AT3G15210

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003786
Physical Location & Seq
Forward (+)
5121303 .. 5122562
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15210.1

Sequence Viewer

Length: 669 bp
ATGGCCAAGATGGGCTTGAAACCCGACCCGGCTACTACTAACCAGACCCACAATAATGCCAAGGAGATTCGTTACAGAGGCGTTAGGAAGCGTCCTTGGGGCCGTTATGCCGCCGAGATCCGAGATCCGGGCAAGAAAACCCGCGTCTGGCTTGGCACTTTCGATACGGCTGAAGAGGCGGCGCGTGCTTACGATACGGCGGCGCGTGATTTTCGTGGTGCTAAGGCTAAGACCAATTTCCCAACTTTTCTCGAGCTGAGTGACCAGAAGGTCCCTACCGGTTTCGCGCGTAGCCCTAGCCAGAGCAGCACGCTCGACTGTGCTTCTCCTCCGACGTTAGTTGTGCCTTCAGCGACGGCTGGGAATGTTCCCCCGCAGCTCGAGCTTAGTCTCGGCGGAGGAGGCGGCGGCTCGTGTTATCAGATCCCGATGTCGCGTCCTGTCTACTTTTTGGACCTGATGGGGATCGGTAACGTAGGTCGTGGTCAGCCTCCTCCTGTGACATCGGCGTTTAGATCGCCGGTGGTGCATGTTGCGACGAAGATGGCTTGTGGTGCCCAAAGCGACTCTGATTCGTCATCGGTCGTTGATTTCGAAGGTGGGATGGAGAAGAGATCTCAGCTGTTAGATCTAGATCTTAATTTGCCTCCTCCATCGGAACAGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010104 GO:0010105 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016604 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070297 GO:0070298 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

222

Amino Acids

23.74

Weight (kDa)

9.01

Isoelectric Point (pI)

