 361, 670
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 5 cut(s) 81, 245, 383, 389, 493
BstC8I GCNNGC 7 cut(s) 186, 249, 324, 337, 387, 448, 577
BstDEI CTNAG 4 cut(s) 171, 222, 228, 647
BstDSI CCRYGG 2 cut(s) 214, 360
BstH2I RGCGCY 3 cut(s) 386, 392, 422
BstHHI GCGC 8 cut(s) 184, 205, 337, 339, 385, 391, 421, 481
BstKTI GATC 4 cut(s) 69, 120, 127, 715
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 4 cut(s) 66, 117, 124, 712
BstMCI CGRYCG 1 cut(s) 252
BstNI CCWGG 4 cut(s) 129, 332, 401, 523
BstPAI GACNNNNGTC 1 cut(s) 143
BstSCI CCNGG 6 cut(s) 32, 127, 276, 330, 399, 521
BstV1I GCAGC 6 cut(s) 29, 97, 303, 351, 428, 623
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 66, 124
BstXI CCANNNNNNTGG 2 cut(s) 361, 673
BstYI RGATCY 2 cut(s) 66, 124
BstZI CGGCCG 1 cut(s) 249
BsuRI GGCC 7 cut(s) 94, 251, 329, 398, 440, 587, 645
BtgI CCRYGG 2 cut(s) 214, 360
BtgZI GCGATG 1 cut(s) 545
Cac8I GCNNGC 7 cut(s) 186, 249, 324, 337, 387, 448, 577
CfoI GCGC 8 cut(s) 184, 205, 337, 339, 385, 391, 421, 481
Cfr10I RCCGGY 3 cut(s) 247, 379, 385
Cfr13I GGNCC 6 cut(s) 36, 328, 397, 403, 525, 704
CseI GACGC 5 cut(s) 70, 253, 482, 521, 592
Csp6I GTAC 2 cut(s) 190, 211
CviQI GTAC 2 cut(s) 190, 211
DdeI CTNAG 4 cut(s) 171, 222, 228, 647
DinI GGCGCC 2 cut(s) 384, 390
DpnI GATC 4 cut(s) 68, 119, 126, 714
DpnII GATC 4 cut(s) 66, 117, 124, 712
DrdI GACNNNNNNGTC 1 cut(s) 602
DriI GACNNNNNGTC 2 cut(s) 370, 552
DseDI GACNNNNNNGTC 1 cut(s) 602
EaeI YGGCCR 3 cut(s) 249, 438, 585
EagI CGGCCG 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 83
Eam1105I GACNNNNNGTC 2 cut(s) 370, 552
EarI CTCTTC 1 cut(s) 83
EclXI CGGCCG 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 4 cut(s) 36, 403, 525, 704
Eco52I CGGCCG 1 cut(s) 249
Eco88I CYCGRG 2 cut(s) 62, 488
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 4 cut(s) 127, 330, 399, 521
EcoT14I CCWWGG 1 cut(s) 95
EgeI GGCGCC 2 cut(s) 384, 390
EheI GGCGCC 2 cut(s) 384, 390
ErhI CCWWGG 1 cut(s) 95
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 3 cut(s) 49, 358, 480
FauI CCCGC 4 cut(s) 198, 327, 439, 584
FspBI CTAG 1 cut(s) 345
GlaI GCGC 8 cut(s) 183, 204, 336, 338, 384, 390, 420, 480
HaeII RGCGCY 3 cut(s) 386, 392, 422
HaeIII GGCC 7 cut(s) 94, 251, 329, 398, 440, 587, 645
HgaI GACGC 5 cut(s) 70, 253, 482, 521, 592
HhaI GCGC 8 cut(s) 184, 205, 337, 339, 385, 391, 421, 481
Hin1I GRCGYC 5 cut(s) 81, 245, 383, 389, 493
Hin6I GCGC 8 cut(s) 182, 203, 335, 337, 383, 389, 419, 479
HinP1I GCGC 8 cut(s) 182, 203, 335, 337, 383, 389, 419, 479
HinfI GANTC 3 cut(s) 365, 653, 659
HphI GGTGA 3 cut(s) 400, 448, 550
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 2 cut(s) 9, 658
Hpy188III TCNNGA 4 cut(s) 64, 85, 241, 716
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 6 cut(s) 247, 515, 547, 550, 553, 674
HpyCH4III ACNGT 3 cut(s) 215, 361, 670
HpyCH4IV ACGT 2 cut(s) 158, 534
HpyF3I CTNAG 4 cut(s) 171, 222, 228, 647
HpySE526I ACGT 2 cut(s) 158, 534
Hsp92I GRCGYC 5 cut(s) 81, 245, 383, 389, 493
HspAI GCGC 8 cut(s) 182, 203, 335, 337, 383, 389, 419, 479
KasI GGCGCC 2 cut(s) 382, 388