63.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 24 - 73 2e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 554
AccI GTMKAC 1 cut(s) 444
AccII CGCG 6 cut(s) 144, 184, 205, 287, 289, 436
AciI CCGC 8 cut(s) 111, 142, 179, 200, 374, 396, 405, 408
AclWI GGATC 4 cut(s) 112, 119, 418, 473
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 192, 333
AfiI CCNNNNNNNGG 2 cut(s) 127, 147
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 1 cut(s) 19
AluBI AGCT 4 cut(s) 256, 379, 385, 622
AluI AGCT 4 cut(s) 256, 379, 385, 622
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 4 cut(s) 112, 119, 418, 473
Ama87I CYCGRG 2 cut(s) 251, 380
AoxI GGCC 3 cut(s) 3, 100, 663
ApeKI GCWGC 2 cut(s) 306, 376
AsiGI ACCGGT 1 cut(s) 278
AspLEI GCGC 3 cut(s) 184, 205, 289
AspS9I GGNCC 3 cut(s) 100, 271, 454
AsuC2I CCSGG 2 cut(s) 29, 129
AsuII TTCGAA 1 cut(s) 594
AvaI CYCGRG 2 cut(s) 251, 380
AvaII GGWCC 2 cut(s) 271, 454
BaeGI GKGCMC 1 cut(s) 559
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 554
BauI CACGAG 1 cut(s) 412
BbvI GCAGC 2 cut(s) 318, 388
BccI CCATC 5 cut(s) 4, 454, 538, 598, 661
BceAI ACGGC 4 cut(s) 87, 183, 213, 372
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BcnI CCSGG 2 cut(s) 29, 129
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 2 cut(s) 297, 632
BglII AGATCT 3 cut(s) 614, 628, 634
BisI GCNGC 7 cut(s) 111, 180, 201, 307, 377, 406, 409
BlsI GCNGC 7 cut(s) 112, 181, 202, 308, 378, 407, 410
Bme1390I CCNGG 2 cut(s) 29, 129
Bme18I GGWCC 2 cut(s) 271, 454
BmeT110I CYCGRG 2 cut(s) 251, 380
BmgT120I GGNCC 3 cut(s) 100, 271, 454
BmiI GGNNCC 3 cut(s) 101, 273, 556
BmrFI CCNGG 2 cut(s) 29, 129
Bpu10I CCTNAGC 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 594
BpuMI CCSGG 2 cut(s) 29, 129
BsaBI GATNNNNATC 2 cut(s) 464, 633
BsaJI CCNNGG 2 cut(s) 60, 95
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 147
Bse118I RCCGGY 2 cut(s) 278, 520
Bse8I GATNNNNATC 2 cut(s) 464, 633
BseDI CCNNGG 2 cut(s) 60, 95
BseGI GGATG 1 cut(s) 609
BseJI GATNNNNATC 2 cut(s) 464, 633
BseLI CCNNNNNNNGG 2 cut(s) 127, 147
BseMII CTCAG 2 cut(s) 248, 632
BseRI GAGGAG 4 cut(s) 318, 414, 483, 639
BseSI GKGCMC 1 cut(s) 559
BseXI GCAGC 2 cut(s) 318, 388
BseYI CCCAGC 1 cut(s) 359
Bsh1236I CGCG 6 cut(s) 144, 184, 205, 287, 289, 436
Bsh1285I CGRYCG 1 cut(s) 585
BshFI GGCC 3 cut(s) 5, 102, 665
BshNI GGYRCC 1 cut(s) 554
BshTI ACCGGT 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 585
BsiHKCI CYCGRG 2 cut(s) 251, 380
BsiSI CCGG 4 cut(s) 29, 128, 279, 521
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 127, 147
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 3 cut(s) 5, 102, 665
BsoBI CYCGRG 2 cut(s) 251, 380
Bsp119I TTCGAA 1 cut(s) 594
Bsp1286I GDGCHC 1 cut(s) 559
Bsp143I GATC 8 cut(s) 117, 124, 423, 465, 515, 614, 628, 634
BspACI CCGC 8 cut(s) 111, 142, 179, 200, 374, 396, 405, 408
BspANI GGCC 3 cut(s) 5, 102, 665
BspCNI CTCAG 2 cut(s) 249, 631
BspFNI CGCG 6 cut(s) 144, 184, 205, 287, 289, 436
BspLI GGNNCC 3 cut(s) 101, 273, 556
BspPI GGATC 4 cut(s) 112, 119, 418, 473
BspT104I TTCGAA 1 cut(s) 594
BspT107I GGYRCC 1 cut(s) 554