KflI GGGWCCC 1 cut(s) 36
KroI GCCGGC 2 cut(s) 247, 385
KroNI GCCGGC 2 cut(s) 249, 387
Kzo9I GATC 4 cut(s) 66, 117, 124, 712
LmnI GCTCC 4 cut(s) 10, 35, 218, 486
Lsp1109I GCAGC 6 cut(s) 29, 97, 303, 351, 428, 623
MaeI CTAG 1 cut(s) 345
MaeII ACGT 2 cut(s) 158, 534
MaeIII GTNAC 1 cut(s) 538
MalI GATC 4 cut(s) 68, 119, 126, 714
MbiI CCGCTC 1 cut(s) 709
MboI GATC 4 cut(s) 66, 117, 124, 712
MboII GAAGA 3 cut(s) 100, 148, 499
MflI RGATCY 2 cut(s) 66, 124
MlsI TGGCCA 1 cut(s) 587
MluI ACGCGT 1 cut(s) 513
MluNI TGGCCA 1 cut(s) 587
Mly113I GGCGCC 2 cut(s) 383, 389
MlyI GAGTC 3 cut(s) 359, 647, 653
Mox20I TGGCCA 1 cut(s) 587
MreI CGCCGGCG 1 cut(s) 385
MroNI GCCGGC 2 cut(s) 247, 385
MscI TGGCCA 1 cut(s) 587
MslI CAYNNNNRTG 1 cut(s) 671
Msp20I TGGCCA 1 cut(s) 587
MspA1I CMGCKG 1 cut(s) 294
MspR9I CCNGG 6 cut(s) 34, 129, 278, 332, 401, 523
MvaI CCWGG 4 cut(s) 129, 332, 401, 523
NaeI GCCGGC 2 cut(s) 249, 387
NarI GGCGCC 2 cut(s) 383, 389
NciI CCSGG 2 cut(s) 34, 278
NdeII GATC 4 cut(s) 66, 117, 124, 712
NgoMIV GCCGGC 2 cut(s) 247, 385
NlaIV GGNNCC 8 cut(s) 6, 31, 37, 38, 126, 384, 390, 634
NmeAIII GCCGAG 3 cut(s) 132, 139, 277
NmuCI GTSAC 1 cut(s) 538
OliI CACNNNNGTG 1 cut(s) 671
PaeR7I CTCGAG 1 cut(s) 62
PauI GCGCGC 1 cut(s) 335
PceI AGGCCT 1 cut(s) 94
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 525, 576
PdiI GCCGGC 2 cut(s) 249, 387
Pfl23II CGTACG 1 cut(s) 189
PfoI TCCNGGA 1 cut(s) 32
PleI GAGTC 3 cut(s) 359, 647, 653
PluTI GGCGCC 2 cut(s) 386, 392
PpsI GAGTC 3 cut(s) 359, 647, 653
PpuMI RGGWCCY 1 cut(s) 36
PshAI GACNNNNGTC 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 4 cut(s) 127, 330, 399, 521
PspGI CCWGG 4 cut(s) 127, 330, 399, 521
PspLI CGTACG 1 cut(s) 189
PspN4I GGNNCC 8 cut(s) 6, 31, 37, 38, 126, 384, 390, 634
PspPI GGNCC 6 cut(s) 36, 328, 397, 403, 525, 704
PspPPI RGGWCCY 1 cut(s) 36
PsuI RGATCY 2 cut(s) 66, 124
PteI GCGCGC 1 cut(s) 335
RsaI GTAC 2 cut(s) 191, 212
RsaNI GTAC 2 cut(s) 190, 211
RseI CAYNNNNRTG 1 cut(s) 671
Sau3AI GATC 4 cut(s) 66, 117, 124, 712
Sau96I GGNCC 6 cut(s) 36, 328, 397, 403, 525, 704
SchI GAGTC 3 cut(s) 359, 647, 653
ScrFI CCNGG 6 cut(s) 34, 129, 278, 332, 401, 523
SetI ASST 7 cut(s) 161, 223, 258, 408, 537, 723, 729
SfoI GGCGCC 2 cut(s) 384, 390
Sfr274I CTCGAG 1 cut(s) 62
SgrAI CRCCGGYG 2 cut(s) 379, 385
SinI GGWCC 4 cut(s) 36, 403, 525, 704
SlaI CTCGAG 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 671
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SseBI AGGCCT 1 cut(s) 94
SspDI GGCGCC 2 cut(s) 382, 388
SspMI CTAG 1 cut(s) 345
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 6 cut(s) 32, 127, 276, 330, 399, 521
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 3 cut(s) 215, 361, 670
TaiI ACGT 2 cut(s) 161, 537
TaqI TCGA 5 cut(s) 63, 162, 510, 711, 717
TaqII GACCGA 1 cut(s) 542
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 6 cut(s) 17, 110, 291, 339, 416, 611
Tsp45I GTSAC 1 cut(s) 538
TspGWI ACGGA 2 cut(s) 59, 612
VpaK11BI GGWCC 4 cut(s) 36, 403, 525, 704
XhoI CTCGAG 1 cut(s) 62
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.