BsrFI RCCGGY 2 cut(s) 278, 520
BssAI RCCGGY 2 cut(s) 278, 520
BssECI CCNNGG 2 cut(s) 60, 95
BssMI GATC 8 cut(s) 117, 124, 423, 465, 515, 614, 628, 634
BssSI CACGAG 1 cut(s) 412
BssT1I CCWWGG 2 cut(s) 60, 95
Bst2BI CACGAG 1 cut(s) 412
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 2 cut(s) 168, 605
BstBI TTCGAA 1 cut(s) 594
BstC8I GCNNGC 2 cut(s) 186, 311
BstDEI CTNAG 5 cut(s) 222, 228, 257, 386, 618
BstF5I GGATG 1 cut(s) 609
BstFNI CGCG 6 cut(s) 144, 184, 205, 287, 289, 436
BstHHI GCGC 3 cut(s) 184, 205, 289
BstKTI GATC 8 cut(s) 120, 127, 426, 468, 518, 617, 631, 637
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 8 cut(s) 117, 124, 423, 465, 515, 614, 628, 634
BstMCI CGRYCG 1 cut(s) 585
BstMWI GCNNNNNNNGC 7 cut(s) 176, 185, 306, 382, 402, 526, 554
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 2 cut(s) 27, 127
BstSLI GKGCMC 1 cut(s) 559
BstUI CGCG 6 cut(s) 144, 184, 205, 287, 289, 436
BstV1I GCAGC 2 cut(s) 318, 388
BstX2I RGATCY 6 cut(s) 117, 124, 423, 614, 628, 634
BstYI RGATCY 6 cut(s) 117, 124, 423, 614, 628, 634
BsuRI GGCC 3 cut(s) 5, 102, 665
BtsCI GGATG 1 cut(s) 609
Cac8I GCNNGC 2 cut(s) 186, 311
CfoI GCGC 3 cut(s) 184, 205, 289
Cfr10I RCCGGY 2 cut(s) 278, 520
Cfr13I GGNCC 3 cut(s) 100, 271, 454
CseI GACGC 3 cut(s) 80, 133, 425
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 1 cut(s) 530
DdeI CTNAG 5 cut(s) 222, 228, 257, 386, 618
DpnI GATC 8 cut(s) 119, 126, 425, 467, 517, 616, 630, 636
DpnII GATC 8 cut(s) 117, 124, 423, 465, 515, 614, 628, 634
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 168, 605
EarI CTCTTC 2 cut(s) 168, 605
EciI GGCGGA 1 cut(s) 411
Eco130I CCWWGG 2 cut(s) 60, 95
Eco147I AGGCCT 1 cut(s) 665
Eco47I GGWCC 2 cut(s) 271, 454
Eco57I CTGAAG 2 cut(s) 192, 333
Eco88I CYCGRG 2 cut(s) 251, 380
EcoO109I RGGNCCY 1 cut(s) 271
EcoT14I CCWWGG 2 cut(s) 60, 95
ErhI CCWWGG 2 cut(s) 60, 95
FaeI CATG 1 cut(s) 533
FaiI YATR 2 cut(s) 108, 531
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 1 cut(s) 257
FatI CATG 1 cut(s) 529
FauI CCCGC 2 cut(s) 149, 381
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 7 cut(s) 111, 180, 201, 307, 377, 406, 409
FokI GGATG 1 cut(s) 616
Fsp4HI GCNGC 7 cut(s) 111, 180, 201, 307, 377, 406, 409
FspBI CTAG 2 cut(s) 297, 632
GlaI GCGC 3 cut(s) 183, 204, 288
GluI GCNGC 7 cut(s) 111, 180, 201, 307, 377, 406, 409
GsaI CCCAGC 1 cut(s) 363
HaeIII GGCC 3 cut(s) 5, 102, 665
HapII CCGG 4 cut(s) 29, 128, 279, 521
HgaI GACGC 3 cut(s) 80, 133, 425
HhaI GCGC 3 cut(s) 184, 205, 289
Hin1II CATG 1 cut(s) 533
Hin6I GCGC 3 cut(s) 182, 203, 287
HinP1I GCGC 3 cut(s) 182, 203, 287
HinfI GANTC 3 cut(s) 67, 566, 572
HpaII CCGG 4 cut(s) 29, 128, 279, 521
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 5 cut(s) 122, 333, 423, 571, 658
Hpy188III TCNNGA 3 cut(s) 251, 427, 632
Hpy8I GTNNAC 1 cut(s) 445
Hpy99I CGWCG 3 cut(s) 337, 358, 541
HpyAV CCTTC 3 cut(s) 262, 357, 590
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 2 cut(s) 335, 474
HpyCH4V TGCA 1 cut(s) 529
HpyF10VI GCNNNNNNNGC 7 cut(s) 176, 185, 306, 382, 402, 526, 554
HpyF3I CTNAG 5 cut(s) 222, 228, 257, 386, 618
HpySE526I ACGT 2 cut(s) 335, 474
Hsp92II CATG 1 cut(s) 533
HspAI GCGC 3 cut(s) 182, 203, 287
Kzo9I GATC 8 cut(s) 117, 124, 423, 465, 515, 614, 628, 634
Lsp1109I GCAGC 2 cut(s) 318, 388
MaeI CTAG 2 cut(s) 297, 632
MaeII ACGT 2 cut(s) 335, 474
MaeIII GTNAC 4 cut(s) 71, 260, 470, 499
MalI GATC 8 cut(s) 119, 126, 425, 467, 517, 616, 630, 636
MboI GATC 8 cut(s) 117, 124, 423, 465, 515, 614, 628, 634
MboII GAAGA 3 cut(s) 185, 553, 622
MflI RGATCY 6 cut(s) 117, 124, 423, 614, 628, 634
MhlI GDGCHC 1 cut(s) 559
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 235, 640
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 9 cut(s) 71, 169, 339, 392, 395, 501, 504, 657, 660
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 639
MslI CAYNNNNRTG 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 622
MspI CCGG 4 cut(s) 29, 128, 279, 521
MspR9I CCNGG 2 cut(s) 29, 129
MvnI CGCG 6 cut(s) 144, 184, 205, 287, 289, 436
MwoI GCNNNNNNNGC 7 cut(s) 176, 185, 306, 382, 402, 526, 554
NciI CCSGG 2 cut(s) 29, 129
NdeII GATC 8 cut(s) 117, 124, 423, 465, 515, 614, 628, 634
NlaIII CATG 1 cut(s) 533
NlaIV GGNNCC 3 cut(s) 101, 273, 556
NmeAIII GCCGAG 2 cut(s) 139, 372
NmuCI GTSAC 2 cut(s) 260, 499
NspI RCATGY 1 cut(s) 533
NspV TTCGAA 1 cut(s) 594
PaeR7I CTCGAG 2 cut(s) 251, 380
PceI AGGCCT 1 cut(s) 665
PcsI WCGNNNNNNNCGW 1 cut(s) 591
PfeI GAWTC 2 cut(s) 67, 572
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 7 cut(s) 112, 181, 202, 308, 378, 407, 410
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 359
PspN4I GGNNCC 3 cut(s) 101, 273, 556
PspPI GGNCC 3 cut(s) 100, 271, 454
PspPPI RGGWCCY 1 cut(s) 271
PspXI VCTCGAGB 1 cut(s) 380
PsuI RGATCY 6 cut(s) 117, 124, 423, 614, 628, 634
PvuII CAGCTG 1 cut(s) 622
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 1 cut(s) 639
SatI GCNGC 7 cut(s) 111, 180, 201, 307, 377, 406, 409
Sau3AI GATC 8 cut(s) 117, 124, 423, 465, 515, 614, 628, 634
Sau96I GGNCC 3 cut(s) 100, 271, 454
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 2 cut(s) 29, 129
SduI GDGCHC 1 cut(s) 559
Sfr274I CTCGAG 2 cut(s) 251, 380
SfuI TTCGAA 1 cut(s) 594
SgrAI CRCCGGYG 1 cut(s) 520
SinI GGWCC 2 cut(s) 271, 454
SlaI CTCGAG 2 cut(s) 251, 380
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 2 cut(s) 251, 380
SmoI CTYRAG 2 cut(s) 251, 380
Sse9I AATT 2 cut(s) 235, 640
SseBI AGGCCT 1 cut(s) 665
SsiI CCGC 8 cut(s) 111, 142, 179, 200, 374, 396, 405, 408
SspMI CTAG 2 cut(s) 297, 632
StuI AGGCCT 1 cut(s) 665
StyD4I CCNGG 2 cut(s) 27, 127
StyI CCWWGG 2 cut(s) 60, 95
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 2 cut(s) 338, 477
TaqI TCGA 5 cut(s) 162, 252, 315, 381, 594
TaqII GACCGA 1 cut(s) 571
TasI AATT 2 cut(s) 235, 640
TauI GCSGC 5 cut(s) 113, 182, 203, 408, 411
TfiI GAWTC 2 cut(s) 67, 572
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TseFI GTSAC 2 cut(s) 260, 499
TseI GCWGC 2 cut(s) 306, 376
Tsp45I GTSAC 2 cut(s) 260, 499
VpaK11BI GGWCC 2 cut(s) 271, 454
XbaI TCTAGA 1 cut(s) 631
XceI RCATGY 1 cut(s) 533
XhoI CTCGAG 2 cut(s) 251, 380
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 2 cut(s) 297, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.